Wall clock time and date at job start Sat Apr 11 2020 06:11:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50701 * 109.47341 * 2 1 4 4 N 1.30285 * 126.34483 * 277.46937 * 3 2 1 5 5 N 1.28531 * 110.05017 * 180.02562 * 4 3 2 6 6 C 1.31211 * 109.86105 * 359.74711 * 5 4 3 7 7 N 1.38586 * 126.47681 * 180.25656 * 6 5 4 8 8 C 1.46900 * 110.99959 * 248.63813 * 7 6 5 9 9 C 1.46904 * 110.99715 * 12.58654 * 7 6 5 10 10 H 1.09003 * 109.46759 * 55.00381 * 9 7 6 11 11 C 1.52993 * 109.47093 * 295.00249 * 9 7 6 12 12 C 1.50700 * 109.46997 * 175.00248 * 9 7 6 13 13 H 1.08001 * 120.00350 * 93.11646 * 12 9 7 14 14 C 1.37883 * 119.99820 * 273.11860 * 12 9 7 15 15 N 1.31514 * 119.99976 * 185.09230 * 14 12 9 16 16 Si 1.86803 * 119.99968 * 5.08677 * 14 12 9 17 17 H 1.48500 * 109.46856 * 95.68488 * 16 14 12 18 18 H 1.48502 * 109.46849 * 215.68104 * 16 14 12 19 19 H 1.48494 * 109.47006 * 335.68384 * 16 14 12 20 20 N 1.36458 * 107.05431 * 0.40084 * 6 5 4 21 21 C 1.46503 * 127.13451 * 179.87813 * 20 6 5 22 22 C 1.52995 * 109.47103 * 83.92520 * 21 20 6 23 23 C 1.53005 * 109.47098 * 304.60359 * 22 21 20 24 24 O 1.42898 * 109.47730 * 64.60379 * 22 21 20 25 25 C 1.52999 * 109.47012 * 184.60737 * 22 21 20 26 26 C 1.53000 * 109.47476 * 179.97438 * 25 22 21 27 27 O 1.42894 * 109.47334 * 179.97438 * 26 25 22 28 28 C 1.42900 * 114.00055 * 179.97438 * 27 26 25 29 29 H 1.09006 * 109.46827 * 306.32588 * 1 2 3 30 30 H 1.08996 * 109.47002 * 66.32428 * 1 2 3 31 31 H 1.08998 * 109.47486 * 186.32798 * 1 2 3 32 32 H 1.09001 * 109.46852 * 239.99846 * 2 1 3 33 33 H 1.09001 * 109.46885 * 120.00114 * 2 1 3 34 34 H 1.09002 * 109.47314 * 63.55530 * 8 7 6 35 35 H 1.09005 * 109.47157 * 183.55633 * 8 7 6 36 36 H 1.09003 * 109.46995 * 303.55256 * 8 7 6 37 37 H 1.09001 * 109.47263 * 304.69039 * 11 9 7 38 38 H 1.09003 * 109.47637 * 64.69521 * 11 9 7 39 39 H 1.09006 * 109.47095 * 184.69427 * 11 9 7 40 40 H 0.97000 * 120.00363 * 180.02562 * 15 14 12 41 41 H 1.08998 * 109.47194 * 323.92053 * 21 20 6 42 42 H 1.09000 * 109.46265 * 203.91737 * 21 20 6 43 43 H 1.08997 * 109.47010 * 300.00146 * 23 22 21 44 44 H 1.09001 * 109.47009 * 60.00567 * 23 22 21 45 45 H 1.09000 * 109.47025 * 180.02562 * 23 22 21 46 46 H 0.96703 * 113.99427 * 65.71103 * 24 22 21 47 47 H 1.09006 * 109.47241 * 59.99744 * 25 22 21 48 48 H 1.09001 * 109.47344 * 299.99531 * 25 22 21 49 49 H 1.09000 * 109.47539 * 300.00444 * 26 25 22 50 50 H 1.09006 * 109.46735 * 59.99874 * 26 25 22 51 51 H 1.09004 * 109.47079 * 60.00681 * 28 27 26 52 52 H 1.09001 * 109.47160 * 180.02562 * 28 27 26 53 53 H 1.08994 * 109.47590 * 300.00598 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.1612 2.1942 -1.0405 5 7 2.6172 3.3415 -0.6830 6 6 2.8002 3.3634 0.6161 7 7 3.2746 4.4297 1.3635 8 6 4.6107 4.1420 1.9019 9 6 3.2816 5.6664 0.5706 10 1 2.2845 5.8459 0.1686 11 6 4.2788 5.5279 -0.5814 12 6 3.6852 6.8233 1.4480 13 1 4.7212 7.1235 1.5032 14 6 2.7318 7.4984 2.1804 15 7 3.0664 8.5689 2.8672 16 14 0.9648 6.8927 2.1970 17 1 0.7457 6.0382 3.3915 18 1 0.0432 8.0561 2.2449 19 1 0.7009 6.1024 0.9678 20 7 2.4381 2.1368 1.0920 21 6 2.4712 1.6834 2.4847 22 6 1.1929 2.1299 3.1969 23 6 1.0359 3.6457 3.0604 24 8 0.0662 1.4793 2.6059 25 6 1.2778 1.7573 4.6784 26 6 -0.0003 2.2043 5.3908 27 8 0.0788 1.8558 6.7743 28 6 -1.0710 2.2317 7.5351 29 1 -0.3633 0.6088 0.8280 30 1 -0.3633 0.4127 -0.9411 31 1 -0.3634 -1.0214 0.1133 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 5.3152 4.0190 1.0793 35 1 4.9327 4.9684 2.5357 36 1 4.5756 3.2252 2.4904 37 1 5.2593 5.2661 -0.1838 38 1 3.9419 4.7457 -1.2617 39 1 4.3457 6.4735 -1.1197 40 1 2.3959 9.0437 3.3828 41 1 3.3368 2.1154 2.9869 42 1 2.5410 0.5960 2.5111 43 1 1.8952 4.1420 3.5112 44 1 0.9753 3.9112 2.0049 45 1 0.1254 3.9639 3.5682 46 1 0.0548 0.5206 2.7321 47 1 2.1372 2.2537 5.1292 48 1 1.3896 0.6774 4.7757 49 1 -0.1119 3.2842 5.2935 50 1 -0.8599 1.7083 4.9401 51 1 -1.9532 1.7368 7.1287 52 1 -0.9328 1.9330 8.5742 53 1 -1.2041 3.3122 7.4826 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001401445793.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:55 Heat of formation + Delta-G solvation = 5.112200 kcal Electronic energy + Delta-G solvation = -33449.135588 eV Core-core repulsion = 29358.687762 eV Total energy + Delta-G solvation = -4090.447826 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.226 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.57780 -39.16691 -37.63632 -37.45130 -34.50368 -33.89447 -32.71367 -32.34876 -29.78042 -29.23930 -28.61786 -27.40017 -26.47786 -25.54087 -25.23099 -23.76614 -23.43016 -21.41370 -20.67006 -20.03383 -19.24519 -17.35806 -16.92367 -16.87200 -16.33622 -16.32325 -15.61448 -15.47364 -15.19350 -15.00890 -14.75171 -14.32475 -14.12505 -13.95580 -13.72957 -13.44721 -13.27337 -12.74439 -12.58475 -12.40976 -12.26227 -12.14480 -11.97072 -11.88527 -11.67445 -11.64247 -11.50604 -11.38706 -11.18339 -11.10155 -11.03615 -10.78101 -10.71029 -10.54835 -10.33858 -10.20799 -9.80934 -9.67400 -9.46810 -9.45587 -9.11774 -8.85396 -8.64425 -7.42254 -6.19518 -4.25024 2.24701 2.64238 3.29059 3.38059 3.40185 3.47022 3.49665 3.99983 4.35856 4.43970 4.44385 4.52993 4.55387 4.77975 4.78489 4.88598 5.01857 5.10098 5.12949 5.21988 5.28061 5.29903 5.34372 5.36716 5.44662 5.49479 5.68013 5.68962 5.73067 5.77216 5.82945 5.99300 6.04520 6.04873 6.15281 6.20686 6.32131 6.34971 6.45166 6.59982 6.65083 6.68348 6.81308 6.94042 6.97321 7.20262 7.28610 7.42971 7.54752 7.76504 8.10020 8.46188 8.84967 9.37002 9.44365 10.90252 Molecular weight = 340.23amu Principal moments of inertia in cm(-1) A = 0.008312 B = 0.006113 C = 0.004033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3367.934120 B = 4579.631531 C = 6941.549143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.023 4.023 3 C 0.162 3.838 4 N -0.293 5.293 5 N -0.327 5.327 6 C 0.378 3.622 7 N -0.455 5.455 8 C 0.035 3.965 9 C 0.179 3.821 10 H 0.062 0.938 11 C -0.173 4.173 12 C -0.502 4.502 13 H 0.076 0.924 14 C 0.086 3.914 15 N -0.888 5.888 16 Si 0.882 3.118 17 H -0.265 1.265 18 H -0.299 1.299 19 H -0.262 1.262 20 N -0.476 5.476 21 C 0.089 3.911 22 C 0.121 3.879 23 C -0.140 4.140 24 O -0.544 6.544 25 C -0.139 4.139 26 C 0.064 3.936 27 O -0.395 6.395 28 C 0.033 3.967 29 H 0.079 0.921 30 H 0.060 0.940 31 H 0.057 0.943 32 H 0.088 0.912 33 H 0.069 0.931 34 H 0.033 0.967 35 H 0.098 0.902 36 H 0.043 0.957 37 H 0.037 0.963 38 H 0.068 0.932 39 H 0.052 0.948 40 H 0.265 0.735 41 H 0.105 0.895 42 H 0.091 0.909 43 H 0.090 0.910 44 H 0.074 0.926 45 H 0.057 0.943 46 H 0.368 0.632 47 H 0.087 0.913 48 H 0.074 0.926 49 H 0.057 0.943 50 H 0.055 0.945 51 H 0.040 0.960 52 H 0.085 0.915 53 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.211 -19.111 6.001 20.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.063 4.063 3 C -0.106 4.106 4 N -0.132 5.132 5 N -0.171 5.171 6 C 0.024 3.976 7 N -0.181 5.181 8 C -0.112 4.112 9 C 0.077 3.923 10 H 0.080 0.920 11 C -0.232 4.232 12 C -0.541 4.541 13 H 0.094 0.906 14 C -0.119 4.119 15 N -0.524 5.524 16 Si 0.710 3.290 17 H -0.190 1.190 18 H -0.227 1.227 19 H -0.187 1.187 20 N -0.171 5.171 21 C -0.035 4.035 22 C 0.080 3.920 23 C -0.197 4.197 24 O -0.350 6.350 25 C -0.178 4.178 26 C -0.013 4.013 27 O -0.315 6.315 28 C -0.064 4.064 29 H 0.097 0.903 30 H 0.079 0.921 31 H 0.076 0.924 32 H 0.106 0.894 33 H 0.088 0.912 34 H 0.051 0.949 35 H 0.117 0.883 36 H 0.061 0.939 37 H 0.056 0.944 38 H 0.087 0.913 39 H 0.071 0.929 40 H 0.075 0.925 41 H 0.123 0.877 42 H 0.109 0.891 43 H 0.109 0.891 44 H 0.093 0.907 45 H 0.075 0.925 46 H 0.216 0.784 47 H 0.105 0.895 48 H 0.092 0.908 49 H 0.075 0.925 50 H 0.073 0.927 51 H 0.058 0.942 52 H 0.103 0.897 53 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -5.572 -17.860 4.976 19.360 hybrid contribution -0.536 -1.064 1.146 1.653 sum -6.108 -18.924 6.122 20.806 Atomic orbital electron populations 1.21959 0.93711 1.01817 1.04146 1.19789 0.96709 0.86827 1.02982 1.24431 1.05262 0.97659 0.83223 1.73890 1.16414 0.98551 1.24356 1.74696 1.21528 1.13572 1.07328 1.23508 0.99829 0.84993 0.89313 1.60449 1.23801 0.99637 1.34219 1.22297 0.88162 1.01316 0.99389 1.20024 0.97570 0.84159 0.90538 0.91964 1.22474 0.99078 1.01790 0.99857 1.20899 0.96470 1.10379 1.26314 0.90578 1.25076 0.99174 0.93788 0.93904 1.69927 1.34882 1.17475 1.30143 0.86906 0.84327 0.77862 0.79863 1.19024 1.22665 1.18682 1.46061 1.50928 1.12256 1.07904 1.22509 1.00532 1.00520 0.79961 1.21639 0.84931 0.95741 0.89717 1.22158 1.03063 0.89956 1.04479 1.86728 1.45694 1.23876 1.78739 1.22095 0.99124 1.02248 0.94307 1.22491 0.97791 0.99888 0.81091 1.87820 1.40945 1.82137 1.20561 1.22722 0.88127 0.99385 0.96167 0.90256 0.92122 0.92360 0.89366 0.91199 0.94878 0.88303 0.93880 0.94382 0.91321 0.92882 0.92483 0.87660 0.89094 0.89146 0.90747 0.92456 0.78444 0.89452 0.90755 0.92495 0.92684 0.94175 0.89688 0.93929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.58 9.88 37.16 0.37 -1.22 16 2 C -0.02 -0.25 6.37 -27.88 -0.18 -0.43 16 3 C 0.16 2.58 7.32 -154.03 -1.13 1.45 16 4 N -0.29 -5.87 12.18 32.99 0.40 -5.47 16 5 N -0.33 -7.17 9.02 30.32 0.27 -6.90 16 6 C 0.38 7.48 4.86 -318.87 -1.55 5.93 16 7 N -0.46 -9.27 2.71 -176.08 -0.48 -9.75 16 8 C 0.04 0.63 8.76 60.06 0.53 1.16 16 9 C 0.18 4.22 1.45 -68.87 -0.10 4.12 16 10 H 0.06 1.62 5.46 -51.93 -0.28 1.34 16 11 C -0.17 -3.79 8.55 37.15 0.32 -3.47 16 12 C -0.50 -13.21 7.70 -34.44 -0.27 -13.47 16 13 H 0.08 2.16 8.06 -52.49 -0.42 1.74 16 14 C 0.09 2.35 5.47 -17.82 -0.10 2.25 16 15 N -0.89 -25.73 13.96 55.43 0.77 -24.96 16 16 Si 0.88 21.48 25.07 -169.99 -4.26 17.22 16 17 H -0.26 -5.97 5.34 56.52 0.30 -5.67 16 18 H -0.30 -7.47 7.11 56.52 0.40 -7.07 16 19 H -0.26 -6.60 5.85 56.52 0.33 -6.27 16 20 N -0.48 -7.54 2.50 -114.09 -0.29 -7.83 16 21 C 0.09 1.04 5.19 -4.04 -0.02 1.02 16 22 C 0.12 1.46 0.86 -90.62 -0.08 1.38 16 23 C -0.14 -2.34 4.45 37.16 0.17 -2.18 16 24 O -0.54 -6.17 9.89 -35.23 -0.35 -6.52 16 25 C -0.14 -1.42 4.78 -26.73 -0.13 -1.54 16 26 C 0.06 0.72 5.44 37.16 0.20 0.92 16 27 O -0.40 -4.68 10.70 -35.23 -0.38 -5.06 16 28 C 0.03 0.29 11.01 101.05 1.11 1.41 16 29 H 0.08 0.87 4.75 -51.93 -0.25 0.62 16 30 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 31 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 33 H 0.07 0.55 6.97 -51.93 -0.36 0.19 16 34 H 0.03 0.59 6.20 -51.93 -0.32 0.27 16 35 H 0.10 1.90 7.11 -51.93 -0.37 1.53 16 36 H 0.04 0.63 5.63 -51.93 -0.29 0.34 16 37 H 0.04 0.78 6.15 -51.93 -0.32 0.47 16 38 H 0.07 1.52 5.57 -51.93 -0.29 1.23 16 39 H 0.05 1.16 8.14 -51.93 -0.42 0.73 16 40 H 0.27 7.28 8.31 -40.82 -0.34 6.94 16 41 H 0.11 1.22 5.70 -51.93 -0.30 0.92 16 42 H 0.09 0.75 6.97 -51.93 -0.36 0.39 16 43 H 0.09 1.62 7.42 -51.93 -0.39 1.23 16 44 H 0.07 1.51 4.95 -51.93 -0.26 1.26 16 45 H 0.06 0.96 6.12 -51.93 -0.32 0.64 16 46 H 0.37 2.64 8.40 45.56 0.38 3.03 16 47 H 0.09 0.93 8.14 -51.93 -0.42 0.50 16 48 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 49 H 0.06 0.73 6.43 -51.93 -0.33 0.40 16 50 H 0.05 0.58 7.68 -51.93 -0.40 0.18 16 51 H 0.04 0.32 8.14 -51.93 -0.42 -0.11 16 52 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 53 H 0.04 0.38 8.14 -51.93 -0.42 -0.04 16 LS Contribution 387.58 15.07 5.84 5.84 Total: -1.00 -32.86 387.58 -7.30 -40.16 By element: Atomic # 1 Polarization: 13.91 SS G_CDS: -7.99 Total: 5.93 kcal Atomic # 6 Polarization: -1.81 SS G_CDS: -0.85 Total: -2.67 kcal Atomic # 7 Polarization: -55.59 SS G_CDS: 0.69 Total: -54.90 kcal Atomic # 8 Polarization: -10.86 SS G_CDS: -0.73 Total: -11.58 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -4.26 Total: 17.22 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -32.86 -7.30 -40.16 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001401445793.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.275 kcal (2) G-P(sol) polarization free energy of solvation -32.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.410 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.298 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.162 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds