Wall clock time and date at job start Sat Apr 11 2020 06:11:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50696 * 109.47250 * 2 1 4 4 N 1.30298 * 126.34366 * 276.43217 * 3 2 1 5 5 N 1.28535 * 110.05245 * 179.76593 * 4 3 2 6 6 C 1.31222 * 109.85716 * 0.44986 * 5 4 3 7 7 N 1.38574 * 126.47232 * 179.82472 * 6 5 4 8 8 C 1.46901 * 110.99687 * 254.39040 * 7 6 5 9 9 C 1.46901 * 111.00106 * 18.34299 * 7 6 5 10 10 H 1.08999 * 109.46955 * 54.99920 * 9 7 6 11 11 C 1.53006 * 109.46889 * 295.00282 * 9 7 6 12 12 C 1.50691 * 109.47249 * 175.00320 * 9 7 6 13 13 H 1.08005 * 120.00144 * 359.97438 * 12 9 7 14 14 C 1.37880 * 120.00064 * 180.02562 * 12 9 7 15 15 N 1.31513 * 119.99895 * 359.97438 * 14 12 9 16 16 Si 1.86800 * 119.99950 * 180.02562 * 14 12 9 17 17 H 1.48500 * 109.47533 * 89.99525 * 16 14 12 18 18 H 1.48507 * 109.46807 * 209.99518 * 16 14 12 19 19 H 1.48497 * 109.47016 * 329.99321 * 16 14 12 20 20 N 1.36451 * 107.05241 * 359.56420 * 6 5 4 21 21 C 1.46503 * 127.13408 * 180.24319 * 20 6 5 22 22 C 1.52999 * 109.47575 * 67.04865 * 21 20 6 23 23 C 1.53000 * 109.46801 * 52.83488 * 22 21 20 24 24 O 1.42900 * 109.46912 * 292.84026 * 22 21 20 25 25 C 1.52992 * 109.47477 * 172.83742 * 22 21 20 26 26 C 1.53000 * 109.47541 * 185.00219 * 25 22 21 27 27 O 1.42896 * 109.47436 * 180.02562 * 26 25 22 28 28 C 1.42902 * 113.99701 * 180.02562 * 27 26 25 29 29 H 1.08998 * 109.47131 * 281.99028 * 1 2 3 30 30 H 1.09004 * 109.47020 * 41.98358 * 1 2 3 31 31 H 1.09000 * 109.47431 * 161.98982 * 1 2 3 32 32 H 1.09003 * 109.47200 * 239.99633 * 2 1 3 33 33 H 1.08995 * 109.46905 * 120.00052 * 2 1 3 34 34 H 1.09000 * 109.47456 * 54.76130 * 8 7 6 35 35 H 1.09004 * 109.46614 * 174.76232 * 8 7 6 36 36 H 1.08996 * 109.47164 * 294.75815 * 8 7 6 37 37 H 1.08999 * 109.47027 * 299.99594 * 11 9 7 38 38 H 1.08997 * 109.47358 * 60.00075 * 11 9 7 39 39 H 1.09003 * 109.46838 * 179.97438 * 11 9 7 40 40 H 0.96998 * 119.99889 * 180.02562 * 15 14 12 41 41 H 1.09004 * 109.47313 * 187.05140 * 21 20 6 42 42 H 1.09004 * 109.46910 * 307.04843 * 21 20 6 43 43 H 1.09006 * 109.47118 * 54.84183 * 23 22 21 44 44 H 1.09000 * 109.47034 * 174.83756 * 23 22 21 45 45 H 1.08998 * 109.47458 * 294.83906 * 23 22 21 46 46 H 0.96693 * 114.00140 * 299.99086 * 24 22 21 47 47 H 1.09007 * 109.47060 * 305.00286 * 25 22 21 48 48 H 1.09000 * 109.47149 * 64.99836 * 25 22 21 49 49 H 1.09002 * 109.47027 * 300.00585 * 26 25 22 50 50 H 1.09000 * 109.47212 * 59.99655 * 26 25 22 51 51 H 1.08996 * 109.47107 * 60.00137 * 28 27 26 52 52 H 1.09002 * 109.46842 * 179.97438 * 28 27 26 53 53 H 1.08997 * 109.46920 * 299.99470 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.1789 2.1880 -1.0429 5 7 2.6236 3.3393 -0.6841 6 6 2.7950 3.3653 0.6167 7 7 3.2632 4.4338 1.3646 8 6 4.6467 4.2041 1.8019 9 6 3.1502 5.6915 0.6140 10 1 2.1197 5.8277 0.2863 11 6 4.0713 5.6413 -0.6067 12 6 3.5521 6.8427 1.4995 13 1 3.8602 6.6586 2.5181 14 6 3.5255 8.1313 1.0095 15 7 3.1498 8.3555 -0.2307 16 14 4.0243 9.5583 2.1069 17 1 5.4829 9.8014 1.9706 18 1 3.2793 10.7776 1.7025 19 1 3.7071 9.2303 3.5201 20 7 2.4197 2.1435 1.0942 21 6 2.4298 1.6982 2.4899 22 6 1.3864 2.4862 3.2844 23 6 0.0313 2.3919 2.5802 24 8 1.7857 3.8557 3.3676 25 6 1.2706 1.9022 4.6937 26 6 0.1412 2.6079 5.4470 27 8 0.0334 2.0628 6.7636 28 6 -0.9981 2.6555 7.5553 29 1 -0.3633 0.2135 1.0052 30 1 -0.3633 0.7639 -0.6875 31 1 -0.3634 -0.9773 -0.3177 32 1 1.8934 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8899 34 1 5.2709 3.9886 0.9348 35 1 5.0208 5.0950 2.3066 36 1 4.6749 3.3585 2.4891 37 1 5.1019 5.5052 -0.2790 38 1 3.7806 4.8086 -1.2472 39 1 3.9871 6.5744 -1.1639 40 1 3.1314 9.2620 -0.5755 41 1 2.1932 0.6350 2.5339 42 1 3.4175 1.8686 2.9184 43 1 -0.2304 1.3437 2.4347 44 1 -0.7304 2.8750 3.1921 45 1 0.0894 2.8896 1.6123 46 1 2.6380 3.9911 3.8035 47 1 1.0531 0.8360 4.6285 48 1 2.2101 2.0494 5.2264 49 1 0.3586 3.6740 5.5122 50 1 -0.7983 2.4607 4.9144 51 1 -1.9611 2.5084 7.0664 52 1 -1.0153 2.1870 8.5393 53 1 -0.8048 3.7227 7.6639 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001401445794.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:57 Heat of formation + Delta-G solvation = 7.847707 kcal Electronic energy + Delta-G solvation = -32920.327323 eV Core-core repulsion = 28829.998118 eV Total energy + Delta-G solvation = -4090.329205 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.226 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.49837 -39.01186 -37.56108 -37.21136 -34.48038 -33.57158 -32.74039 -32.39256 -29.31207 -28.86631 -28.44066 -27.35474 -26.48291 -25.31852 -25.07692 -23.79660 -23.44599 -21.59073 -20.32014 -20.05856 -19.23737 -17.15065 -16.89879 -16.35224 -16.25152 -16.02505 -15.47590 -15.24028 -15.20605 -14.95707 -14.61924 -14.32452 -14.21072 -13.99082 -13.58818 -13.44596 -13.16122 -12.61676 -12.46089 -12.35753 -12.17011 -12.14557 -11.79764 -11.74120 -11.53542 -11.43409 -11.40574 -11.28012 -11.17143 -11.06525 -10.89033 -10.81056 -10.69186 -10.37140 -10.13118 -10.08798 -9.95526 -9.79893 -9.62476 -9.38849 -8.74752 -8.61665 -8.32778 -7.28112 -5.96058 -4.02074 2.28963 2.68653 3.31821 3.38858 3.41003 3.47792 3.51336 4.23638 4.39023 4.49904 4.52017 4.57939 4.67461 4.80621 4.84883 4.89149 5.01999 5.03997 5.13559 5.20339 5.26169 5.32373 5.35442 5.38323 5.41600 5.44588 5.54663 5.70729 5.71845 5.73326 5.76938 5.84614 5.90921 6.01922 6.12301 6.15752 6.26796 6.30780 6.44423 6.55007 6.92113 6.94898 7.09759 7.26364 7.43281 7.61613 7.77907 7.83847 7.98116 8.08921 8.40274 8.59736 8.99272 9.45218 9.61542 11.10214 Molecular weight = 340.23amu Principal moments of inertia in cm(-1) A = 0.008490 B = 0.004755 C = 0.003307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3297.306917 B = 5887.643639 C = 8464.655645 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.026 4.026 3 C 0.147 3.853 4 N -0.290 5.290 5 N -0.319 5.319 6 C 0.396 3.604 7 N -0.437 5.437 8 C 0.035 3.965 9 C 0.235 3.765 10 H 0.045 0.955 11 C -0.182 4.182 12 C -0.505 4.505 13 H 0.063 0.937 14 C 0.062 3.938 15 N -0.886 5.886 16 Si 0.897 3.103 17 H -0.282 1.282 18 H -0.288 1.288 19 H -0.274 1.274 20 N -0.476 5.476 21 C 0.090 3.910 22 C 0.122 3.878 23 C -0.141 4.141 24 O -0.512 6.512 25 C -0.139 4.139 26 C 0.063 3.937 27 O -0.397 6.397 28 C 0.033 3.967 29 H 0.055 0.945 30 H 0.065 0.935 31 H 0.063 0.937 32 H 0.092 0.908 33 H 0.072 0.928 34 H 0.029 0.971 35 H 0.096 0.904 36 H 0.039 0.961 37 H 0.018 0.982 38 H 0.055 0.945 39 H 0.085 0.915 40 H 0.260 0.740 41 H 0.096 0.904 42 H 0.088 0.912 43 H 0.066 0.934 44 H 0.066 0.934 45 H 0.067 0.933 46 H 0.375 0.625 47 H 0.076 0.924 48 H 0.076 0.924 49 H 0.062 0.938 50 H 0.053 0.947 51 H 0.040 0.960 52 H 0.083 0.917 53 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.876 -17.762 11.322 21.621 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.066 4.066 3 C -0.121 4.121 4 N -0.129 5.129 5 N -0.162 5.162 6 C 0.041 3.959 7 N -0.161 5.161 8 C -0.113 4.113 9 C 0.130 3.870 10 H 0.062 0.938 11 C -0.242 4.242 12 C -0.543 4.543 13 H 0.081 0.919 14 C -0.140 4.140 15 N -0.524 5.524 16 Si 0.725 3.275 17 H -0.209 1.209 18 H -0.214 1.214 19 H -0.199 1.199 20 N -0.172 5.172 21 C -0.034 4.034 22 C 0.079 3.921 23 C -0.198 4.198 24 O -0.316 6.316 25 C -0.178 4.178 26 C -0.013 4.013 27 O -0.317 6.317 28 C -0.064 4.064 29 H 0.074 0.926 30 H 0.084 0.916 31 H 0.082 0.918 32 H 0.111 0.889 33 H 0.091 0.909 34 H 0.047 0.953 35 H 0.114 0.886 36 H 0.058 0.942 37 H 0.037 0.963 38 H 0.073 0.927 39 H 0.104 0.896 40 H 0.070 0.930 41 H 0.114 0.886 42 H 0.106 0.894 43 H 0.085 0.915 44 H 0.085 0.915 45 H 0.086 0.914 46 H 0.223 0.777 47 H 0.095 0.905 48 H 0.095 0.905 49 H 0.080 0.920 50 H 0.071 0.929 51 H 0.058 0.942 52 H 0.102 0.898 53 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -5.645 -17.115 9.930 20.577 hybrid contribution 1.074 0.558 1.597 2.004 sum -4.572 -16.557 11.528 20.686 Atomic orbital electron populations 1.21860 0.94028 1.02491 1.02429 1.19817 0.96320 0.87056 1.03434 1.24456 1.06657 0.97635 0.83338 1.73954 1.15934 0.98745 1.24315 1.74899 1.21119 1.12597 1.07612 1.23139 0.99073 0.85076 0.88634 1.59295 1.19157 0.99911 1.37721 1.22343 0.87956 1.01814 0.99147 1.19261 0.97015 0.81074 0.89623 0.93751 1.22622 0.97404 1.03515 1.00648 1.20999 1.45118 0.90250 0.97969 0.91920 1.24881 0.95421 0.98647 0.95045 1.69929 1.47400 1.20749 1.14341 0.86533 0.78301 0.81959 0.80745 1.20875 1.21355 1.19938 1.46047 1.50971 1.12625 1.07571 1.22489 1.01335 0.99894 0.79692 1.21334 0.94438 0.84375 0.91933 1.21851 0.94630 1.01584 1.01712 1.86881 1.41624 1.20808 1.82333 1.22123 0.99611 1.00875 0.95168 1.22543 0.98226 0.97988 0.82548 1.87815 1.55428 1.62703 1.25718 1.22713 0.90245 0.97997 0.95427 0.92565 0.91612 0.91821 0.88941 0.90921 0.95253 0.88566 0.94216 0.96331 0.92654 0.89646 0.92956 0.88621 0.89381 0.91540 0.91502 0.91408 0.77710 0.90505 0.90546 0.92019 0.92896 0.94177 0.89817 0.93892 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.42 9.99 37.16 0.37 -1.05 16 2 C -0.03 -0.28 6.31 -27.88 -0.18 -0.45 16 3 C 0.15 2.31 7.24 -154.02 -1.11 1.19 16 4 N -0.29 -5.91 12.18 32.99 0.40 -5.51 16 5 N -0.32 -7.28 8.89 30.31 0.27 -7.01 16 6 C 0.40 7.96 6.22 -318.88 -1.98 5.98 16 7 N -0.44 -8.94 2.43 -176.08 -0.43 -9.37 16 8 C 0.04 0.62 8.47 60.07 0.51 1.13 16 9 C 0.23 5.96 2.12 -68.87 -0.15 5.81 16 10 H 0.04 1.33 8.11 -51.93 -0.42 0.90 16 11 C -0.18 -4.70 8.28 37.16 0.31 -4.39 16 12 C -0.50 -13.31 7.81 -34.44 -0.27 -13.58 16 13 H 0.06 1.59 6.81 -52.48 -0.36 1.23 16 14 C 0.06 1.69 5.30 -17.82 -0.09 1.60 16 15 N -0.89 -25.57 11.32 55.43 0.63 -24.94 16 16 Si 0.90 21.03 29.54 -169.99 -5.02 16.01 16 17 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 18 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 19 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 20 N -0.48 -7.40 1.92 -114.08 -0.22 -7.62 16 21 C 0.09 1.00 5.42 -4.04 -0.02 0.98 16 22 C 0.12 1.39 0.84 -90.62 -0.08 1.32 16 23 C -0.14 -1.73 8.18 37.16 0.30 -1.42 16 24 O -0.51 -7.63 9.94 -35.23 -0.35 -7.98 16 25 C -0.14 -1.29 4.85 -26.74 -0.13 -1.42 16 26 C 0.06 0.66 5.35 37.16 0.20 0.86 16 27 O -0.40 -4.37 10.70 -35.23 -0.38 -4.75 16 28 C 0.03 0.27 11.01 101.05 1.11 1.39 16 29 H 0.06 0.49 5.98 -51.93 -0.31 0.18 16 30 H 0.06 0.78 8.01 -51.93 -0.42 0.36 16 31 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.09 0.92 8.14 -51.93 -0.42 0.49 16 33 H 0.07 0.58 6.92 -51.93 -0.36 0.22 16 34 H 0.03 0.56 6.79 -51.93 -0.35 0.20 16 35 H 0.10 1.77 6.29 -51.93 -0.33 1.45 16 36 H 0.04 0.56 6.59 -51.93 -0.34 0.21 16 37 H 0.02 0.44 6.60 -51.93 -0.34 0.10 16 38 H 0.05 1.43 5.29 -51.93 -0.27 1.15 16 39 H 0.08 2.43 6.07 -51.93 -0.32 2.11 16 40 H 0.26 7.19 8.31 -40.82 -0.34 6.86 16 41 H 0.10 0.79 6.72 -51.93 -0.35 0.44 16 42 H 0.09 0.90 6.64 -51.93 -0.34 0.56 16 43 H 0.07 0.65 5.98 -51.93 -0.31 0.34 16 44 H 0.07 0.80 6.05 -51.93 -0.31 0.48 16 45 H 0.07 1.11 7.62 -51.93 -0.40 0.71 16 46 H 0.37 4.94 8.62 45.56 0.39 5.33 16 47 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 48 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 49 H 0.06 0.72 7.82 -51.93 -0.41 0.31 16 50 H 0.05 0.53 6.23 -51.93 -0.32 0.21 16 51 H 0.04 0.30 8.14 -51.93 -0.42 -0.13 16 52 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 53 H 0.04 0.35 8.14 -51.93 -0.42 -0.08 16 LS Contribution 400.07 15.07 6.03 6.03 Total: -1.00 -33.16 400.07 -8.24 -41.40 By element: Atomic # 1 Polarization: 13.75 SS G_CDS: -7.96 Total: 5.79 kcal Atomic # 6 Polarization: -0.84 SS G_CDS: -1.21 Total: -2.05 kcal Atomic # 7 Polarization: -55.10 SS G_CDS: 0.65 Total: -54.44 kcal Atomic # 8 Polarization: -12.00 SS G_CDS: -0.73 Total: -12.73 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.01 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -33.16 -8.24 -41.40 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001401445794.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.246 kcal (2) G-P(sol) polarization free energy of solvation -33.161 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.399 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.848 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds