Wall clock time and date at job start Sat Apr 11 2020 06:11:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50701 * 109.46938 * 2 1 4 4 N 1.30292 * 126.34861 * 82.42233 * 3 2 1 5 5 N 1.28527 * 110.05062 * 180.02562 * 4 3 2 6 6 C 1.31219 * 109.86510 * 359.97438 * 5 4 3 7 7 N 1.38574 * 126.47853 * 179.97438 * 6 5 4 8 8 C 1.46902 * 110.99770 * 107.03764 * 7 6 5 9 9 C 1.46901 * 110.99956 * 343.08713 * 7 6 5 10 10 H 1.09000 * 109.46996 * 309.99650 * 9 7 6 11 11 C 1.53005 * 109.47215 * 69.99470 * 9 7 6 12 12 C 1.50701 * 109.47197 * 189.99746 * 9 7 6 13 13 H 1.08003 * 119.99741 * 354.24258 * 12 9 7 14 14 C 1.37874 * 120.00161 * 174.24843 * 12 9 7 15 15 N 1.31515 * 120.00446 * 159.64257 * 14 12 9 16 16 Si 1.86803 * 120.00019 * 339.64419 * 14 12 9 17 17 H 1.48492 * 109.47377 * 180.02562 * 16 14 12 18 18 H 1.48508 * 109.46852 * 299.99923 * 16 14 12 19 19 H 1.48498 * 109.47329 * 59.99872 * 16 14 12 20 20 N 1.36455 * 107.04928 * 0.22761 * 6 5 4 21 21 C 1.46501 * 127.13341 * 179.77011 * 20 6 5 22 22 C 1.53004 * 109.47038 * 275.32426 * 21 20 6 23 23 C 1.52994 * 109.47062 * 57.31177 * 22 21 20 24 24 O 1.42901 * 109.47551 * 297.30961 * 22 21 20 25 25 C 1.53006 * 109.46848 * 177.31291 * 22 21 20 26 26 C 1.53002 * 109.47250 * 185.00246 * 25 22 21 27 27 O 1.42897 * 109.47136 * 180.02562 * 26 25 22 28 28 C 1.42896 * 113.99674 * 180.02562 * 27 26 25 29 29 H 1.09005 * 109.47268 * 184.24250 * 1 2 3 30 30 H 1.09003 * 109.47468 * 304.23544 * 1 2 3 31 31 H 1.09000 * 109.47607 * 64.23757 * 1 2 3 32 32 H 1.08997 * 109.47063 * 239.99646 * 2 1 3 33 33 H 1.09006 * 109.46892 * 119.99496 * 2 1 3 34 34 H 1.09006 * 109.46997 * 300.83188 * 8 7 6 35 35 H 1.08999 * 109.47481 * 60.83166 * 8 7 6 36 36 H 1.09003 * 109.47304 * 180.83754 * 8 7 6 37 37 H 1.08998 * 109.47107 * 295.13476 * 11 9 7 38 38 H 1.09002 * 109.46840 * 55.13709 * 11 9 7 39 39 H 1.09000 * 109.47080 * 175.13250 * 11 9 7 40 40 H 0.97006 * 119.99319 * 354.93600 * 15 14 12 41 41 H 1.08995 * 109.47479 * 35.32611 * 21 20 6 42 42 H 1.09007 * 109.46676 * 155.32728 * 21 20 6 43 43 H 1.08999 * 109.46903 * 60.00163 * 23 22 21 44 44 H 1.08998 * 109.46971 * 179.97438 * 23 22 21 45 45 H 1.08996 * 109.47342 * 299.99822 * 23 22 21 46 46 H 0.96707 * 113.99646 * 302.40483 * 24 22 21 47 47 H 1.08998 * 109.47090 * 304.99991 * 25 22 21 48 48 H 1.08996 * 109.47150 * 65.00071 * 25 22 21 49 49 H 1.09007 * 109.46951 * 300.00105 * 26 25 22 50 50 H 1.09000 * 109.46746 * 59.99640 * 26 25 22 51 51 H 1.08998 * 109.47766 * 59.99486 * 28 27 26 52 52 H 1.08998 * 109.47241 * 179.97438 * 28 27 26 53 53 H 1.09006 * 109.47176 * 299.99816 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.1592 2.1950 1.0402 5 7 2.6147 3.3425 0.6826 6 6 2.8049 3.3618 -0.6156 7 7 3.2854 4.4258 -1.3620 8 6 4.6632 4.1772 -1.8068 9 6 3.1948 5.6824 -0.6065 10 1 2.1898 5.7892 -0.1982 11 6 4.2108 5.6642 0.5374 12 6 3.4905 6.8419 -1.5226 13 1 3.8131 6.6598 -2.5372 14 6 3.3495 8.1350 -1.0656 15 7 3.9647 9.1209 -1.6813 16 14 2.2844 8.4867 0.4282 17 1 2.2971 9.9440 0.7131 18 1 0.8917 8.0479 0.1575 19 1 2.8170 7.7479 1.6010 20 7 2.4348 2.1380 -1.0924 21 6 2.4648 1.6857 -2.4855 22 6 1.1808 2.1251 -3.1921 23 6 1.0400 3.6455 -3.0952 24 8 0.0564 1.5019 -2.5681 25 6 1.2414 1.7113 -4.6639 26 6 0.0160 2.2585 -5.3985 27 8 0.0723 1.8715 -6.7730 28 6 -1.0317 2.3349 -7.5529 29 1 -0.3634 -1.0249 0.0760 30 1 -0.3634 0.5782 0.8496 31 1 -0.3634 0.4466 -0.9255 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 5.3039 4.0266 -0.9379 35 1 4.6873 3.2865 -2.4346 36 1 5.0210 5.0340 -2.3778 37 1 3.9460 4.8795 1.2461 38 1 5.2058 5.4711 0.1365 39 1 4.2044 6.6290 1.0445 40 1 4.5754 8.9312 -2.4107 41 1 3.3256 2.1230 -2.9911 42 1 2.5408 0.5986 -2.5129 43 1 1.8976 4.1208 -3.5713 44 1 0.1255 3.9585 -3.5990 45 1 0.9968 3.9403 -2.0468 46 1 0.0967 0.5357 -2.5597 47 1 2.1469 2.1142 -5.1176 48 1 1.2522 0.6237 -4.7354 49 1 -0.8896 1.8556 -4.9448 50 1 0.0053 3.3461 -5.3270 51 1 -1.0636 3.4241 -7.5265 52 1 -0.9144 2.0001 -8.5836 53 1 -1.9592 1.9343 -7.1438 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001401445796.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:59 Heat of formation + Delta-G solvation = -20.920180 kcal Electronic energy + Delta-G solvation = -32888.099206 eV Core-core repulsion = 28796.522531 eV Total energy + Delta-G solvation = -4091.576675 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.226 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -43.99138 -40.08745 -39.22357 -38.47764 -35.67310 -35.19322 -34.54126 -33.53797 -31.46562 -30.13860 -30.03261 -28.50934 -27.22463 -27.10743 -26.63626 -24.92154 -24.37397 -23.17065 -21.61876 -21.18059 -20.95098 -19.41899 -18.41894 -17.91859 -17.56517 -17.22605 -17.08622 -16.58742 -16.39327 -15.89923 -15.77893 -15.52266 -15.40526 -15.26090 -15.06567 -14.80902 -14.36557 -14.25397 -13.99634 -13.54309 -13.36504 -13.32961 -13.27185 -13.08873 -13.00531 -12.90599 -12.65273 -12.60871 -12.46470 -12.30318 -12.20043 -12.15706 -12.04840 -11.85788 -11.85177 -11.67684 -11.40239 -11.30327 -10.97822 -10.63515 -10.60528 -10.41548 -10.35969 -9.12757 -8.73517 -6.32108 0.86754 1.34529 1.45674 1.46394 1.67213 1.93657 2.43589 2.67841 2.94744 3.03219 3.14815 3.45291 3.51923 3.58684 3.88449 3.94762 3.97753 4.06170 4.18028 4.27387 4.34811 4.37702 4.41540 4.43010 4.50254 4.52256 4.55605 4.56479 4.68563 4.73168 4.80361 4.82474 4.86082 4.87728 4.90465 4.94097 5.01621 5.03917 5.05464 5.10350 5.19576 5.26319 5.39347 5.40422 5.54758 5.64196 5.89575 5.96392 6.10662 6.18275 6.53162 6.66568 6.76336 7.36948 7.89972 8.65584 Molecular weight = 340.23amu Principal moments of inertia in cm(-1) A = 0.009215 B = 0.004541 C = 0.003435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3037.775446 B = 6164.334890 C = 8149.621585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.026 4.026 3 C 0.189 3.811 4 N -0.340 5.340 5 N -0.366 5.366 6 C 0.362 3.638 7 N -0.442 5.442 8 C 0.039 3.961 9 C 0.217 3.783 10 H 0.015 0.985 11 C -0.176 4.176 12 C -0.583 4.583 13 H 0.046 0.954 14 C 0.002 3.998 15 N -0.928 5.928 16 Si 1.060 2.940 17 H -0.283 1.283 18 H -0.278 1.278 19 H -0.259 1.259 20 N -0.462 5.462 21 C 0.078 3.922 22 C 0.137 3.863 23 C -0.131 4.131 24 O -0.557 6.557 25 C -0.127 4.127 26 C 0.063 3.937 27 O -0.411 6.411 28 C 0.026 3.974 29 H 0.094 0.906 30 H 0.031 0.969 31 H 0.075 0.925 32 H 0.115 0.885 33 H 0.100 0.900 34 H 0.029 0.971 35 H 0.085 0.915 36 H 0.077 0.923 37 H 0.059 0.941 38 H 0.046 0.954 39 H 0.043 0.957 40 H 0.260 0.740 41 H 0.107 0.893 42 H 0.142 0.858 43 H 0.071 0.929 44 H 0.055 0.945 45 H 0.032 0.968 46 H 0.388 0.612 47 H 0.084 0.916 48 H 0.104 0.896 49 H 0.059 0.941 50 H 0.040 0.960 51 H 0.039 0.961 52 H 0.100 0.900 53 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.791 -24.899 -8.433 27.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.066 4.066 3 C -0.079 4.079 4 N -0.178 5.178 5 N -0.210 5.210 6 C 0.004 3.996 7 N -0.165 5.165 8 C -0.108 4.108 9 C 0.110 3.890 10 H 0.033 0.967 11 C -0.235 4.235 12 C -0.621 4.621 13 H 0.065 0.935 14 C -0.199 4.199 15 N -0.564 5.564 16 Si 0.884 3.116 17 H -0.208 1.208 18 H -0.204 1.204 19 H -0.184 1.184 20 N -0.156 5.156 21 C -0.044 4.044 22 C 0.096 3.904 23 C -0.188 4.188 24 O -0.367 6.367 25 C -0.165 4.165 26 C -0.013 4.013 27 O -0.331 6.331 28 C -0.070 4.070 29 H 0.113 0.887 30 H 0.050 0.950 31 H 0.093 0.907 32 H 0.133 0.867 33 H 0.118 0.882 34 H 0.047 0.953 35 H 0.104 0.896 36 H 0.096 0.904 37 H 0.078 0.922 38 H 0.065 0.935 39 H 0.062 0.938 40 H 0.069 0.931 41 H 0.126 0.874 42 H 0.160 0.840 43 H 0.090 0.910 44 H 0.074 0.926 45 H 0.051 0.949 46 H 0.240 0.760 47 H 0.103 0.897 48 H 0.123 0.877 49 H 0.077 0.923 50 H 0.058 0.942 51 H 0.058 0.942 52 H 0.119 0.881 53 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -7.722 -22.638 -6.496 24.785 hybrid contribution 1.161 -0.899 -1.612 2.181 sum -6.561 -23.537 -8.108 25.744 Atomic orbital electron populations 1.21933 0.92826 1.03400 1.02714 1.20213 0.97125 0.83364 1.05887 1.25551 1.01535 0.98917 0.81943 1.73827 1.18992 0.98584 1.26436 1.74599 1.22073 1.15223 1.09083 1.22894 1.01292 0.86600 0.88814 1.59203 1.21990 0.98938 1.36398 1.22400 0.85984 1.02762 0.99677 1.19243 0.94271 0.84950 0.90577 0.96702 1.22739 0.99982 1.01076 0.99691 1.21930 1.49859 0.91345 0.98936 0.93532 1.26460 0.97360 0.92526 1.03556 1.70958 1.26639 1.34992 1.23794 0.83827 0.76265 0.76261 0.75207 1.20832 1.20408 1.18370 1.46107 1.49345 1.10579 1.09595 1.22962 1.00567 1.03577 0.77270 1.21275 0.85012 0.93289 0.90852 1.21726 1.02098 0.93496 1.01475 1.86746 1.43626 1.25394 1.80931 1.21975 0.98735 1.03521 0.92294 1.22502 0.98976 0.98429 0.81409 1.87785 1.46934 1.77270 1.21117 1.22897 0.88853 0.98800 0.96483 0.88698 0.95005 0.90690 0.86663 0.88194 0.95269 0.89617 0.90449 0.92244 0.93459 0.93807 0.93125 0.87450 0.83985 0.90979 0.92608 0.94910 0.75968 0.89746 0.87724 0.92312 0.94216 0.94229 0.88144 0.93143 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.16 9.87 71.98 0.71 -1.45 16 2 C -0.03 -0.40 6.37 29.85 0.19 -0.21 16 3 C 0.19 5.28 7.32 137.64 1.01 6.29 16 4 N -0.34 -13.15 12.18 -49.54 -0.60 -13.75 16 5 N -0.37 -16.06 9.29 -58.01 -0.54 -16.60 16 6 C 0.36 13.84 4.89 260.11 1.27 15.11 16 7 N -0.44 -17.90 3.13 -710.97 -2.23 -20.13 16 8 C 0.04 1.36 8.57 127.69 1.09 2.45 16 9 C 0.22 10.65 1.62 44.17 0.07 10.72 16 10 H 0.02 0.82 6.61 -2.39 -0.02 0.80 16 11 C -0.18 -8.37 8.22 71.98 0.59 -7.78 16 12 C -0.58 -32.04 8.26 25.60 0.21 -31.83 16 13 H 0.05 2.70 7.16 -2.91 -0.02 2.68 16 14 C 0.00 0.12 5.26 84.65 0.45 0.57 16 15 N -0.93 -56.77 13.70 21.45 0.29 -56.48 16 16 Si 1.06 52.92 26.38 68.60 1.81 54.73 16 17 H -0.28 -13.92 7.11 99.48 0.71 -13.21 16 18 H -0.28 -13.55 7.11 99.48 0.71 -12.84 16 19 H -0.26 -12.29 5.91 99.48 0.59 -11.70 16 20 N -0.46 -12.83 2.49 -514.84 -1.28 -14.11 16 21 C 0.08 1.37 5.21 86.38 0.45 1.82 16 22 C 0.14 2.59 0.86 -10.79 -0.01 2.58 16 23 C -0.13 -3.88 7.09 71.98 0.51 -3.36 16 24 O -0.56 -9.85 10.54 -148.98 -1.57 -11.42 16 25 C -0.13 -1.87 4.87 30.60 0.15 -1.72 16 26 C 0.06 1.18 5.35 71.98 0.38 1.56 16 27 O -0.41 -8.17 10.70 -148.98 -1.59 -9.77 16 28 C 0.03 0.38 11.01 113.37 1.25 1.63 16 29 H 0.09 0.76 8.14 -2.38 -0.02 0.74 16 30 H 0.03 0.67 8.14 -2.39 -0.02 0.65 16 31 H 0.07 1.08 4.19 -2.39 -0.01 1.07 16 32 H 0.12 0.77 6.98 -2.39 -0.02 0.76 16 33 H 0.10 1.43 8.14 -2.38 -0.02 1.41 16 34 H 0.03 1.05 6.40 -2.38 -0.02 1.03 16 35 H 0.09 2.28 6.19 -2.39 -0.01 2.26 16 36 H 0.08 2.98 6.63 -2.39 -0.02 2.97 16 37 H 0.06 2.82 5.89 -2.39 -0.01 2.80 16 38 H 0.05 2.14 6.15 -2.39 -0.01 2.12 16 39 H 0.04 2.16 5.17 -2.39 -0.01 2.14 16 40 H 0.26 15.81 8.73 -92.70 -0.81 15.00 16 41 H 0.11 1.88 6.14 -2.39 -0.01 1.86 16 42 H 0.14 1.11 6.98 -2.38 -0.02 1.09 16 43 H 0.07 2.29 7.88 -2.39 -0.02 2.27 16 44 H 0.05 1.62 6.34 -2.39 -0.02 1.61 16 45 H 0.03 1.25 5.84 -2.39 -0.01 1.23 16 46 H 0.39 3.21 7.54 -74.05 -0.56 2.65 16 47 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 48 H 0.10 0.95 8.14 -2.39 -0.02 0.93 16 49 H 0.06 1.05 7.82 -2.38 -0.02 1.03 16 50 H 0.04 0.88 6.34 -2.39 -0.02 0.86 16 51 H 0.04 0.60 8.14 -2.39 -0.02 0.58 16 52 H 0.10 1.14 8.14 -2.39 -0.02 1.12 16 53 H 0.05 0.64 8.14 -2.38 -0.02 0.62 16 Total: -1.00 -78.15 393.42 2.83 -75.32 By element: Atomic # 1 Polarization: 15.61 SS G_CDS: 0.22 Total: 15.83 kcal Atomic # 6 Polarization: -11.94 SS G_CDS: 8.33 Total: -3.62 kcal Atomic # 7 Polarization: -116.72 SS G_CDS: -4.36 Total: -121.08 kcal Atomic # 8 Polarization: -18.02 SS G_CDS: -3.16 Total: -21.19 kcal Atomic # 14 Polarization: 52.92 SS G_CDS: 1.81 Total: 54.73 kcal Total: -78.15 2.83 -75.32 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001401445796.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.397 kcal (2) G-P(sol) polarization free energy of solvation -78.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.753 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.317 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.920 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds