Wall clock time and date at job start Sat Apr 11 2020 06:12:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50700 * 109.47083 * 2 1 4 4 N 1.30298 * 126.35070 * 78.23546 * 3 2 1 5 5 N 1.28524 * 110.05334 * 179.97438 * 4 3 2 6 6 C 1.31217 * 109.86582 * 359.97438 * 5 4 3 7 7 N 1.38573 * 126.47835 * 180.02562 * 6 5 4 8 8 C 1.46903 * 111.00478 * 107.30242 * 7 6 5 9 9 C 1.50703 * 109.46710 * 303.35990 * 8 7 6 10 10 H 1.08001 * 120.00370 * 4.64663 * 9 8 7 11 11 C 1.37881 * 119.99733 * 184.64508 * 9 8 7 12 12 N 1.31511 * 119.99788 * 359.97438 * 11 9 8 13 13 Si 1.86797 * 120.00022 * 179.97438 * 11 9 8 14 14 H 1.48497 * 109.46990 * 0.02562 * 13 11 9 15 15 H 1.48498 * 109.47244 * 119.99980 * 13 11 9 16 16 H 1.48502 * 109.46979 * 239.99990 * 13 11 9 17 17 C 1.46907 * 110.99627 * 343.34964 * 7 6 5 18 18 C 1.53006 * 109.46806 * 194.84924 * 17 7 6 19 19 O 1.42896 * 109.46897 * 62.82006 * 18 17 7 20 20 C 1.42898 * 113.99892 * 179.97438 * 19 18 17 21 21 N 1.36455 * 107.04948 * 0.02562 * 6 5 4 22 22 C 1.46506 * 127.13445 * 180.02562 * 21 6 5 23 23 C 1.52995 * 109.46928 * 277.39660 * 22 21 6 24 24 C 1.53002 * 109.47186 * 181.30032 * 23 22 21 25 25 C 1.53007 * 109.47179 * 301.29811 * 23 22 21 26 26 O 1.42897 * 109.47528 * 61.30089 * 23 22 21 27 27 C 1.42905 * 113.99833 * 180.02562 * 26 23 22 28 28 H 1.08993 * 109.47107 * 187.43814 * 1 2 3 29 29 H 1.09004 * 109.46572 * 307.43853 * 1 2 3 30 30 H 1.08997 * 109.46869 * 67.43493 * 1 2 3 31 31 H 1.08998 * 109.47279 * 240.00167 * 2 1 3 32 32 H 1.09001 * 109.47126 * 119.99881 * 2 1 3 33 33 H 1.08997 * 109.46702 * 63.35355 * 8 7 6 34 34 H 1.08991 * 109.47038 * 183.36122 * 8 7 6 35 35 H 0.96997 * 120.00073 * 179.97438 * 12 11 9 36 36 H 1.08994 * 109.46795 * 314.84874 * 17 7 6 37 37 H 1.08992 * 109.46939 * 74.85203 * 17 7 6 38 38 H 1.09004 * 109.46510 * 182.81547 * 18 17 7 39 39 H 1.08992 * 109.47160 * 302.81680 * 18 17 7 40 40 H 1.09002 * 109.47369 * 59.99989 * 20 19 18 41 41 H 1.09004 * 109.47341 * 179.97438 * 20 19 18 42 42 H 1.09003 * 109.47511 * 299.99950 * 20 19 18 43 43 H 1.09004 * 109.47050 * 37.39619 * 22 21 6 44 44 H 1.09001 * 109.47228 * 157.39396 * 22 21 6 45 45 H 1.09006 * 109.47096 * 59.99528 * 24 23 22 46 46 H 1.09001 * 109.47485 * 179.97438 * 24 23 22 47 47 H 1.08995 * 109.46940 * 300.00169 * 24 23 22 48 48 H 1.08994 * 109.46634 * 62.92801 * 25 23 22 49 49 H 1.08999 * 109.47025 * 182.93083 * 25 23 22 50 50 H 1.09007 * 109.46613 * 302.93172 * 25 23 22 51 51 H 1.09005 * 109.46692 * 179.97438 * 27 26 23 52 52 H 1.08996 * 109.47249 * 299.99250 * 27 26 23 53 53 H 1.08997 * 109.47617 * 60.00201 * 27 26 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.0880 2.2203 1.0274 5 7 2.5691 3.3586 0.6744 6 6 2.8489 3.3463 -0.6075 7 7 3.3826 4.3916 -1.3443 8 6 4.7855 4.1285 -1.6917 9 6 5.5771 3.8832 -0.4330 10 1 5.0745 3.8447 0.5222 11 6 6.9431 3.7079 -0.5008 12 7 7.5549 3.7543 -1.6640 13 14 7.9244 3.4047 1.0594 14 1 7.0075 3.3979 2.2274 15 1 8.6131 2.0925 0.9638 16 1 8.9328 4.4819 1.2271 17 6 3.2484 5.6652 -0.6247 18 6 3.4971 6.8254 -1.5907 19 8 2.5015 6.8135 -2.6156 20 6 2.6427 7.8628 -3.5754 21 7 2.5151 2.1097 -1.0780 22 6 2.6473 1.6212 -2.4529 23 6 1.4434 2.0832 -3.2763 24 6 1.5653 1.5459 -4.7036 25 6 0.1568 1.5533 -2.6400 26 8 1.4067 3.5114 -3.3065 27 6 0.3136 4.0490 -4.0538 28 1 -0.3633 -1.0189 0.1330 29 1 -0.3632 0.6248 0.8160 30 1 -0.3633 0.3943 -0.9490 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 4.8421 3.2493 -2.3336 34 1 5.1972 4.9897 -2.2178 35 1 8.5159 3.6314 -1.7117 36 1 2.2428 5.7451 -0.2120 37 1 3.9774 5.7037 0.1847 38 1 3.4469 7.7685 -1.0463 39 1 4.4837 6.7180 -2.0412 40 1 3.6117 7.7773 -4.0672 41 1 1.8499 7.7840 -4.3193 42 1 2.5746 8.8273 -3.0720 43 1 3.5623 2.0179 -2.8930 44 1 2.6885 0.5320 -2.4491 45 1 1.5933 0.4564 -4.6806 46 1 0.7073 1.8746 -5.2902 47 1 2.4818 1.9233 -5.1569 48 1 0.0436 1.9772 -1.6423 49 1 -0.6968 1.8384 -3.2550 50 1 0.2071 0.4667 -2.5695 51 1 0.3566 5.1379 -4.0279 52 1 0.3766 3.7070 -5.0868 53 1 -0.6262 3.7123 -3.6162 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001411742307.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:12:04 Heat of formation + Delta-G solvation = -15.095554 kcal Electronic energy + Delta-G solvation = -33743.467518 eV Core-core repulsion = 29652.143418 eV Total energy + Delta-G solvation = -4091.324100 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.226 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -43.74566 -39.88582 -39.34134 -37.78079 -36.14053 -34.81883 -34.38036 -33.16074 -30.97010 -30.06714 -28.50561 -28.40644 -27.97903 -27.01456 -26.81105 -25.31481 -24.46630 -23.29306 -21.65719 -21.03556 -20.69671 -18.83772 -18.09440 -17.61961 -17.41700 -17.27303 -16.94807 -16.69347 -16.07062 -15.95948 -15.85088 -15.73031 -15.38971 -15.13408 -14.82343 -14.64683 -14.20394 -14.12595 -13.86034 -13.48932 -13.32603 -13.21788 -13.10605 -13.09300 -12.84507 -12.81661 -12.78973 -12.59817 -12.54472 -12.43273 -12.31293 -12.19358 -12.08422 -11.89674 -11.72381 -11.63320 -11.57807 -11.12826 -10.71433 -10.62510 -10.42947 -10.30284 -10.22145 -8.91700 -8.23609 -6.39821 1.12308 1.27275 1.30579 1.44215 1.58221 2.11861 2.32560 2.92955 3.00547 3.03057 3.15738 3.54491 3.67834 3.79704 4.02493 4.05038 4.12760 4.18294 4.25892 4.40288 4.41826 4.46190 4.50765 4.55060 4.59235 4.62559 4.65441 4.67109 4.69628 4.72276 4.78052 4.87262 4.88192 4.91374 4.96747 5.01948 5.03802 5.06249 5.15024 5.20678 5.26911 5.27954 5.31910 5.38786 5.45103 5.67620 5.82701 6.00367 6.08202 6.43141 6.53899 6.66486 6.78775 7.30501 8.06902 8.78714 Molecular weight = 340.23amu Principal moments of inertia in cm(-1) A = 0.008548 B = 0.005964 C = 0.004371 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3274.964692 B = 4694.061036 C = 6404.858851 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.028 4.028 3 C 0.167 3.833 4 N -0.335 5.335 5 N -0.385 5.385 6 C 0.413 3.587 7 N -0.428 5.428 8 C 0.216 3.784 9 C -0.558 4.558 10 H 0.049 0.951 11 C 0.029 3.971 12 N -0.913 5.913 13 Si 0.944 3.056 14 H -0.285 1.285 15 H -0.275 1.275 16 H -0.269 1.269 17 C 0.087 3.913 18 C 0.081 3.919 19 O -0.389 6.389 20 C 0.028 3.972 21 N -0.465 5.465 22 C 0.119 3.881 23 C 0.094 3.906 24 C -0.167 4.167 25 C -0.174 4.174 26 O -0.372 6.372 27 C 0.033 3.967 28 H 0.093 0.907 29 H 0.039 0.961 30 H 0.076 0.924 31 H 0.103 0.897 32 H 0.095 0.905 33 H 0.012 0.988 34 H 0.032 0.968 35 H 0.267 0.733 36 H 0.065 0.935 37 H 0.049 0.951 38 H 0.071 0.929 39 H 0.040 0.960 40 H 0.034 0.966 41 H 0.097 0.903 42 H 0.049 0.951 43 H 0.076 0.924 44 H 0.133 0.867 45 H 0.091 0.909 46 H 0.079 0.921 47 H 0.055 0.945 48 H 0.041 0.959 49 H 0.075 0.925 50 H 0.096 0.904 51 H 0.075 0.925 52 H 0.055 0.945 53 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.236 -5.046 -9.234 18.517 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.068 4.068 3 C -0.102 4.102 4 N -0.173 5.173 5 N -0.229 5.229 6 C 0.055 3.945 7 N -0.150 5.150 8 C 0.091 3.909 9 C -0.597 4.597 10 H 0.067 0.933 11 C -0.171 4.171 12 N -0.553 5.553 13 Si 0.770 3.230 14 H -0.210 1.210 15 H -0.201 1.201 16 H -0.194 1.194 17 C -0.041 4.041 18 C 0.004 3.996 19 O -0.308 6.308 20 C -0.068 4.068 21 N -0.158 5.158 22 C -0.004 4.004 23 C 0.054 3.946 24 C -0.225 4.225 25 C -0.231 4.231 26 O -0.291 6.291 27 C -0.063 4.063 28 H 0.111 0.889 29 H 0.059 0.941 30 H 0.094 0.906 31 H 0.121 0.879 32 H 0.114 0.886 33 H 0.030 0.970 34 H 0.050 0.950 35 H 0.076 0.924 36 H 0.084 0.916 37 H 0.067 0.933 38 H 0.089 0.911 39 H 0.058 0.942 40 H 0.053 0.947 41 H 0.115 0.885 42 H 0.068 0.932 43 H 0.095 0.905 44 H 0.151 0.849 45 H 0.110 0.890 46 H 0.098 0.902 47 H 0.074 0.926 48 H 0.060 0.940 49 H 0.094 0.906 50 H 0.115 0.885 51 H 0.093 0.907 52 H 0.073 0.927 53 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -15.446 -4.506 -8.283 18.097 hybrid contribution 1.733 -0.065 0.183 1.744 sum -13.713 -4.571 -8.100 16.569 Atomic orbital electron populations 1.22089 0.92409 1.03614 1.03132 1.20137 0.97631 0.83859 1.05131 1.25347 1.02838 0.99133 0.82884 1.73661 1.19410 0.98489 1.25786 1.74471 1.23060 1.16608 1.08738 1.22418 0.97949 0.86080 0.88070 1.59076 1.19135 0.98625 1.38184 1.19507 0.80341 0.96348 0.94719 1.22010 0.93461 1.49877 0.94387 0.93321 1.25514 0.98479 0.94615 0.98536 1.70009 1.10190 1.50124 1.24948 0.85725 0.78677 0.78340 0.80275 1.21029 1.20098 1.19431 1.21773 1.00869 0.87059 0.94370 1.22405 0.91205 0.96725 0.89229 1.87980 1.51231 1.52151 1.39460 1.22840 1.01780 0.90033 0.92147 1.45976 1.48343 1.10981 1.10531 1.22182 0.99625 1.01276 0.77296 1.21889 0.94149 0.83013 0.95577 1.22300 1.03156 1.03001 0.94040 1.22657 0.97193 1.02757 1.00477 1.88344 1.48618 1.18556 1.73559 1.22739 0.89101 0.99251 0.95213 0.88865 0.94142 0.90585 0.87865 0.88639 0.96976 0.94962 0.92366 0.91650 0.93317 0.91059 0.94206 0.94746 0.88466 0.93211 0.90526 0.84913 0.88990 0.90249 0.92572 0.94024 0.90629 0.88539 0.90692 0.92702 0.94132 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.93 9.47 71.98 0.68 -2.25 16 2 C -0.03 -0.66 6.24 29.85 0.19 -0.47 16 3 C 0.17 6.10 6.20 137.64 0.85 6.95 16 4 N -0.33 -15.32 12.18 -49.53 -0.60 -15.92 16 5 N -0.38 -19.38 10.86 -58.01 -0.63 -20.01 16 6 C 0.41 19.16 5.13 260.12 1.33 20.50 16 7 N -0.43 -19.76 3.98 -710.36 -2.82 -22.59 16 8 C 0.22 11.27 4.96 85.56 0.42 11.69 16 9 C -0.56 -31.92 7.54 25.60 0.19 -31.72 16 10 H 0.05 2.98 6.44 -2.91 -0.02 2.97 16 11 C 0.03 1.66 5.46 84.66 0.46 2.13 16 12 N -0.91 -52.77 13.29 21.45 0.28 -52.49 16 13 Si 0.94 45.98 29.54 68.60 2.03 48.01 16 14 H -0.28 -14.50 7.11 99.48 0.71 -13.80 16 15 H -0.28 -12.96 7.11 99.48 0.71 -12.26 16 16 H -0.27 -12.49 7.11 99.48 0.71 -11.78 16 17 C 0.09 3.85 4.71 86.30 0.41 4.25 16 18 C 0.08 3.03 6.05 71.98 0.44 3.47 16 19 O -0.39 -13.76 10.62 -148.98 -1.58 -15.35 16 20 C 0.03 0.73 11.01 113.37 1.25 1.98 16 21 N -0.46 -17.77 2.30 -514.84 -1.18 -18.95 16 22 C 0.12 3.58 5.23 86.38 0.45 4.03 16 23 C 0.09 2.33 0.90 -10.79 -0.01 2.32 16 24 C -0.17 -2.99 8.25 71.98 0.59 -2.39 16 25 C -0.17 -3.54 5.96 71.98 0.43 -3.11 16 26 O -0.37 -11.85 9.10 -148.98 -1.36 -13.20 16 27 C 0.03 0.81 10.21 113.37 1.16 1.96 16 28 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 29 H 0.04 0.96 8.13 -2.39 -0.02 0.94 16 30 H 0.08 1.34 3.58 -2.39 -0.01 1.33 16 31 H 0.10 1.78 6.86 -2.39 -0.02 1.77 16 32 H 0.10 2.17 8.14 -2.39 -0.02 2.15 16 33 H 0.01 0.67 6.13 -2.39 -0.01 0.66 16 34 H 0.03 1.78 6.36 -2.39 -0.02 1.77 16 35 H 0.27 14.52 8.31 -92.71 -0.77 13.75 16 36 H 0.06 2.90 7.83 -2.39 -0.02 2.89 16 37 H 0.05 2.37 6.82 -2.39 -0.02 2.36 16 38 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 39 H 0.04 1.62 6.49 -2.39 -0.02 1.60 16 40 H 0.03 0.89 8.14 -2.39 -0.02 0.87 16 41 H 0.10 2.06 8.14 -2.38 -0.02 2.04 16 42 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 43 H 0.08 2.80 6.10 -2.38 -0.01 2.79 16 44 H 0.13 2.89 6.88 -2.39 -0.02 2.88 16 45 H 0.09 1.15 8.14 -2.38 -0.02 1.13 16 46 H 0.08 1.19 6.55 -2.39 -0.02 1.17 16 47 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 48 H 0.04 1.13 5.71 -2.39 -0.01 1.11 16 49 H 0.07 1.30 6.70 -2.39 -0.02 1.29 16 50 H 0.10 1.40 6.87 -2.38 -0.02 1.38 16 51 H 0.07 1.94 8.14 -2.38 -0.02 1.92 16 52 H 0.05 1.07 6.42 -2.39 -0.02 1.05 16 53 H 0.04 0.88 6.48 -2.39 -0.02 0.87 16 Total: -1.00 -76.58 402.44 3.89 -72.69 By element: Atomic # 1 Polarization: 17.56 SS G_CDS: 0.91 Total: 18.47 kcal Atomic # 6 Polarization: 10.49 SS G_CDS: 8.85 Total: 19.34 kcal Atomic # 7 Polarization: -125.00 SS G_CDS: -4.95 Total: -129.96 kcal Atomic # 8 Polarization: -25.61 SS G_CDS: -2.94 Total: -28.55 kcal Atomic # 14 Polarization: 45.98 SS G_CDS: 2.03 Total: 48.01 kcal Total: -76.58 3.89 -72.69 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001411742307.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.594 kcal (2) G-P(sol) polarization free energy of solvation -76.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.891 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.690 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.096 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds