Wall clock time and date at job start Sat Apr 11 2020 06:12:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42902 * 114.00051 * 2 1 4 4 C 1.52998 * 109.47249 * 180.02562 * 3 2 1 5 5 N 1.46893 * 109.47068 * 63.44795 * 4 3 2 6 6 C 1.46899 * 111.00029 * 72.14474 * 5 4 3 7 7 C 1.50702 * 109.46862 * 63.21854 * 6 5 4 8 8 H 1.07997 * 120.00522 * 4.77719 * 7 6 5 9 9 C 1.37881 * 119.99721 * 184.77138 * 7 6 5 10 10 N 1.31517 * 119.99730 * 179.97438 * 9 7 6 11 11 Si 1.86802 * 120.00075 * 0.02562 * 9 7 6 12 12 H 1.48494 * 109.47227 * 90.00068 * 11 9 7 13 13 H 1.48501 * 109.46997 * 210.00157 * 11 9 7 14 14 H 1.48500 * 109.46852 * 329.99723 * 11 9 7 15 15 C 1.38591 * 111.00100 * 196.09726 * 5 4 3 16 16 N 1.31227 * 126.46938 * 343.43410 * 15 5 4 17 17 N 1.28522 * 109.85670 * 180.02562 * 16 15 5 18 18 C 1.30293 * 110.05593 * 359.97438 * 17 16 15 19 19 C 1.50709 * 126.34783 * 179.97438 * 18 17 16 20 20 C 1.53001 * 109.46814 * 60.02583 * 19 18 17 21 21 C 1.53001 * 109.46866 * 300.02783 * 19 18 17 22 22 N 1.36447 * 126.47670 * 163.74678 * 15 5 4 23 23 C 1.46508 * 127.13627 * 0.02562 * 22 15 5 24 24 C 1.52993 * 109.46783 * 275.61520 * 23 22 15 25 25 C 1.53000 * 109.46805 * 184.99938 * 24 23 22 26 26 C 1.52992 * 109.47555 * 305.00015 * 24 23 22 27 27 O 1.42906 * 109.47266 * 65.00292 * 24 23 22 28 28 H 1.09004 * 109.47160 * 300.00317 * 1 2 3 29 29 H 1.08995 * 109.47461 * 59.99909 * 1 2 3 30 30 H 1.08995 * 109.47432 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.46956 * 59.99760 * 3 2 1 32 32 H 1.09001 * 109.46871 * 299.99898 * 3 2 1 33 33 H 1.09010 * 109.46624 * 303.45337 * 4 3 2 34 34 H 1.08995 * 109.47327 * 183.45381 * 4 3 2 35 35 H 1.09002 * 109.47374 * 183.21497 * 6 5 4 36 36 H 1.08999 * 109.47107 * 303.21805 * 6 5 4 37 37 H 0.97004 * 119.99385 * 179.97438 * 10 9 7 38 38 H 1.08998 * 109.46801 * 180.02562 * 19 18 17 39 39 H 1.09002 * 109.47122 * 60.00323 * 20 19 18 40 40 H 1.08997 * 109.46913 * 299.99876 * 20 19 18 41 41 H 1.08997 * 109.46926 * 180.02562 * 20 19 18 42 42 H 1.09004 * 109.46799 * 299.99512 * 21 19 18 43 43 H 1.08993 * 109.47149 * 59.99722 * 21 19 18 44 44 H 1.09000 * 109.46532 * 180.02562 * 21 19 18 45 45 H 1.09001 * 109.47006 * 35.61740 * 23 22 15 46 46 H 1.08997 * 109.46904 * 155.61575 * 23 22 15 47 47 H 1.09000 * 109.47471 * 60.00194 * 25 24 23 48 48 H 1.09009 * 109.47077 * 180.02562 * 25 24 23 49 49 H 1.09005 * 109.47295 * 299.99790 * 25 24 23 50 50 H 1.09005 * 109.47443 * 60.00145 * 26 24 23 51 51 H 1.09000 * 109.47339 * 180.02562 * 26 24 23 52 52 H 1.09001 * 109.47546 * 300.00067 * 26 24 23 53 53 H 0.96705 * 113.99740 * 59.99397 * 27 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 3.9742 0.5291 -1.2398 6 6 3.8231 1.4272 -2.3925 7 6 4.7179 2.6268 -2.2152 8 1 5.3933 2.6771 -1.3740 9 6 4.6743 3.6601 -3.1270 10 7 5.4548 4.7072 -2.9721 11 14 3.5056 3.5733 -4.5818 12 1 2.2028 4.1794 -4.2069 13 1 4.0862 4.3175 -5.7282 14 1 3.2989 2.1540 -4.9666 15 6 5.2804 0.0796 -1.1283 16 7 6.1577 0.4481 -0.2246 17 7 7.2691 -0.1674 -0.4187 18 6 7.1676 -0.9590 -1.4486 19 6 8.2502 -1.8509 -1.9998 20 6 8.6861 -2.8480 -0.9243 21 6 9.4488 -0.9979 -2.4202 22 7 5.8990 -0.8254 -1.9408 23 6 5.3226 -1.5131 -3.0990 24 6 4.5590 -2.7524 -2.6280 25 6 4.0631 -3.5382 -3.8435 26 6 5.4872 -3.6367 -1.7931 27 8 3.4419 -2.3500 -1.8328 28 1 -0.3634 0.5139 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 1.6885 1.8464 0.8900 32 1 1.6886 1.8464 -0.8900 33 1 3.8532 0.5910 0.8566 34 1 3.9787 2.1785 0.0613 35 1 4.1011 0.8982 -3.3041 36 1 2.7860 1.7549 -2.4643 37 1 5.4243 5.4340 -3.6138 38 1 7.8687 -2.3931 -2.8649 39 1 7.8322 -3.4557 -0.6248 40 1 9.0676 -2.3057 -0.0592 41 1 9.4694 -3.4928 -1.3228 42 1 9.1382 -0.2875 -3.1864 43 1 9.8302 -0.4556 -1.5551 44 1 10.2316 -1.6429 -2.8193 45 1 4.6394 -0.8407 -3.6179 46 1 6.1210 -1.8142 -3.7771 47 1 4.9151 -3.8452 -4.4502 48 1 3.5186 -4.4210 -3.5081 49 1 3.4017 -2.9082 -4.4384 50 1 5.8406 -3.0769 -0.9271 51 1 4.9433 -4.5199 -1.4580 52 1 6.3393 -3.9437 -2.3996 53 1 2.8101 -1.7856 -2.2991 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001411862755.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:12:19 Heat of formation + Delta-G solvation = -35.274909 kcal Electronic energy + Delta-G solvation = -33513.624046 eV Core-core repulsion = 29421.424904 eV Total energy + Delta-G solvation = -4092.199142 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.226 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -43.83426 -39.45598 -39.30964 -37.89976 -36.44654 -35.17460 -34.61632 -32.92707 -31.12863 -30.57719 -28.64534 -28.42762 -27.79685 -27.67696 -26.91360 -24.90405 -23.99508 -23.16255 -21.81267 -20.92948 -20.48129 -19.24937 -18.42323 -17.68024 -17.48621 -17.28841 -16.73990 -16.54047 -16.21932 -16.01086 -15.76171 -15.63774 -15.41955 -15.15576 -14.99681 -14.48984 -14.15607 -13.94753 -13.65737 -13.47191 -13.41604 -13.24259 -13.09197 -12.97433 -12.86903 -12.82559 -12.64345 -12.60884 -12.51991 -12.40049 -12.18388 -12.15971 -12.07338 -11.97747 -11.89851 -11.79720 -11.75129 -11.25445 -11.14954 -10.84157 -10.52154 -10.41907 -10.25816 -9.00080 -8.33410 -6.41971 1.06081 1.30959 1.33073 1.42910 1.49560 2.09544 2.28599 2.97123 3.00015 3.04867 3.31044 3.44458 3.60178 3.69776 3.89006 4.05535 4.11344 4.14073 4.19632 4.22123 4.27859 4.33116 4.45859 4.54551 4.58257 4.66074 4.67527 4.75088 4.79844 4.81893 4.85914 4.86878 4.90653 4.91390 4.93647 4.96177 5.01083 5.02133 5.06873 5.11669 5.20394 5.26677 5.33076 5.33657 5.39602 5.47277 5.82887 5.91992 6.18605 6.41351 6.53309 6.70065 6.93777 7.23009 8.03618 8.83474 Molecular weight = 340.23amu Principal moments of inertia in cm(-1) A = 0.008516 B = 0.005732 C = 0.004514 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3287.301660 B = 4883.831033 C = 6200.979727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.392 6.392 3 C 0.081 3.919 4 C 0.085 3.915 5 N -0.422 5.422 6 C 0.169 3.831 7 C -0.557 4.557 8 H 0.033 0.967 9 C 0.015 3.985 10 N -0.945 5.945 11 Si 0.947 3.053 12 H -0.260 1.260 13 H -0.288 1.288 14 H -0.236 1.236 15 C 0.402 3.598 16 N -0.382 5.382 17 N -0.332 5.332 18 C 0.176 3.824 19 C 0.002 3.998 20 C -0.136 4.136 21 C -0.138 4.138 22 N -0.464 5.464 23 C 0.073 3.927 24 C 0.115 3.885 25 C -0.166 4.166 26 C -0.136 4.136 27 O -0.556 6.556 28 H 0.045 0.955 29 H 0.045 0.955 30 H 0.095 0.905 31 H 0.068 0.932 32 H 0.053 0.947 33 H 0.061 0.939 34 H 0.047 0.953 35 H 0.035 0.965 36 H 0.057 0.943 37 H 0.266 0.734 38 H 0.111 0.889 39 H 0.056 0.944 40 H 0.044 0.956 41 H 0.099 0.901 42 H 0.038 0.962 43 H 0.044 0.956 44 H 0.101 0.899 45 H 0.090 0.910 46 H 0.124 0.876 47 H 0.088 0.912 48 H 0.074 0.926 49 H 0.066 0.934 50 H 0.031 0.969 51 H 0.068 0.932 52 H 0.096 0.904 53 H 0.382 0.618 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.688 -19.986 -5.181 21.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.311 6.311 3 C 0.004 3.996 4 C -0.043 4.043 5 N -0.144 5.144 6 C 0.043 3.957 7 C -0.596 4.596 8 H 0.052 0.948 9 C -0.184 4.184 10 N -0.584 5.584 11 Si 0.769 3.231 12 H -0.184 1.184 13 H -0.214 1.214 14 H -0.159 1.159 15 C 0.044 3.956 16 N -0.226 5.226 17 N -0.170 5.170 18 C -0.093 4.093 19 C -0.019 4.019 20 C -0.194 4.194 21 C -0.196 4.196 22 N -0.157 5.157 23 C -0.050 4.050 24 C 0.074 3.926 25 C -0.223 4.223 26 C -0.193 4.193 27 O -0.363 6.363 28 H 0.064 0.936 29 H 0.064 0.936 30 H 0.114 0.886 31 H 0.086 0.914 32 H 0.071 0.929 33 H 0.080 0.920 34 H 0.066 0.934 35 H 0.053 0.947 36 H 0.075 0.925 37 H 0.075 0.925 38 H 0.128 0.872 39 H 0.075 0.925 40 H 0.064 0.936 41 H 0.117 0.883 42 H 0.057 0.943 43 H 0.063 0.937 44 H 0.120 0.880 45 H 0.108 0.892 46 H 0.142 0.858 47 H 0.107 0.893 48 H 0.093 0.907 49 H 0.085 0.915 50 H 0.050 0.950 51 H 0.087 0.913 52 H 0.115 0.885 53 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges -3.970 -20.026 -3.686 20.746 hybrid contribution -0.741 1.891 -1.518 2.536 sum -4.711 -18.135 -5.203 19.446 Atomic orbital electron populations 1.22876 0.80300 1.03424 1.00392 1.87994 1.20543 1.27122 1.95417 1.22409 0.91187 0.85194 1.00840 1.21800 0.94642 0.97838 0.90057 1.59192 1.11002 1.37933 1.06313 1.20221 0.97352 0.89429 0.88684 1.21865 1.22699 1.03849 1.11151 0.94826 1.25950 0.97202 0.94218 1.01010 1.70124 1.40970 1.09202 1.38112 0.85735 0.79061 0.80269 0.78044 1.18428 1.21408 1.15934 1.22440 0.91506 0.91362 0.90336 1.74491 0.97584 1.23486 1.27015 1.73652 1.16998 1.09591 1.16769 1.25297 0.86404 1.02344 0.95299 1.19786 0.89773 0.93157 0.99139 1.21833 1.02190 0.97771 0.97595 1.21792 0.97179 0.99794 1.00869 1.45993 1.11051 1.33156 1.25512 1.23047 1.00560 0.95624 0.85738 1.21636 0.87003 0.91365 0.92637 1.22366 1.02956 1.00774 0.96240 1.21852 0.99026 0.98780 0.99657 1.86636 1.35462 1.71265 1.42914 0.93631 0.93629 0.88611 0.91375 0.92867 0.92008 0.93434 0.94705 0.92531 0.92523 0.87151 0.92466 0.93633 0.88262 0.94300 0.93706 0.87997 0.89184 0.85805 0.89310 0.90743 0.91454 0.94991 0.91302 0.88498 0.76968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.58 11.01 113.37 1.25 1.83 16 2 O -0.39 -12.42 10.63 -148.98 -1.58 -14.00 16 3 C 0.08 2.72 6.07 71.98 0.44 3.16 16 4 C 0.08 3.59 4.70 86.30 0.41 3.99 16 5 N -0.42 -17.72 4.23 -710.36 -3.01 -20.72 16 6 C 0.17 7.54 3.96 85.56 0.34 7.88 16 7 C -0.56 -31.43 8.07 25.60 0.21 -31.22 16 8 H 0.03 2.26 6.69 -2.91 -0.02 2.24 16 9 C 0.01 0.84 5.47 84.66 0.46 1.30 16 10 N -0.94 -59.26 13.96 21.45 0.30 -58.96 16 11 Si 0.95 41.14 27.38 68.60 1.88 43.02 16 12 H -0.26 -10.69 7.11 99.48 0.71 -9.98 16 13 H -0.29 -12.63 7.11 99.48 0.71 -11.92 16 14 H -0.24 -9.00 6.68 99.48 0.66 -8.33 16 15 C 0.40 18.08 5.43 260.11 1.41 19.49 16 16 N -0.38 -19.71 10.98 -58.00 -0.64 -20.34 16 17 N -0.33 -15.55 12.18 -49.53 -0.60 -16.16 16 18 C 0.18 6.45 5.18 137.64 0.71 7.16 16 19 C 0.00 0.05 2.73 -11.54 -0.03 0.02 16 20 C -0.14 -2.83 9.18 71.98 0.66 -2.17 16 21 C -0.14 -3.39 9.18 71.98 0.66 -2.73 16 22 N -0.46 -16.97 2.24 -514.83 -1.15 -18.12 16 23 C 0.07 1.91 5.10 86.38 0.44 2.35 16 24 C 0.12 2.54 1.18 -10.80 -0.01 2.53 16 25 C -0.17 -2.34 8.81 71.98 0.63 -1.71 16 26 C -0.14 -2.91 7.18 71.98 0.52 -2.39 16 27 O -0.56 -15.91 12.18 -148.98 -1.81 -17.72 16 28 H 0.05 0.90 8.14 -2.38 -0.02 0.88 16 29 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 30 H 0.10 1.79 8.14 -2.39 -0.02 1.77 16 31 H 0.07 2.02 8.14 -2.38 -0.02 2.00 16 32 H 0.05 1.79 6.59 -2.39 -0.02 1.77 16 33 H 0.06 2.75 7.78 -2.38 -0.02 2.73 16 34 H 0.05 2.36 6.50 -2.39 -0.02 2.34 16 35 H 0.04 1.49 5.46 -2.39 -0.01 1.48 16 36 H 0.06 2.36 5.70 -2.39 -0.01 2.35 16 37 H 0.27 15.54 8.31 -92.71 -0.77 14.77 16 38 H 0.11 1.95 6.18 -2.39 -0.01 1.93 16 39 H 0.06 1.20 6.27 -2.39 -0.01 1.18 16 40 H 0.04 1.16 8.14 -2.39 -0.02 1.15 16 41 H 0.10 1.33 8.14 -2.39 -0.02 1.31 16 42 H 0.04 1.07 8.14 -2.38 -0.02 1.05 16 43 H 0.04 1.31 8.14 -2.39 -0.02 1.29 16 44 H 0.10 1.65 8.14 -2.39 -0.02 1.64 16 45 H 0.09 2.52 6.05 -2.39 -0.01 2.50 16 46 H 0.12 2.40 7.00 -2.39 -0.02 2.38 16 47 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 48 H 0.07 1.03 8.14 -2.38 -0.02 1.01 16 49 H 0.07 0.90 8.14 -2.38 -0.02 0.88 16 50 H 0.03 0.92 5.59 -2.38 -0.01 0.91 16 51 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 52 H 0.10 1.43 7.41 -2.39 -0.02 1.41 16 53 H 0.38 10.03 9.05 -74.05 -0.67 9.36 16 Total: -1.00 -81.97 408.34 1.67 -80.30 By element: Atomic # 1 Polarization: 33.01 SS G_CDS: 0.20 Total: 33.21 kcal Atomic # 6 Polarization: 1.41 SS G_CDS: 8.09 Total: 9.50 kcal Atomic # 7 Polarization: -129.20 SS G_CDS: -5.10 Total: -134.31 kcal Atomic # 8 Polarization: -28.32 SS G_CDS: -3.40 Total: -31.72 kcal Atomic # 14 Polarization: 41.14 SS G_CDS: 1.88 Total: 43.02 kcal Total: -81.97 1.67 -80.30 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001411862755.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.024 kcal (2) G-P(sol) polarization free energy of solvation -81.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.671 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.299 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds