Wall clock time and date at job start Sat Apr 11 2020 06:12:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.42897 * 109.47072 * 2 1 4 4 C 1.42898 * 114.00422 * 179.97438 * 3 2 1 5 5 C 1.50700 * 109.47495 * 179.97438 * 4 3 2 6 6 N 1.30286 * 126.34529 * 90.02466 * 5 4 3 7 7 N 1.28534 * 110.05261 * 179.97438 * 6 5 4 8 8 C 1.31213 * 109.85747 * 0.02562 * 7 6 5 9 9 N 1.38586 * 126.47275 * 179.97438 * 8 7 6 10 10 C 1.46903 * 111.00254 * 301.58594 * 9 8 7 11 11 C 1.46905 * 111.00017 * 65.53830 * 9 8 7 12 12 H 1.09007 * 109.46716 * 54.99747 * 11 9 8 13 13 C 1.52998 * 109.46966 * 295.00167 * 11 9 8 14 14 C 1.50696 * 109.47070 * 174.99929 * 11 9 8 15 15 H 1.07993 * 120.00537 * 0.02562 * 14 11 9 16 16 C 1.37882 * 119.99524 * 179.97438 * 14 11 9 17 17 N 1.31511 * 120.00560 * 0.02562 * 16 14 11 18 18 Si 1.86803 * 119.99855 * 180.02562 * 16 14 11 19 19 H 1.48497 * 109.47291 * 59.99871 * 18 16 14 20 20 H 1.48500 * 109.47304 * 180.02562 * 18 16 14 21 21 H 1.48509 * 109.46742 * 300.00168 * 18 16 14 22 22 N 1.36452 * 107.05825 * 359.73512 * 8 7 6 23 23 C 1.46495 * 127.14371 * 180.26459 * 22 8 7 24 24 C 1.52997 * 109.47177 * 84.67376 * 23 22 8 25 25 C 1.53002 * 109.46903 * 56.47529 * 24 23 22 26 26 O 1.42896 * 109.47420 * 296.47484 * 24 23 22 27 27 C 1.52997 * 109.47402 * 176.47305 * 24 23 22 28 28 C 1.52995 * 109.47709 * 185.00323 * 27 24 23 29 29 H 1.08999 * 109.47031 * 60.00731 * 1 2 3 30 30 H 1.09003 * 109.46819 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.47636 * 300.00178 * 1 2 3 32 32 H 1.08995 * 109.47289 * 239.99406 * 2 1 3 33 33 H 1.09003 * 109.46608 * 119.99546 * 2 1 3 34 34 H 1.08996 * 109.46743 * 300.00145 * 4 3 2 35 35 H 1.09003 * 109.46633 * 59.99595 * 4 3 2 36 36 H 1.09003 * 109.47118 * 57.06089 * 10 9 8 37 37 H 1.08998 * 109.46989 * 177.06392 * 10 9 8 38 38 H 1.09001 * 109.46910 * 297.06895 * 10 9 8 39 39 H 1.08999 * 109.47417 * 299.99887 * 13 11 9 40 40 H 1.09002 * 109.47272 * 59.99864 * 13 11 9 41 41 H 1.09003 * 109.46991 * 179.97438 * 13 11 9 42 42 H 0.96994 * 120.00497 * 180.02562 * 17 16 14 43 43 H 1.09000 * 109.47852 * 204.68076 * 23 22 8 44 44 H 1.09009 * 109.46762 * 324.67633 * 23 22 8 45 45 H 1.08995 * 109.47104 * 65.96817 * 25 24 23 46 46 H 1.09004 * 109.46768 * 185.96850 * 25 24 23 47 47 H 1.08999 * 109.47128 * 305.96844 * 25 24 23 48 48 H 0.96697 * 113.99906 * 299.99745 * 26 24 23 49 49 H 1.09008 * 109.47240 * 305.00380 * 27 24 23 50 50 H 1.09003 * 109.47197 * 65.00182 * 27 24 23 51 51 H 1.09008 * 109.46815 * 300.00317 * 28 27 24 52 52 H 1.08998 * 109.47231 * 59.99335 * 28 27 24 53 53 H 1.08997 * 109.47596 * 179.97438 * 28 27 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4602 0.0006 5 6 3.8194 2.9162 -0.0001 6 7 4.0184 3.6628 1.0489 7 7 4.3371 4.8545 0.6878 8 6 4.3580 4.9327 -0.6218 9 7 4.6580 6.0565 -1.3753 10 6 3.7439 7.1621 -1.0587 11 6 6.0577 6.4598 -1.1849 12 1 6.7121 5.6172 -1.4082 13 6 6.2689 6.8992 0.2654 14 6 6.3805 7.6055 -2.1090 15 1 5.6218 7.9954 -2.7713 16 6 7.6443 8.1567 -2.1083 17 7 8.5682 7.6823 -1.3015 18 14 8.0444 9.5774 -3.2533 19 1 7.1524 10.7249 -2.9489 20 1 9.4593 9.9850 -3.0609 21 1 7.8396 9.1512 -4.6611 22 7 4.0339 3.6972 -1.1019 23 6 3.9336 3.2922 -2.5061 24 6 5.3202 2.9084 -3.0265 25 6 5.9088 1.8057 -2.1442 26 8 6.1753 4.0528 -2.9926 27 6 5.2028 2.4020 -4.4655 28 6 6.5675 1.9018 -4.9432 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8899 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 3.8332 0.9768 0.8908 35 1 3.8340 0.9765 -0.8892 36 1 3.7942 7.3810 0.0079 37 1 4.0338 8.0469 -1.6254 38 1 2.7253 6.8785 -1.3236 39 1 5.6145 7.7417 0.4888 40 1 6.0354 6.0705 0.9338 41 1 7.3076 7.1981 0.4068 42 1 9.4572 8.0703 -1.3007 43 1 3.2640 2.4362 -2.5906 44 1 3.5406 4.1204 -3.0959 45 1 5.3151 0.8980 -2.2527 46 1 6.9363 1.6064 -2.4488 47 1 5.8943 2.1270 -1.1028 48 1 5.8633 4.7930 -3.5310 49 1 4.4821 1.5852 -4.5056 50 1 4.8675 3.2143 -5.1103 51 1 7.2882 2.7187 -4.9031 52 1 6.9028 1.0896 -4.2983 53 1 6.4837 1.5406 -5.9682 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001434692821.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:12:29 Heat of formation + Delta-G solvation = -22.505702 kcal Electronic energy + Delta-G solvation = -32995.540026 eV Core-core repulsion = 28903.894598 eV Total energy + Delta-G solvation = -4091.645428 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.226 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -44.00315 -39.66662 -39.20598 -38.71453 -35.53714 -34.77103 -34.02185 -32.89849 -31.30368 -30.53943 -30.35494 -28.56949 -27.53947 -27.04497 -26.66751 -24.80521 -23.66024 -23.16143 -21.88022 -21.26509 -20.83449 -18.38788 -18.18477 -18.01682 -17.40808 -17.16042 -16.96787 -16.57059 -16.47594 -16.26717 -15.94007 -15.80548 -15.25611 -14.84104 -14.60682 -14.33856 -14.22060 -13.70720 -13.43542 -13.34019 -13.27021 -13.19510 -13.10977 -13.02558 -12.91128 -12.83096 -12.65853 -12.61524 -12.56872 -12.33643 -12.29902 -12.12926 -12.06261 -12.00924 -11.91524 -11.70160 -11.49652 -11.20409 -10.83710 -10.63935 -10.42935 -10.38095 -10.00404 -9.41871 -8.04412 -6.16508 0.70821 1.32121 1.48768 1.49885 1.56877 1.77591 2.46975 2.74947 3.11001 3.26741 3.33718 3.50644 3.56185 3.66599 3.87597 3.94318 4.11094 4.15390 4.22947 4.28765 4.37080 4.38037 4.49370 4.54990 4.55751 4.65391 4.68675 4.73907 4.78731 4.80387 4.87612 4.90891 5.01271 5.03773 5.06336 5.06757 5.08651 5.14769 5.20163 5.23636 5.30202 5.38395 5.49019 5.52173 5.68437 5.72537 5.94966 6.13233 6.14982 6.30986 6.72813 6.93339 6.95540 7.51574 7.77868 9.02046 Molecular weight = 340.23amu Principal moments of inertia in cm(-1) A = 0.013184 B = 0.003969 C = 0.003356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2123.279322 B = 7052.298189 C = 8341.103816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.049 3.951 3 O -0.408 6.408 4 C 0.161 3.839 5 C 0.170 3.830 6 N -0.319 5.319 7 N -0.356 5.356 8 C 0.376 3.624 9 N -0.453 5.453 10 C 0.046 3.954 11 C 0.243 3.757 12 H 0.028 0.972 13 C -0.162 4.162 14 C -0.508 4.508 15 H 0.071 0.929 16 C 0.015 3.985 17 N -0.921 5.921 18 Si 0.962 3.038 19 H -0.272 1.272 20 H -0.294 1.294 21 H -0.266 1.266 22 N -0.444 5.444 23 C 0.082 3.918 24 C 0.112 3.888 25 C -0.141 4.141 26 O -0.559 6.559 27 C -0.134 4.134 28 C -0.147 4.147 29 H 0.058 0.942 30 H 0.096 0.904 31 H 0.049 0.951 32 H 0.075 0.925 33 H 0.061 0.939 34 H 0.092 0.908 35 H 0.100 0.900 36 H 0.019 0.981 37 H 0.089 0.911 38 H 0.066 0.934 39 H 0.025 0.975 40 H 0.028 0.972 41 H 0.056 0.944 42 H 0.258 0.742 43 H 0.129 0.871 44 H 0.104 0.896 45 H 0.105 0.895 46 H 0.064 0.936 47 H 0.027 0.973 48 H 0.383 0.617 49 H 0.100 0.900 50 H 0.073 0.927 51 H 0.036 0.964 52 H 0.059 0.941 53 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.117 -18.834 -7.869 24.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.026 4.026 3 O -0.327 6.327 4 C 0.083 3.917 5 C -0.098 4.098 6 N -0.161 5.161 7 N -0.200 5.200 8 C 0.019 3.981 9 N -0.179 5.179 10 C -0.101 4.101 11 C 0.137 3.863 12 H 0.046 0.954 13 C -0.222 4.222 14 C -0.547 4.547 15 H 0.090 0.910 16 C -0.184 4.184 17 N -0.561 5.561 18 Si 0.787 3.213 19 H -0.197 1.197 20 H -0.221 1.221 21 H -0.191 1.191 22 N -0.136 5.136 23 C -0.040 4.040 24 C 0.071 3.929 25 C -0.198 4.198 26 O -0.367 6.367 27 C -0.172 4.172 28 C -0.204 4.204 29 H 0.077 0.923 30 H 0.115 0.885 31 H 0.068 0.932 32 H 0.093 0.907 33 H 0.080 0.920 34 H 0.110 0.890 35 H 0.118 0.882 36 H 0.038 0.962 37 H 0.107 0.893 38 H 0.085 0.915 39 H 0.044 0.956 40 H 0.047 0.953 41 H 0.075 0.925 42 H 0.067 0.933 43 H 0.147 0.853 44 H 0.122 0.878 45 H 0.123 0.877 46 H 0.083 0.917 47 H 0.047 0.953 48 H 0.232 0.768 49 H 0.118 0.882 50 H 0.092 0.908 51 H 0.055 0.945 52 H 0.078 0.922 53 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -12.692 -18.768 -6.515 23.575 hybrid contribution 0.638 1.315 -0.788 1.661 sum -12.054 -17.454 -7.304 22.434 Atomic orbital electron populations 1.21778 0.93113 1.03521 1.02387 1.22786 0.96140 0.81708 1.02000 1.87954 1.19530 1.29447 1.95769 1.20638 0.82754 0.84094 1.04260 1.24743 1.05299 0.97304 0.82474 1.73829 1.17433 0.98586 1.26284 1.74650 1.21681 1.13060 1.10566 1.22803 0.99337 0.87961 0.88027 1.59337 1.07024 1.01626 1.49895 1.22259 0.94642 0.93777 0.99448 1.19041 0.80432 0.95252 0.91592 0.95393 1.22352 1.01591 0.98609 0.99631 1.21215 0.96746 1.15791 1.20907 0.91046 1.25665 0.96177 0.99437 0.97078 1.70070 1.03872 1.43089 1.39035 0.85562 0.76532 0.79554 0.79602 1.19739 1.22060 1.19062 1.46245 1.50122 1.08180 1.09007 1.22957 1.00263 1.03796 0.77021 1.21724 0.87688 0.87336 0.96178 1.21910 1.02622 0.97428 0.97883 1.86722 1.50710 1.25626 1.73607 1.22067 0.99351 1.02482 0.93271 1.21706 0.96517 1.00826 1.01380 0.92310 0.88545 0.93170 0.90709 0.92030 0.89004 0.88229 0.96192 0.89258 0.91512 0.95639 0.95337 0.92510 0.93274 0.85273 0.87790 0.87689 0.91729 0.95347 0.76825 0.88196 0.90804 0.94455 0.92190 0.91304 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.84 10.28 71.98 0.74 -1.10 16 2 C 0.05 0.66 6.66 71.98 0.48 1.14 16 3 O -0.41 -9.17 10.33 -148.98 -1.54 -10.71 16 4 C 0.16 3.58 5.83 71.24 0.42 4.00 16 5 C 0.17 5.73 6.21 137.64 0.86 6.59 16 6 N -0.32 -13.74 12.18 -49.54 -0.60 -14.35 16 7 N -0.36 -16.83 9.62 -58.00 -0.56 -17.39 16 8 C 0.38 15.90 5.85 260.11 1.52 17.42 16 9 N -0.45 -19.32 4.44 -710.97 -3.16 -22.48 16 10 C 0.05 1.85 8.70 127.69 1.11 2.96 16 11 C 0.24 12.32 1.90 44.17 0.08 12.40 16 12 H 0.03 1.63 6.45 -2.38 -0.02 1.61 16 13 C -0.16 -8.85 8.19 71.98 0.59 -8.26 16 14 C -0.51 -26.40 7.84 25.60 0.20 -26.20 16 15 H 0.07 3.52 6.79 -2.91 -0.02 3.50 16 16 C 0.02 0.82 5.30 84.66 0.45 1.27 16 17 N -0.92 -53.74 11.32 21.45 0.24 -53.49 16 18 Si 0.96 42.61 29.54 68.60 2.03 44.64 16 19 H -0.27 -11.72 7.11 99.48 0.71 -11.02 16 20 H -0.29 -13.23 7.11 99.48 0.71 -12.53 16 21 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 22 N -0.44 -14.80 2.27 -514.86 -1.17 -15.97 16 23 C 0.08 1.92 5.12 86.38 0.44 2.36 16 24 C 0.11 2.66 0.86 -10.80 -0.01 2.65 16 25 C -0.14 -3.26 6.94 71.98 0.50 -2.76 16 26 O -0.56 -19.44 9.68 -148.98 -1.44 -20.89 16 27 C -0.13 -2.18 5.20 30.59 0.16 -2.02 16 28 C -0.15 -2.68 9.33 71.98 0.67 -2.01 16 29 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 30 H 0.10 0.69 8.14 -2.39 -0.02 0.67 16 31 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 32 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 33 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 34 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 35 H 0.10 1.51 5.69 -2.39 -0.01 1.50 16 36 H 0.02 0.86 6.54 -2.39 -0.02 0.84 16 37 H 0.09 3.54 6.34 -2.39 -0.02 3.53 16 38 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 39 H 0.02 1.33 6.54 -2.39 -0.02 1.31 16 40 H 0.03 1.56 5.76 -2.39 -0.01 1.55 16 41 H 0.06 3.39 6.07 -2.39 -0.01 3.37 16 42 H 0.26 14.52 8.31 -92.71 -0.77 13.75 16 43 H 0.13 2.08 7.60 -2.39 -0.02 2.06 16 44 H 0.10 2.43 8.14 -2.38 -0.02 2.41 16 45 H 0.10 1.47 7.11 -2.39 -0.02 1.46 16 46 H 0.06 1.60 6.71 -2.38 -0.02 1.58 16 47 H 0.03 0.84 6.06 -2.39 -0.01 0.82 16 48 H 0.38 13.13 9.01 -74.06 -0.67 12.46 16 49 H 0.10 1.02 8.14 -2.38 -0.02 1.00 16 50 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 51 H 0.04 0.90 7.82 -2.38 -0.02 0.88 16 52 H 0.06 1.03 6.48 -2.39 -0.02 1.02 16 53 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 Total: -1.00 -74.08 403.77 2.25 -71.83 By element: Atomic # 1 Polarization: 30.12 SS G_CDS: 0.25 Total: 30.37 kcal Atomic # 6 Polarization: 0.24 SS G_CDS: 8.21 Total: 8.44 kcal Atomic # 7 Polarization: -118.44 SS G_CDS: -5.25 Total: -123.68 kcal Atomic # 8 Polarization: -28.61 SS G_CDS: -2.98 Total: -31.60 kcal Atomic # 14 Polarization: 42.61 SS G_CDS: 2.03 Total: 44.64 kcal Total: -74.08 2.25 -71.83 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001434692821.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.324 kcal (2) G-P(sol) polarization free energy of solvation -74.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.829 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds