Wall clock time and date at job start Sat Apr 11 2020 06:12:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42902 * 109.47297 * 2 1 4 4 C 1.42893 * 113.99844 * 180.02562 * 3 2 1 5 5 C 1.50704 * 109.47277 * 179.97438 * 4 3 2 6 6 N 1.30293 * 126.34342 * 275.83799 * 5 4 3 7 7 N 1.28534 * 110.05081 * 180.30892 * 6 5 4 8 8 C 1.31218 * 109.85880 * 359.72050 * 7 6 5 9 9 N 1.38576 * 126.47236 * 179.97438 * 8 7 6 10 10 C 1.46909 * 110.99595 * 256.60405 * 9 8 7 11 11 C 1.46898 * 111.00404 * 20.55533 * 9 8 7 12 12 H 1.08997 * 109.47553 * 300.00662 * 11 9 8 13 13 C 1.53002 * 109.46888 * 60.00440 * 11 9 8 14 14 C 1.50705 * 109.47359 * 179.97438 * 11 9 8 15 15 H 1.07996 * 119.99674 * 0.02562 * 14 11 9 16 16 C 1.37878 * 119.99958 * 180.02562 * 14 11 9 17 17 N 1.31513 * 119.99979 * 0.02562 * 16 14 11 18 18 Si 1.86793 * 120.00029 * 180.02562 * 16 14 11 19 19 H 1.48505 * 109.47296 * 0.02562 * 18 16 14 20 20 H 1.48499 * 109.47115 * 119.99950 * 18 16 14 21 21 H 1.48499 * 109.47378 * 239.99961 * 18 16 14 22 22 N 1.36456 * 107.05504 * 359.97438 * 8 7 6 23 23 C 1.46500 * 127.13836 * 180.02562 * 22 8 7 24 24 C 1.52991 * 109.47617 * 87.66379 * 23 22 8 25 25 C 1.53001 * 109.47203 * 298.85092 * 24 23 22 26 26 O 1.42897 * 109.47368 * 58.84581 * 24 23 22 27 27 C 1.52995 * 109.47316 * 178.84838 * 24 23 22 28 28 C 1.53001 * 109.47199 * 298.10104 * 27 24 23 29 29 H 1.09002 * 109.47543 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47002 * 300.00515 * 1 2 3 31 31 H 1.09000 * 109.46758 * 59.99907 * 1 2 3 32 32 H 1.09003 * 109.47002 * 239.99485 * 2 1 3 33 33 H 1.09000 * 109.46758 * 120.00093 * 2 1 3 34 34 H 1.09001 * 109.47744 * 59.99443 * 4 3 2 35 35 H 1.09006 * 109.47132 * 299.99658 * 4 3 2 36 36 H 1.08999 * 109.47013 * 66.42076 * 10 9 8 37 37 H 1.09008 * 109.46538 * 186.41325 * 10 9 8 38 38 H 1.08995 * 109.47273 * 306.41619 * 10 9 8 39 39 H 1.08997 * 109.47515 * 180.02562 * 13 11 9 40 40 H 1.09001 * 109.47141 * 300.00098 * 13 11 9 41 41 H 1.09007 * 109.47264 * 59.99546 * 13 11 9 42 42 H 0.97000 * 120.00076 * 179.97438 * 17 16 14 43 43 H 1.09007 * 109.46810 * 327.66187 * 23 22 8 44 44 H 1.09000 * 109.46994 * 207.66718 * 23 22 8 45 45 H 1.09006 * 109.47290 * 299.99807 * 25 24 23 46 46 H 1.09003 * 109.47372 * 59.99559 * 25 24 23 47 47 H 1.09003 * 109.47654 * 179.97438 * 25 24 23 48 48 H 0.96698 * 114.00399 * 300.00659 * 26 24 23 49 49 H 1.09002 * 109.47014 * 178.09849 * 27 24 23 50 50 H 1.08997 * 109.47112 * 58.10558 * 27 24 23 51 51 H 1.08998 * 109.46638 * 177.24850 * 28 27 24 52 52 H 1.08999 * 109.46901 * 57.25150 * 28 27 24 53 53 H 1.08997 * 109.46949 * 297.24757 * 28 27 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4309 1.4600 -0.0006 5 6 3.8196 2.9161 -0.0012 6 7 3.9152 3.6893 -1.0455 7 7 4.2752 4.8703 -0.6879 8 6 4.4241 4.9155 0.6150 9 7 4.8042 6.0185 1.3629 10 6 6.2094 5.9138 1.7784 11 6 4.5658 7.2644 0.6221 12 1 5.1427 7.2535 -0.3026 13 6 3.0766 7.3849 0.2926 14 6 4.9898 8.4393 1.4654 15 1 5.3960 8.2766 2.4527 16 6 4.8589 9.7218 0.9765 17 7 4.3637 9.9199 -0.2257 18 14 5.3850 11.1780 2.0214 19 1 5.9061 10.6902 3.3237 20 1 6.4495 11.9352 1.3152 21 1 4.2183 12.0662 2.2560 22 7 4.1338 3.6714 1.0945 23 6 4.1600 3.2339 2.4924 24 6 2.8024 3.5138 3.1399 25 6 2.5216 5.0174 3.1062 26 8 1.7797 2.8221 2.4204 27 6 2.8204 3.0308 4.5915 28 6 3.0541 1.5190 4.6231 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 3.8334 0.9765 -0.8907 35 1 3.8340 0.9764 0.8892 36 1 6.8530 5.9686 0.9004 37 1 6.4496 6.7326 2.4567 38 1 6.3681 4.9626 2.2865 39 1 2.8997 8.3091 -0.2574 40 1 2.7695 6.5352 -0.3171 41 1 2.4996 7.3958 1.2174 42 1 4.2712 10.8222 -0.5695 43 1 4.9375 3.7779 3.0288 44 1 4.3693 2.1650 2.5347 45 1 3.3016 5.5452 3.6551 46 1 2.5087 5.3616 2.0721 47 1 1.5541 5.2169 3.5672 48 1 1.7107 3.0787 1.4907 49 1 1.8648 3.2606 5.0628 50 1 3.6223 3.5338 5.1319 51 1 3.1157 1.1825 5.6580 52 1 3.9861 1.2847 4.1088 53 1 2.2271 1.0131 4.1251 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001434692830.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:12:36 Heat of formation + Delta-G solvation = -2.866319 kcal Electronic energy + Delta-G solvation = -33218.984153 eV Core-core repulsion = 29128.190352 eV Total energy + Delta-G solvation = -4090.793800 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.226 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.70769 -38.66875 -38.11609 -37.09973 -34.24105 -33.21958 -32.93296 -31.90399 -30.05017 -29.71291 -29.21822 -27.29571 -26.42011 -25.17352 -24.34339 -23.66374 -22.93169 -21.90120 -20.93484 -19.95231 -19.49314 -17.45691 -17.07321 -16.56827 -16.32211 -16.09119 -15.73510 -15.25083 -15.03798 -14.63412 -14.36213 -14.21206 -13.89442 -13.74581 -13.64294 -13.42140 -13.20456 -12.82520 -12.63492 -12.44831 -12.39525 -11.98144 -11.85401 -11.60578 -11.54730 -11.50436 -11.37488 -11.25940 -11.07955 -11.02505 -10.92946 -10.77045 -10.70653 -10.38839 -10.29220 -10.22437 -10.08482 -9.92317 -9.74903 -9.43335 -9.27542 -8.68849 -8.49022 -7.53964 -6.06783 -4.14421 1.95724 2.52825 3.16692 3.25935 3.34026 3.36156 3.75842 4.17929 4.28378 4.51784 4.52836 4.55810 4.68541 4.77357 4.87421 4.92932 5.00864 5.08411 5.15600 5.21042 5.21844 5.25351 5.30288 5.52718 5.53496 5.62306 5.63559 5.77460 5.80498 5.82757 5.93923 6.00488 6.04673 6.10493 6.12747 6.13609 6.24717 6.32175 6.44168 6.65125 6.78923 6.93853 6.99846 7.08978 7.17879 7.40108 7.64243 7.71305 7.74429 7.92910 8.22186 8.40816 8.87619 9.23986 9.50485 10.99577 Molecular weight = 340.23amu Principal moments of inertia in cm(-1) A = 0.014976 B = 0.003715 C = 0.003347 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1869.193763 B = 7535.450470 C = 8364.389063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.064 3.936 3 O -0.376 6.376 4 C 0.165 3.835 5 C 0.139 3.861 6 N -0.261 5.261 7 N -0.313 5.313 8 C 0.392 3.608 9 N -0.458 5.458 10 C 0.042 3.958 11 C 0.229 3.771 12 H 0.025 0.975 13 C -0.134 4.134 14 C -0.515 4.515 15 H 0.065 0.935 16 C 0.064 3.936 17 N -0.883 5.883 18 Si 0.899 3.101 19 H -0.273 1.273 20 H -0.284 1.284 21 H -0.284 1.284 22 N -0.476 5.476 23 C 0.085 3.915 24 C 0.119 3.881 25 C -0.175 4.175 26 O -0.550 6.550 27 C -0.105 4.105 28 C -0.150 4.150 29 H 0.068 0.932 30 H 0.066 0.934 31 H 0.063 0.937 32 H 0.048 0.952 33 H 0.048 0.952 34 H 0.080 0.920 35 H 0.062 0.938 36 H 0.033 0.967 37 H 0.095 0.905 38 H 0.042 0.958 39 H 0.089 0.911 40 H 0.020 0.980 41 H 0.027 0.973 42 H 0.262 0.738 43 H 0.102 0.898 44 H 0.094 0.906 45 H 0.075 0.925 46 H 0.073 0.927 47 H 0.056 0.944 48 H 0.380 0.620 49 H 0.075 0.925 50 H 0.076 0.924 51 H 0.052 0.948 52 H 0.049 0.951 53 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.227 -20.061 7.800 21.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.012 4.012 3 O -0.294 6.294 4 C 0.086 3.914 5 C -0.128 4.128 6 N -0.103 5.103 7 N -0.158 5.158 8 C 0.037 3.963 9 N -0.183 5.183 10 C -0.105 4.105 11 C 0.125 3.875 12 H 0.043 0.957 13 C -0.192 4.192 14 C -0.554 4.554 15 H 0.083 0.917 16 C -0.139 4.139 17 N -0.521 5.521 18 Si 0.727 3.273 19 H -0.198 1.198 20 H -0.211 1.211 21 H -0.210 1.210 22 N -0.173 5.173 23 C -0.039 4.039 24 C 0.077 3.923 25 C -0.233 4.233 26 O -0.358 6.358 27 C -0.143 4.143 28 C -0.207 4.207 29 H 0.087 0.913 30 H 0.085 0.915 31 H 0.082 0.918 32 H 0.066 0.934 33 H 0.066 0.934 34 H 0.098 0.902 35 H 0.080 0.920 36 H 0.052 0.948 37 H 0.113 0.887 38 H 0.061 0.939 39 H 0.108 0.892 40 H 0.039 0.961 41 H 0.046 0.954 42 H 0.072 0.928 43 H 0.120 0.880 44 H 0.112 0.888 45 H 0.094 0.906 46 H 0.092 0.908 47 H 0.075 0.925 48 H 0.230 0.770 49 H 0.093 0.907 50 H 0.095 0.905 51 H 0.071 0.929 52 H 0.068 0.932 53 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -2.801 -19.551 7.242 21.037 hybrid contribution 0.992 0.592 0.747 1.375 sum -1.809 -18.959 7.989 20.653 Atomic orbital electron populations 1.21727 0.93608 1.01984 1.03491 1.22413 0.95734 0.83252 0.99848 1.87935 1.19398 1.26812 1.95278 1.20239 0.82717 0.86821 1.01611 1.23990 1.08924 0.96370 0.83473 1.73989 1.14618 0.97563 1.24169 1.74899 1.21246 1.11899 1.07724 1.23131 0.99434 0.84865 0.88856 1.59310 1.20001 0.99959 1.39063 1.22300 0.86318 1.01255 1.00651 1.19361 0.94709 0.81169 0.92222 0.95748 1.21847 0.96570 1.01725 0.99065 1.21068 1.42605 0.89833 1.01865 0.91694 1.24896 0.95079 0.98821 0.95063 1.69927 1.44366 1.21541 1.16219 0.86436 0.78251 0.82411 0.80241 1.19763 1.21052 1.20978 1.46233 1.52882 1.10086 1.08052 1.22717 1.00809 1.01428 0.78911 1.21536 0.85654 0.92943 0.92118 1.22518 1.02265 0.93838 1.04665 1.86449 1.55478 1.66560 1.27316 1.21460 1.03105 0.96591 0.93114 1.21760 1.01813 0.95885 1.01246 0.91321 0.91533 0.91793 0.93387 0.93403 0.90230 0.92021 0.94835 0.88690 0.93901 0.89242 0.96103 0.95351 0.92777 0.87991 0.88778 0.90566 0.90830 0.92453 0.77012 0.90663 0.90535 0.92884 0.93169 0.91702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.27 10.28 37.16 0.38 -0.89 16 2 C 0.06 0.57 6.66 37.16 0.25 0.82 16 3 O -0.38 -4.64 8.47 -43.15 -0.37 -5.01 16 4 C 0.17 1.96 6.28 36.01 0.23 2.19 16 5 C 0.14 2.26 6.67 -154.02 -1.03 1.23 16 6 N -0.26 -5.31 12.18 32.99 0.40 -4.90 16 7 N -0.31 -7.05 10.01 30.31 0.30 -6.75 16 8 C 0.39 7.78 4.43 -318.88 -1.41 6.37 16 9 N -0.46 -9.34 3.55 -176.07 -0.62 -9.97 16 10 C 0.04 0.75 9.07 60.07 0.54 1.30 16 11 C 0.23 5.70 1.73 -68.86 -0.12 5.58 16 12 H 0.02 0.70 7.91 -51.93 -0.41 0.29 16 13 C -0.13 -3.40 8.33 37.16 0.31 -3.09 16 14 C -0.52 -13.35 7.95 -34.44 -0.27 -13.63 16 15 H 0.06 1.62 6.40 -52.49 -0.34 1.29 16 16 C 0.06 1.71 5.30 -17.82 -0.09 1.62 16 17 N -0.88 -24.89 11.32 55.43 0.63 -24.27 16 18 Si 0.90 20.60 29.54 -169.99 -5.02 15.58 16 19 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 20 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 21 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 22 N -0.48 -7.57 2.25 -114.09 -0.26 -7.83 16 23 C 0.09 1.05 4.94 -4.05 -0.02 1.03 16 24 C 0.12 1.50 0.89 -90.63 -0.08 1.42 16 25 C -0.18 -2.69 7.84 37.16 0.29 -2.40 16 26 O -0.55 -7.64 11.89 -43.15 -0.51 -8.16 16 27 C -0.10 -1.05 5.19 -26.73 -0.14 -1.19 16 28 C -0.15 -1.29 9.47 37.16 0.35 -0.94 16 29 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 34 H 0.08 0.85 8.14 -51.93 -0.42 0.42 16 35 H 0.06 0.59 7.07 -51.93 -0.37 0.22 16 36 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.09 1.71 6.33 -51.92 -0.33 1.38 16 38 H 0.04 0.62 6.62 -51.93 -0.34 0.28 16 39 H 0.09 2.49 6.07 -51.93 -0.32 2.17 16 40 H 0.02 0.51 6.23 -51.93 -0.32 0.19 16 41 H 0.03 0.69 7.54 -51.92 -0.39 0.30 16 42 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 43 H 0.10 1.21 6.59 -51.93 -0.34 0.87 16 44 H 0.09 0.96 5.30 -51.93 -0.27 0.68 16 45 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 46 H 0.07 1.38 4.90 -51.93 -0.25 1.13 16 47 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 48 H 0.38 5.96 5.96 45.56 0.27 6.23 16 49 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 50 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 51 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 52 H 0.05 0.39 6.31 -51.93 -0.33 0.07 16 53 H 0.06 0.63 7.72 -51.93 -0.40 0.23 16 LS Contribution 402.53 15.07 6.07 6.07 Total: -1.00 -30.50 402.53 -8.55 -39.05 By element: Atomic # 1 Polarization: 15.11 SS G_CDS: -8.35 Total: 6.76 kcal Atomic # 6 Polarization: 0.24 SS G_CDS: -0.81 Total: -0.57 kcal Atomic # 7 Polarization: -54.17 SS G_CDS: 0.45 Total: -53.72 kcal Atomic # 8 Polarization: -12.29 SS G_CDS: -0.88 Total: -13.17 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.02 Total: 15.58 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -30.50 -8.55 -39.05 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001434692830.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.182 kcal (2) G-P(sol) polarization free energy of solvation -30.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.682 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.549 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.048 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds