Wall clock time and date at job start Sat Apr 11 2020 06:12:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52994 * 109.47202 * 2 1 4 4 N 1.46499 * 109.47269 * 179.97438 * 3 2 1 5 5 C 1.34776 * 120.00500 * 270.00181 * 4 3 2 6 6 O 1.21280 * 120.00253 * 179.97438 * 5 4 3 7 7 C 1.50698 * 119.99491 * 359.97438 * 5 4 3 8 8 C 1.53000 * 109.46932 * 180.02562 * 7 5 4 9 9 N 1.46505 * 109.47159 * 180.02562 * 8 7 5 10 10 C 1.34774 * 119.99976 * 179.97438 * 9 8 7 11 11 O 1.21585 * 120.00333 * 359.97438 * 10 9 8 12 12 N 1.34786 * 119.99975 * 179.97438 * 10 9 8 13 13 C 1.46496 * 119.99941 * 180.02562 * 12 10 9 14 14 C 1.46509 * 119.99978 * 89.99520 * 4 3 2 15 15 C 1.53350 * 109.41915 * 240.12979 * 14 4 3 16 16 C 1.53198 * 109.14641 * 178.67654 * 15 14 4 17 17 N 1.46925 * 108.89335 * 54.57862 * 16 15 14 18 18 C 1.36931 * 120.63201 * 126.29969 * 17 16 15 19 19 H 1.08005 * 119.99889 * 331.83485 * 18 17 16 20 20 C 1.38813 * 120.00220 * 151.82683 * 18 17 16 21 21 N 1.31618 * 120.00004 * 343.08678 * 20 18 17 22 22 Si 1.86806 * 119.99953 * 163.08567 * 20 18 17 23 23 H 1.48496 * 109.47191 * 90.00149 * 22 20 18 24 24 H 1.48501 * 109.46981 * 210.00196 * 22 20 18 25 25 H 1.48500 * 109.46794 * 329.99854 * 22 20 18 26 26 C 1.46925 * 118.73856 * 306.31536 * 17 16 15 27 27 C 1.53044 * 109.45681 * 120.00184 * 14 4 3 28 28 H 1.08996 * 109.47386 * 300.00046 * 1 2 3 29 29 H 1.09005 * 109.47004 * 60.00599 * 1 2 3 30 30 H 1.09002 * 109.47008 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47312 * 239.99197 * 2 1 3 32 32 H 1.09005 * 109.47004 * 119.99401 * 2 1 3 33 33 H 1.08993 * 109.47485 * 59.99782 * 3 2 1 34 34 H 1.09002 * 109.47344 * 299.99389 * 3 2 1 35 35 H 1.09000 * 109.47297 * 299.99919 * 7 5 4 36 36 H 1.08994 * 109.47321 * 60.00366 * 7 5 4 37 37 H 1.09000 * 109.47175 * 299.99744 * 8 7 5 38 38 H 1.08997 * 109.47685 * 59.99994 * 8 7 5 39 39 H 0.97001 * 120.00193 * 359.97438 * 9 8 7 40 40 H 0.96999 * 119.99405 * 359.97438 * 12 10 9 41 41 H 1.09006 * 109.46857 * 299.99560 * 13 12 10 42 42 H 1.08991 * 109.47565 * 59.99622 * 13 12 10 43 43 H 1.09001 * 109.46877 * 180.02562 * 13 12 10 44 44 H 1.08997 * 109.45697 * 0.03389 * 14 4 3 45 45 H 1.08996 * 109.68537 * 58.71419 * 15 14 4 46 46 H 1.09000 * 109.47180 * 298.51335 * 15 14 4 47 47 H 1.08997 * 109.58387 * 294.71773 * 16 15 14 48 48 H 1.08993 * 109.58533 * 174.43928 * 16 15 14 49 49 H 0.96996 * 119.99787 * 179.97438 * 21 20 18 50 50 H 1.08998 * 109.58495 * 173.39541 * 26 17 16 51 51 H 1.09000 * 109.58924 * 293.68296 * 26 17 16 52 52 H 1.08996 * 109.49900 * 61.43623 * 27 14 4 53 53 H 1.08999 * 109.52516 * 301.35463 * 27 14 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4424 0.0000 4 7 3.5049 1.4425 0.0006 5 6 4.1784 1.4426 1.1680 6 8 5.3912 1.4421 1.1685 7 6 3.4244 1.4433 2.4728 8 6 4.4182 1.4440 3.6361 9 7 3.6852 1.4441 4.9046 10 6 4.3586 1.4441 6.0720 11 8 5.5744 1.4436 6.0726 12 7 3.6842 1.4447 7.2390 13 6 4.4162 1.4453 8.5080 14 6 4.2380 1.4422 -1.2679 15 6 5.1168 0.1880 -1.3486 16 6 5.8549 0.1773 -2.6910 17 7 6.5891 1.4412 -2.8403 18 6 7.9309 1.4405 -3.1135 19 1 8.5477 0.6156 -2.7885 20 6 8.4983 2.5000 -3.8081 21 7 7.7324 3.3268 -4.4878 22 14 10.3491 2.7521 -3.7782 23 1 10.9684 2.0069 -4.9035 24 1 10.6538 4.1990 -3.9155 25 1 10.8961 2.2509 -2.4919 26 6 5.8562 2.7058 -2.6907 27 6 5.1178 2.6918 -1.3485 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 1.6766 1.9563 0.8899 34 1 1.6767 1.9563 -0.8900 35 1 2.7980 2.3336 2.5300 36 1 2.7974 0.5536 2.5306 37 1 5.0448 0.5540 3.5792 38 1 5.0449 2.3339 3.5782 39 1 2.7152 1.4441 4.9043 40 1 2.7142 1.4455 7.2386 41 1 5.0428 0.5553 8.5664 42 1 5.0429 2.3352 8.5656 43 1 3.7076 1.4453 9.3362 44 1 3.5299 1.4426 -2.0965 45 1 4.4936 -0.7027 -1.2690 46 1 5.8418 0.1994 -0.5348 47 1 5.1351 0.0747 -3.5030 48 1 6.5554 -0.6574 -2.7161 49 1 8.1289 4.0673 -4.9729 50 1 6.5579 3.5395 -2.7130 51 1 5.1383 2.8105 -3.5041 52 1 5.8427 2.6796 -0.5346 53 1 4.4943 3.5822 -1.2670 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001479992412.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:12:52 Heat of formation + Delta-G solvation = -76.238292 kcal Electronic energy + Delta-G solvation = -30983.695737 eV Core-core repulsion = 26889.720289 eV Total energy + Delta-G solvation = -4093.975448 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.226 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.49270 -40.90493 -38.77904 -37.16137 -36.38854 -35.57909 -34.90086 -33.41612 -32.32265 -31.60744 -30.95206 -27.76085 -27.27160 -26.53172 -24.89721 -23.86302 -23.31457 -22.52127 -22.08428 -21.11865 -20.14794 -19.33435 -18.82451 -17.77673 -17.34099 -17.08666 -16.97690 -16.71009 -16.28897 -15.65076 -15.45741 -15.41848 -15.34259 -15.22166 -15.09425 -14.82023 -14.41092 -14.34035 -14.09281 -13.95007 -13.80349 -13.32200 -13.07094 -13.02598 -12.97800 -12.94263 -12.66016 -12.59604 -12.53590 -12.49641 -12.20438 -12.13213 -11.99675 -11.79180 -11.55450 -11.50697 -11.36226 -11.19480 -10.62031 -10.46363 -10.44105 -9.81255 -9.50514 -8.68842 -7.90166 -5.33816 1.41297 1.43946 1.54334 1.60095 1.72877 2.11587 2.16110 2.48750 3.24553 3.32071 3.63018 3.68482 3.76908 4.03259 4.04383 4.07258 4.10937 4.27362 4.37234 4.46899 4.47360 4.51716 4.54137 4.66228 4.66647 4.68579 4.76783 4.83227 4.87746 4.90044 4.91331 4.97615 5.00182 5.05324 5.10279 5.17596 5.31053 5.35794 5.39825 5.45307 5.48678 5.50578 5.55499 5.62573 5.69262 5.82703 6.01163 6.37828 6.58011 7.12867 7.13417 7.33556 7.58263 7.84955 8.35455 9.16312 Molecular weight = 340.23amu Principal moments of inertia in cm(-1) A = 0.010150 B = 0.002835 C = 0.002315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2758.037286 B = 9875.196323 C =12093.757230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.140 4.140 3 C 0.101 3.899 4 N -0.605 5.605 5 C 0.504 3.496 6 O -0.575 6.575 7 C -0.132 4.132 8 C 0.161 3.839 9 N -0.725 5.725 10 C 0.690 3.310 11 O -0.646 6.646 12 N -0.734 5.734 13 C 0.102 3.898 14 C 0.171 3.829 15 C -0.131 4.131 16 C 0.146 3.854 17 N -0.610 5.610 18 C -0.262 4.262 19 H 0.056 0.944 20 C -0.049 4.049 21 N -0.931 5.931 22 Si 0.963 3.037 23 H -0.279 1.279 24 H -0.288 1.288 25 H -0.280 1.280 26 C 0.183 3.817 27 C -0.139 4.139 28 H 0.073 0.927 29 H 0.055 0.945 30 H 0.056 0.944 31 H 0.050 0.950 32 H 0.067 0.933 33 H 0.110 0.890 34 H 0.085 0.915 35 H 0.134 0.866 36 H 0.133 0.867 37 H 0.043 0.957 38 H 0.042 0.958 39 H 0.419 0.581 40 H 0.418 0.582 41 H 0.043 0.957 42 H 0.042 0.958 43 H 0.118 0.882 44 H 0.093 0.907 45 H 0.075 0.925 46 H 0.050 0.950 47 H 0.025 0.975 48 H 0.047 0.953 49 H 0.251 0.749 50 H 0.048 0.952 51 H 0.007 0.993 52 H 0.047 0.953 53 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.180 -4.730 21.015 33.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.179 4.179 3 C -0.021 4.021 4 N -0.336 5.336 5 C 0.293 3.707 6 O -0.455 6.455 7 C -0.171 4.171 8 C 0.035 3.965 9 N -0.383 5.383 10 C 0.389 3.611 11 O -0.528 6.528 12 N -0.390 5.390 13 C -0.042 4.042 14 C 0.068 3.932 15 C -0.170 4.170 16 C 0.020 3.980 17 N -0.333 5.333 18 C -0.393 4.393 19 H 0.074 0.926 20 C -0.244 4.244 21 N -0.577 5.577 22 Si 0.791 3.209 23 H -0.205 1.205 24 H -0.214 1.214 25 H -0.205 1.205 26 C 0.057 3.943 27 C -0.178 4.178 28 H 0.092 0.908 29 H 0.074 0.926 30 H 0.075 0.925 31 H 0.069 0.931 32 H 0.086 0.914 33 H 0.128 0.872 34 H 0.103 0.897 35 H 0.152 0.848 36 H 0.151 0.849 37 H 0.062 0.938 38 H 0.060 0.940 39 H 0.256 0.744 40 H 0.255 0.745 41 H 0.061 0.939 42 H 0.061 0.939 43 H 0.136 0.864 44 H 0.111 0.889 45 H 0.093 0.907 46 H 0.069 0.931 47 H 0.043 0.957 48 H 0.065 0.935 49 H 0.060 0.940 50 H 0.066 0.934 51 H 0.025 0.975 52 H 0.066 0.934 53 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -23.420 -4.604 20.932 31.746 hybrid contribution 0.868 0.292 -0.566 1.077 sum -22.551 -4.312 20.366 30.691 Atomic orbital electron populations 1.21672 0.93480 1.02297 1.02816 1.21943 0.97286 0.96325 1.02312 1.22040 0.76825 0.98001 1.05188 1.48266 1.07893 1.72656 1.04799 1.21045 0.87649 0.75570 0.86456 1.90780 1.16475 1.50394 1.87803 1.21793 0.98612 1.07943 0.88794 1.20580 0.93636 1.01133 0.81165 1.44730 1.10488 1.79682 1.03377 1.16321 0.85051 0.77797 0.81887 1.90946 1.14676 1.59799 1.87377 1.44769 1.10717 1.79476 1.04083 1.21535 0.97874 1.00963 0.83843 1.20813 0.92896 0.94217 0.85321 1.22265 0.98915 0.97334 0.98532 1.20982 0.94177 0.88295 0.94501 1.44256 1.05596 1.01189 1.82298 1.19417 0.84884 1.06611 1.28364 0.92579 1.25727 1.01829 0.99862 0.97014 1.70154 1.35410 1.18619 1.33546 0.85346 0.80878 0.76839 0.77838 1.20487 1.21435 1.20499 1.20511 0.93150 0.88949 0.91680 1.22346 0.98859 0.97351 0.99287 0.90786 0.92557 0.92492 0.93144 0.91448 0.87233 0.89657 0.84820 0.84898 0.93824 0.93987 0.74360 0.74509 0.93857 0.93913 0.86383 0.88935 0.90675 0.93124 0.95662 0.93465 0.94015 0.93352 0.97494 0.93398 0.91935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.07 9.91 71.98 0.71 -0.35 16 2 C -0.14 -1.62 6.26 30.59 0.19 -1.43 16 3 C 0.10 1.34 5.18 86.38 0.45 1.79 16 4 N -0.60 -14.64 2.42 -797.10 -1.93 -16.57 16 5 C 0.50 13.77 7.10 87.66 0.62 14.39 16 6 O -0.58 -23.15 12.23 -3.03 -0.04 -23.18 16 7 C -0.13 -1.99 4.37 29.85 0.13 -1.86 16 8 C 0.16 3.68 4.96 86.38 0.43 4.11 16 9 N -0.73 -11.42 5.56 -478.53 -2.66 -14.08 16 10 C 0.69 15.51 8.57 179.05 1.53 17.04 16 11 O -0.65 -22.96 16.34 -3.98 -0.07 -23.03 16 12 N -0.73 -9.10 5.72 -500.19 -2.86 -11.96 16 13 C 0.10 1.17 10.70 127.77 1.37 2.54 16 14 C 0.17 5.65 2.51 45.12 0.11 5.76 16 15 C -0.13 -4.90 5.30 30.78 0.16 -4.73 16 16 C 0.15 6.53 6.50 86.36 0.56 7.09 16 17 N -0.61 -33.17 2.99 -699.09 -2.09 -35.26 16 18 C -0.26 -15.73 9.58 84.03 0.81 -14.93 16 19 H 0.06 3.36 7.89 -2.91 -0.02 3.33 16 20 C -0.05 -2.92 4.92 84.86 0.42 -2.50 16 21 N -0.93 -57.42 11.20 21.65 0.24 -57.17 16 22 Si 0.96 48.24 29.59 68.60 2.03 50.27 16 23 H -0.28 -13.44 7.11 99.48 0.71 -12.74 16 24 H -0.29 -14.25 7.11 99.48 0.71 -13.55 16 25 H -0.28 -13.90 7.11 99.48 0.71 -13.19 16 26 C 0.18 9.42 5.30 86.36 0.46 9.88 16 27 C -0.14 -5.77 5.27 30.68 0.16 -5.61 16 28 H 0.07 0.28 8.14 -2.39 -0.02 0.26 16 29 H 0.06 0.44 8.14 -2.38 -0.02 0.42 16 30 H 0.06 0.44 8.14 -2.39 -0.02 0.42 16 31 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 32 H 0.07 0.73 7.22 -2.38 -0.02 0.72 16 33 H 0.11 0.73 6.44 -2.39 -0.02 0.72 16 34 H 0.09 1.11 7.92 -2.39 -0.02 1.09 16 35 H 0.13 1.09 7.40 -2.39 -0.02 1.08 16 36 H 0.13 1.11 7.19 -2.39 -0.02 1.09 16 37 H 0.04 1.29 8.10 -2.39 -0.02 1.27 16 38 H 0.04 1.26 8.10 -2.39 -0.02 1.25 16 39 H 0.42 2.28 8.49 -92.71 -0.79 1.50 16 40 H 0.42 1.45 8.84 -92.71 -0.82 0.63 16 41 H 0.04 0.64 8.14 -2.38 -0.02 0.62 16 42 H 0.04 0.64 8.14 -2.39 -0.02 0.62 16 43 H 0.12 0.32 8.14 -2.39 -0.02 0.30 16 44 H 0.09 2.79 7.79 -2.39 -0.02 2.77 16 45 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 46 H 0.05 2.26 6.22 -2.39 -0.01 2.25 16 47 H 0.03 1.08 8.14 -2.39 -0.02 1.06 16 48 H 0.05 2.12 7.93 -2.39 -0.02 2.10 16 49 H 0.25 14.87 8.31 -92.71 -0.77 14.10 16 50 H 0.05 2.85 6.06 -2.39 -0.01 2.83 16 51 H 0.01 0.37 8.14 -2.39 -0.02 0.35 16 52 H 0.05 2.33 6.21 -2.39 -0.01 2.31 16 53 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 Total: -1.00 -90.83 413.47 0.04 -90.79 By element: Atomic # 1 Polarization: 9.71 SS G_CDS: -0.70 Total: 9.01 kcal Atomic # 6 Polarization: 23.07 SS G_CDS: 8.11 Total: 31.19 kcal Atomic # 7 Polarization: -125.74 SS G_CDS: -9.30 Total: -135.04 kcal Atomic # 8 Polarization: -46.11 SS G_CDS: -0.10 Total: -46.21 kcal Atomic # 14 Polarization: 48.24 SS G_CDS: 2.03 Total: 50.27 kcal Total: -90.83 0.04 -90.79 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001479992412.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.550 kcal (2) G-P(sol) polarization free energy of solvation -90.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.279 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.789 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds