Wall clock time and date at job start Sat Apr 11 2020 06:13:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.46995 * 2 1 4 4 H 1.08993 * 109.47672 * 302.43141 * 3 2 1 5 5 C 1.50703 * 109.46956 * 182.42953 * 3 2 1 6 6 O 1.21277 * 120.00134 * 245.45669 * 5 3 2 7 7 N 1.34775 * 119.99773 * 65.46573 * 5 3 2 8 8 C 1.46504 * 120.00146 * 179.97438 * 7 5 3 9 9 H 1.08999 * 109.49747 * 324.91916 * 8 7 5 10 10 C 1.53124 * 109.50420 * 84.99236 * 8 7 5 11 11 C 1.53119 * 109.16057 * 177.63578 * 10 8 7 12 12 C 1.53040 * 109.27714 * 302.35126 * 11 10 8 13 13 N 1.46840 * 109.52594 * 59.17841 * 12 11 10 14 14 C 1.46903 * 111.00216 * 174.15895 * 13 12 11 15 15 C 1.50694 * 109.47319 * 191.26288 * 14 13 12 16 16 O 1.21294 * 120.00460 * 5.07147 * 15 14 13 17 17 N 1.34779 * 120.00014 * 185.07491 * 15 14 13 18 18 C 1.37097 * 120.00183 * 180.02562 * 17 15 14 19 19 H 1.07997 * 119.99790 * 359.97438 * 18 17 15 20 20 C 1.38954 * 120.00049 * 179.97438 * 18 17 15 21 21 N 1.31411 * 120.00050 * 359.97438 * 20 18 17 22 22 Si 1.86801 * 119.99717 * 179.97438 * 20 18 17 23 23 H 1.48505 * 109.46841 * 90.00152 * 22 20 18 24 24 H 1.48499 * 109.46837 * 209.99789 * 22 20 18 25 25 H 1.48493 * 109.47454 * 330.00165 * 22 20 18 26 26 C 1.46848 * 111.19968 * 298.25864 * 13 12 11 27 27 N 1.46902 * 109.47294 * 62.43491 * 3 2 1 28 28 C 1.46898 * 111.00086 * 59.30975 * 27 3 2 29 29 C 1.46900 * 111.00443 * 183.26716 * 27 3 2 30 30 H 1.09001 * 109.47605 * 64.88025 * 1 2 3 31 31 H 1.08999 * 109.47225 * 184.88427 * 1 2 3 32 32 H 1.09000 * 109.47062 * 304.88233 * 1 2 3 33 33 H 1.08999 * 109.46833 * 240.00532 * 2 1 3 34 34 H 1.08997 * 109.47305 * 119.99886 * 2 1 3 35 35 H 0.96999 * 120.00171 * 359.97438 * 7 5 3 36 36 H 1.09004 * 109.51767 * 57.73016 * 10 8 7 37 37 H 1.08993 * 109.57422 * 297.57790 * 10 8 7 38 38 H 1.09006 * 109.49830 * 62.28549 * 11 10 8 39 39 H 1.09000 * 109.50298 * 182.40561 * 11 10 8 40 40 H 1.09002 * 109.45784 * 179.19514 * 12 11 10 41 41 H 1.08997 * 109.45872 * 299.16070 * 12 11 10 42 42 H 1.09002 * 109.46963 * 311.26389 * 14 13 12 43 43 H 1.08996 * 109.46808 * 71.25777 * 14 13 12 44 44 H 0.97004 * 119.99697 * 359.97438 * 17 15 14 45 45 H 0.96994 * 120.00188 * 180.02562 * 21 20 18 46 46 H 1.09002 * 109.45843 * 301.72558 * 26 13 12 47 47 H 1.09000 * 109.45688 * 181.75410 * 26 13 12 48 48 H 1.08998 * 109.47086 * 66.80706 * 28 27 3 49 49 H 1.09001 * 109.47592 * 186.80650 * 28 27 3 50 50 H 1.09001 * 109.47370 * 306.80749 * 28 27 3 51 51 H 1.09005 * 109.46991 * 64.66759 * 29 27 3 52 52 H 1.08997 * 109.47173 * 184.66873 * 29 27 3 53 53 H 1.08997 * 109.46830 * 304.67433 * 29 27 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6415 1.9688 -0.8673 5 6 3.5458 1.4429 -0.0602 6 8 4.1900 1.8658 0.8762 7 7 4.1765 0.9735 -1.1549 8 6 5.6403 0.9744 -1.2137 9 1 6.0247 1.8536 -0.6968 10 6 6.1798 -0.2908 -0.5407 11 6 7.7063 -0.3109 -0.6587 12 6 8.0998 -0.2460 -2.1362 13 7 7.5609 0.9820 -2.7342 14 6 8.0344 1.1471 -4.1150 15 6 7.6962 2.5332 -4.5998 16 8 7.2009 3.3378 -3.8391 17 7 7.9440 2.8790 -5.8787 18 6 7.6368 4.1403 -6.3196 19 1 7.1958 4.8566 -5.6423 20 6 7.8927 4.4969 -7.6380 21 7 8.4297 3.6255 -8.4620 22 14 7.4735 6.2153 -8.2389 23 1 8.6399 7.1106 -8.0310 24 1 7.1387 6.1660 -9.6848 25 1 6.3088 6.7351 -7.4785 26 6 6.0937 1.0019 -2.6751 27 7 1.5989 2.1178 1.2278 28 6 2.1047 1.4252 2.4204 29 6 2.0049 3.5296 1.2271 30 1 -0.3634 0.4362 -0.9304 31 1 -0.3633 -1.0239 0.0875 32 1 -0.3633 0.5877 0.8430 33 1 1.8932 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 3.6612 0.6350 -1.9038 36 1 5.7648 -1.1704 -1.0330 37 1 5.8956 -0.2942 0.5115 38 1 8.1232 0.5483 -0.1331 39 1 8.0932 -1.2302 -0.2190 40 1 9.1863 -0.2457 -2.2230 41 1 7.6941 -1.1126 -2.6584 42 1 9.1145 1.0040 -4.1482 43 1 7.5504 0.4099 -4.7555 44 1 8.3404 2.2357 -6.4869 45 1 8.6088 3.8745 -9.3822 46 1 5.6975 0.1296 -3.1948 47 1 5.7233 1.9088 -3.1532 48 1 3.1899 1.5192 2.4622 49 1 1.6668 1.8717 3.3131 50 1 1.8330 0.3708 2.3708 51 1 1.4939 4.0542 0.4196 52 1 1.7392 3.9845 2.1813 53 1 3.0827 3.5976 1.0796 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001481538688.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:13:01 Heat of formation + Delta-G solvation = -83.904820 kcal Electronic energy + Delta-G solvation = -31135.015724 eV Core-core repulsion = 27040.707830 eV Total energy + Delta-G solvation = -4094.307894 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.226 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.70843 -40.61897 -39.33495 -37.73398 -36.11761 -35.78957 -34.14875 -33.49487 -33.21816 -30.94237 -29.03654 -28.55853 -28.20637 -26.52125 -24.49236 -24.23241 -23.77351 -22.35020 -21.23786 -21.03588 -20.58474 -19.86898 -18.38603 -17.78235 -17.68496 -16.89090 -16.54715 -16.34560 -16.31824 -16.27148 -15.75923 -15.72867 -15.58934 -15.31478 -14.86534 -14.76493 -14.53530 -14.39194 -14.03126 -13.81904 -13.55544 -13.32257 -13.26563 -13.07051 -13.01365 -12.82565 -12.72791 -12.64074 -12.48190 -12.42650 -12.38142 -12.13587 -11.92405 -11.87959 -11.77708 -11.65665 -11.58332 -11.44861 -11.22274 -10.31693 -10.07639 -9.98839 -9.21259 -9.18305 -8.46987 -5.95200 1.36650 1.40622 1.52322 1.52854 2.02636 2.06217 2.28307 2.82028 2.91838 3.20149 3.39818 3.58732 3.79458 3.82479 3.92074 4.02655 4.05596 4.13793 4.21050 4.25256 4.32502 4.43494 4.49486 4.54668 4.60788 4.62071 4.62697 4.66381 4.68086 4.70935 4.77692 4.91003 4.96363 4.97052 4.99310 5.04895 5.09311 5.18273 5.18900 5.27229 5.35707 5.40649 5.46766 5.55361 5.86375 5.88006 5.95362 6.06872 6.22049 6.49382 6.61327 7.13568 7.19610 7.57271 8.13810 8.70420 Molecular weight = 340.23amu Principal moments of inertia in cm(-1) A = 0.011726 B = 0.002651 C = 0.002336 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2387.320693 B =10557.839442 C =11981.776322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.107 4.107 3 C 0.065 3.935 4 H 0.116 0.884 5 C 0.485 3.515 6 O -0.571 6.571 7 N -0.712 5.712 8 C 0.159 3.841 9 H 0.050 0.950 10 C -0.116 4.116 11 C -0.109 4.109 12 C 0.054 3.946 13 N -0.538 5.538 14 C 0.061 3.939 15 C 0.440 3.560 16 O -0.616 6.616 17 N -0.574 5.574 18 C -0.331 4.331 19 H 0.076 0.924 20 C -0.011 4.011 21 N -0.920 5.920 22 Si 0.989 3.011 23 H -0.273 1.273 24 H -0.269 1.269 25 H -0.274 1.274 26 C 0.060 3.940 27 N -0.510 5.510 28 C 0.003 3.997 29 C 0.012 3.988 30 H 0.058 0.942 31 H 0.063 0.937 32 H 0.060 0.940 33 H 0.085 0.915 34 H 0.066 0.934 35 H 0.411 0.589 36 H 0.081 0.919 37 H 0.056 0.944 38 H 0.052 0.948 39 H 0.099 0.901 40 H 0.088 0.912 41 H 0.053 0.947 42 H 0.113 0.887 43 H 0.072 0.928 44 H 0.396 0.604 45 H 0.277 0.723 46 H 0.052 0.948 47 H 0.057 0.943 48 H 0.041 0.959 49 H 0.070 0.930 50 H 0.077 0.923 51 H 0.071 0.929 52 H 0.076 0.924 53 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.509 -14.644 14.158 23.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.145 4.145 3 C -0.047 4.047 4 H 0.134 0.866 5 C 0.272 3.728 6 O -0.451 6.451 7 N -0.364 5.364 8 C 0.053 3.947 9 H 0.069 0.931 10 C -0.154 4.154 11 C -0.147 4.147 12 C -0.073 4.073 13 N -0.263 5.263 14 C -0.070 4.070 15 C 0.227 3.773 16 O -0.502 6.502 17 N -0.212 5.212 18 C -0.460 4.460 19 H 0.094 0.906 20 C -0.211 4.211 21 N -0.561 5.561 22 Si 0.813 3.187 23 H -0.198 1.198 24 H -0.194 1.194 25 H -0.199 1.199 26 C -0.068 4.068 27 N -0.231 5.231 28 C -0.145 4.145 29 C -0.136 4.136 30 H 0.077 0.923 31 H 0.082 0.918 32 H 0.079 0.921 33 H 0.104 0.896 34 H 0.085 0.915 35 H 0.247 0.753 36 H 0.100 0.900 37 H 0.075 0.925 38 H 0.071 0.929 39 H 0.117 0.883 40 H 0.106 0.894 41 H 0.071 0.929 42 H 0.131 0.869 43 H 0.090 0.910 44 H 0.230 0.770 45 H 0.087 0.913 46 H 0.070 0.930 47 H 0.076 0.924 48 H 0.059 0.941 49 H 0.089 0.911 50 H 0.096 0.904 51 H 0.090 0.910 52 H 0.094 0.906 53 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges -11.686 -13.412 15.421 23.542 hybrid contribution 0.776 0.337 -1.588 1.799 sum -10.910 -13.074 13.833 21.939 Atomic orbital electron populations 1.21627 0.93296 1.02075 1.02659 1.21583 0.98237 0.91405 1.03260 1.22138 0.87029 0.99471 0.96112 0.86613 1.22558 0.92537 0.75854 0.81851 1.90606 1.69128 1.47978 1.37404 1.46126 1.06924 1.63755 1.19621 1.20673 0.79820 0.98772 0.95437 0.93119 1.21856 0.96412 0.96810 1.00359 1.21530 0.94726 1.02892 0.95560 1.22271 1.00786 0.89188 0.95046 1.61266 1.08582 1.38738 1.17723 1.21722 1.02718 0.93057 0.89520 1.20846 0.83287 0.91043 0.82118 1.90500 1.49458 1.54392 1.55881 1.41935 1.55986 1.13443 1.09832 1.19605 1.40156 0.90715 0.95557 0.90626 1.25980 0.96512 1.03191 0.95433 1.69660 1.43477 1.36421 1.06535 0.84981 0.78606 0.77464 0.77620 1.19820 1.19389 1.19902 1.22142 0.88188 1.01019 0.95477 1.62553 1.56506 1.02525 1.01550 1.22715 0.99855 0.99604 0.92331 1.22517 0.98984 0.88956 1.03149 0.92322 0.91763 0.92133 0.89622 0.91500 0.75270 0.90021 0.92492 0.92907 0.88264 0.89354 0.92871 0.86870 0.90984 0.76984 0.91308 0.92976 0.92409 0.94055 0.91094 0.90437 0.91007 0.90556 0.95928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.64 9.84 71.98 0.71 -0.93 16 2 C -0.11 -1.44 5.10 30.59 0.16 -1.28 16 3 C 0.07 1.24 2.21 44.17 0.10 1.33 16 4 H 0.12 2.01 8.14 -2.39 -0.02 1.99 16 5 C 0.49 12.29 6.37 87.66 0.56 12.85 16 6 O -0.57 -18.83 11.35 -3.02 -0.03 -18.86 16 7 N -0.71 -16.57 5.03 -442.29 -2.22 -18.79 16 8 C 0.16 4.47 2.61 45.04 0.12 4.58 16 9 H 0.05 1.91 7.58 -2.39 -0.02 1.90 16 10 C -0.12 -2.55 5.58 30.68 0.17 -2.38 16 11 C -0.11 -2.28 6.09 30.65 0.19 -2.09 16 12 C 0.05 1.20 5.46 86.33 0.47 1.67 16 13 N -0.54 -16.96 4.34 -900.96 -3.91 -20.87 16 14 C 0.06 2.03 5.45 85.55 0.47 2.50 16 15 C 0.44 20.74 7.34 87.65 0.64 21.38 16 16 O -0.62 -34.32 14.27 -3.07 -0.04 -34.36 16 17 N -0.57 -29.18 5.29 -306.98 -1.62 -30.81 16 18 C -0.33 -18.75 9.68 84.04 0.81 -17.94 16 19 H 0.08 4.62 7.16 -2.91 -0.02 4.59 16 20 C -0.01 -0.61 5.50 84.93 0.47 -0.14 16 21 N -0.92 -49.28 13.05 21.66 0.28 -49.00 16 22 Si 0.99 43.01 29.55 68.60 2.03 45.04 16 23 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 24 H -0.27 -11.01 7.11 99.48 0.71 -10.31 16 25 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 26 C 0.06 1.85 4.59 86.32 0.40 2.24 16 27 N -0.51 -10.54 4.28 -927.74 -3.97 -14.51 16 28 C 0.00 0.05 8.89 127.69 1.13 1.19 16 29 C 0.01 0.28 9.36 127.69 1.19 1.47 16 30 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 31 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 32 H 0.06 0.85 7.53 -2.39 -0.02 0.84 16 33 H 0.09 0.89 7.89 -2.39 -0.02 0.87 16 34 H 0.07 0.97 6.12 -2.39 -0.01 0.95 16 35 H 0.41 7.20 8.38 -92.71 -0.78 6.42 16 36 H 0.08 1.45 8.14 -2.38 -0.02 1.43 16 37 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 38 H 0.05 1.34 8.14 -2.38 -0.02 1.32 16 39 H 0.10 1.50 8.14 -2.39 -0.02 1.48 16 40 H 0.09 1.78 8.00 -2.39 -0.02 1.76 16 41 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 42 H 0.11 3.31 7.96 -2.39 -0.02 3.29 16 43 H 0.07 2.07 8.11 -2.39 -0.02 2.05 16 44 H 0.40 19.01 7.90 -92.71 -0.73 18.28 16 45 H 0.28 13.92 8.31 -92.71 -0.77 13.14 16 46 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 47 H 0.06 2.30 6.07 -2.39 -0.01 2.28 16 48 H 0.04 1.10 5.41 -2.39 -0.01 1.08 16 49 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 50 H 0.08 1.35 5.89 -2.39 -0.01 1.33 16 51 H 0.07 1.49 8.14 -2.38 -0.02 1.47 16 52 H 0.08 1.55 8.09 -2.39 -0.02 1.53 16 53 H 0.02 0.66 5.76 -2.39 -0.01 0.64 16 Total: -1.00 -72.93 408.29 -2.50 -75.43 By element: Atomic # 1 Polarization: 42.87 SS G_CDS: -0.59 Total: 42.28 kcal Atomic # 6 Polarization: 16.87 SS G_CDS: 7.58 Total: 24.45 kcal Atomic # 7 Polarization: -122.54 SS G_CDS: -11.44 Total: -133.98 kcal Atomic # 8 Polarization: -53.14 SS G_CDS: -0.08 Total: -53.22 kcal Atomic # 14 Polarization: 43.01 SS G_CDS: 2.03 Total: 45.04 kcal Total: -72.93 -2.50 -75.43 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481538688.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.475 kcal (2) G-P(sol) polarization free energy of solvation -72.925 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.400 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.505 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.430 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds