Wall clock time and date at job start Sat Apr 11 2020 06:13:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52998 * 109.47161 * 2 1 4 4 C 1.53001 * 109.47319 * 119.99980 * 2 1 3 5 5 H 1.08997 * 109.46846 * 296.52254 * 4 2 1 6 6 C 1.50703 * 109.47159 * 56.52446 * 4 2 1 7 7 O 1.21273 * 120.00273 * 109.98748 * 6 4 2 8 8 N 1.34777 * 119.99296 * 289.98259 * 6 4 2 9 9 C 1.46501 * 119.99309 * 174.97270 * 8 6 4 10 10 H 1.08992 * 110.63503 * 31.89374 * 9 8 6 11 11 C 1.55142 * 110.85498 * 268.68396 * 9 8 6 12 12 C 1.54905 * 101.65632 * 205.89628 * 11 9 8 13 13 N 1.47848 * 104.79395 * 37.07093 * 12 11 9 14 14 C 1.46901 * 110.99884 * 213.63748 * 13 12 11 15 15 C 1.50695 * 109.47304 * 290.84340 * 14 13 12 16 16 O 1.21294 * 120.00172 * 359.97438 * 15 14 13 17 17 N 1.34781 * 120.00146 * 180.02562 * 15 14 13 18 18 C 1.37101 * 119.99710 * 179.72195 * 17 15 14 19 19 H 1.07998 * 120.00523 * 0.27688 * 18 17 15 20 20 C 1.38951 * 119.99686 * 180.27153 * 18 17 15 21 21 N 1.31409 * 119.99811 * 0.02562 * 20 18 17 22 22 Si 1.86794 * 119.99938 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.47290 * 0.02562 * 22 20 18 24 24 H 1.48499 * 109.47370 * 120.00284 * 22 20 18 25 25 H 1.48502 * 109.47192 * 240.00199 * 22 20 18 26 26 C 1.47441 * 108.56754 * 335.90193 * 13 12 11 27 27 N 1.46901 * 109.47292 * 176.52379 * 4 2 1 28 28 C 1.46909 * 110.99880 * 320.72985 * 27 4 2 29 29 C 1.46895 * 111.00241 * 84.68301 * 27 4 2 30 30 H 1.09003 * 109.47319 * 300.03088 * 1 2 3 31 31 H 1.08997 * 109.47552 * 60.03945 * 1 2 3 32 32 H 1.09004 * 109.46739 * 180.02562 * 1 2 3 33 33 H 1.09005 * 109.47279 * 239.99965 * 2 1 3 34 34 H 1.08998 * 109.47632 * 194.89792 * 3 2 1 35 35 H 1.09009 * 109.46873 * 314.89728 * 3 2 1 36 36 H 1.09006 * 109.47371 * 74.88918 * 3 2 1 37 37 H 0.96994 * 120.00519 * 354.97562 * 8 6 4 38 38 H 1.08995 * 110.99367 * 323.98893 * 11 9 8 39 39 H 1.09001 * 110.98896 * 87.76676 * 11 9 8 40 40 H 1.08999 * 110.37428 * 278.24526 * 12 11 9 41 41 H 1.08995 * 110.37703 * 155.89856 * 12 11 9 42 42 H 1.09009 * 109.47094 * 170.84079 * 14 13 12 43 43 H 1.09002 * 109.47318 * 50.84252 * 14 13 12 44 44 H 0.96994 * 119.99571 * 359.97438 * 17 15 14 45 45 H 0.97003 * 119.99771 * 179.97438 * 21 20 18 46 46 H 1.09009 * 109.88481 * 120.39613 * 26 13 12 47 47 H 1.08992 * 109.89262 * 241.58526 * 26 13 12 48 48 H 1.09004 * 109.46644 * 67.15098 * 28 27 4 49 49 H 1.08996 * 109.47015 * 187.14738 * 28 27 4 50 50 H 1.08995 * 109.47162 * 307.15119 * 28 27 4 51 51 H 1.09003 * 109.46798 * 66.87164 * 29 27 4 52 52 H 1.09004 * 109.47561 * 186.87196 * 29 27 4 53 53 H 1.08998 * 109.47636 * 306.87144 * 29 27 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 1 1.7285 -0.1727 2.1381 6 6 1.4686 -2.1150 1.2931 7 8 2.1899 -3.0722 1.1081 8 7 0.1559 -2.2977 1.5381 9 6 -0.4212 -3.6426 1.4720 10 1 0.3120 -4.3905 1.7735 11 6 -0.9582 -3.9438 0.0480 12 6 -2.0532 -4.9990 0.3431 13 7 -2.6660 -4.5614 1.6154 14 6 -3.0891 -5.7153 2.4202 15 6 -4.2571 -6.3930 1.7515 16 8 -4.6946 -5.9574 0.7074 17 7 -4.8165 -7.4826 2.3140 18 6 -5.8828 -8.0957 1.7085 19 1 -6.2718 -7.7083 0.7784 20 6 -6.4631 -9.2157 2.2914 21 7 -5.9901 -9.6868 3.4232 22 14 -7.9155 -10.0515 1.4660 23 1 -8.2533 -9.3320 0.2117 24 1 -7.5623 -11.4586 1.1492 25 1 -9.0851 -10.0286 2.3807 26 6 -1.6881 -3.7363 2.3482 27 7 3.5066 -0.7944 1.2080 28 6 3.9820 -1.0676 -0.1550 29 6 4.1102 0.4348 1.7394 30 1 -0.3634 0.5143 0.8897 31 1 -0.3634 0.5132 -0.8903 32 1 -0.3633 -1.0277 0.0005 33 1 1.8933 -0.5139 -0.8900 34 1 3.0974 1.4541 -0.2642 35 1 1.4771 2.0268 -0.7280 36 1 1.9085 1.8744 0.9922 37 1 -0.4066 -1.5387 1.7580 38 1 -1.3887 -3.0504 -0.4041 39 1 -0.1744 -4.3601 -0.5849 40 1 -1.6072 -5.9871 0.4568 41 1 -2.7971 -5.0069 -0.4534 42 1 -3.3851 -5.3768 3.4132 43 1 -2.2620 -6.4198 2.5082 44 1 -4.4669 -7.8307 3.1491 45 1 -6.3954 -10.4684 3.8303 46 1 -2.0966 -2.7399 2.5173 47 1 -1.4460 -4.2068 3.3010 48 1 3.7639 -0.2120 -0.7941 49 1 5.0576 -1.2424 -0.1364 50 1 3.4770 -1.9510 -0.5456 51 1 3.8970 0.5127 2.8056 52 1 5.1890 0.4059 1.5858 53 1 3.6926 1.2982 1.2214 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001481708321.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:13:06 Heat of formation + Delta-G solvation = -65.033861 kcal Electronic energy + Delta-G solvation = -30696.631462 eV Core-core repulsion = 26603.141875 eV Total energy + Delta-G solvation = -4093.489587 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.226 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.68355 -40.59039 -39.41184 -38.40675 -36.06444 -35.68057 -34.41711 -33.28735 -32.16616 -30.07139 -29.11970 -28.63670 -27.82240 -27.73341 -25.97251 -23.62930 -22.56988 -22.32417 -21.59528 -20.99009 -20.69910 -19.87911 -18.40378 -17.80898 -17.50155 -16.95419 -16.80647 -16.50850 -16.37552 -16.05121 -15.74408 -15.58127 -15.47770 -15.29717 -14.79468 -14.45548 -14.32087 -13.91426 -13.75833 -13.62248 -13.44479 -13.40021 -13.31480 -13.25699 -13.00409 -12.82853 -12.78079 -12.69417 -12.64685 -12.51560 -12.39660 -12.23504 -12.16060 -12.11321 -11.94008 -11.83584 -11.61618 -11.48614 -10.70674 -10.31963 -9.99696 -9.94645 -9.25683 -9.07752 -8.45808 -5.94178 1.36750 1.41708 1.55947 1.65889 2.01653 2.07161 2.29579 2.81210 3.10959 3.20914 3.33236 3.56604 3.69034 3.73062 3.74924 3.93129 4.03550 4.24472 4.26496 4.28715 4.31473 4.34480 4.35909 4.43973 4.45574 4.52499 4.58454 4.67173 4.72554 4.75392 4.78495 4.83186 4.89426 4.90582 4.94540 5.05116 5.06995 5.07640 5.12474 5.21716 5.36292 5.39457 5.42073 5.52361 5.84598 5.95810 5.98409 6.10067 6.12978 6.60714 6.62066 7.14337 7.32044 7.57960 8.13912 8.71932 Molecular weight = 340.23amu Principal moments of inertia in cm(-1) A = 0.033157 B = 0.001862 C = 0.001828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 844.272324 B =15036.403874 C =15311.411691 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.116 4.116 3 C -0.149 4.149 4 C 0.076 3.924 5 H 0.123 0.877 6 C 0.519 3.481 7 O -0.566 6.566 8 N -0.706 5.706 9 C 0.133 3.867 10 H 0.080 0.920 11 C -0.126 4.126 12 C 0.055 3.945 13 N -0.518 5.518 14 C 0.050 3.950 15 C 0.442 3.558 16 O -0.615 6.615 17 N -0.576 5.576 18 C -0.330 4.330 19 H 0.079 0.921 20 C -0.015 4.015 21 N -0.921 5.921 22 Si 0.993 3.007 23 H -0.273 1.273 24 H -0.272 1.272 25 H -0.270 1.270 26 C 0.042 3.958 27 N -0.545 5.545 28 C 0.027 3.973 29 C 0.004 3.996 30 H 0.078 0.922 31 H 0.064 0.936 32 H 0.061 0.939 33 H 0.066 0.934 34 H 0.062 0.938 35 H 0.066 0.934 36 H 0.073 0.927 37 H 0.416 0.584 38 H 0.087 0.913 39 H 0.071 0.929 40 H 0.034 0.966 41 H 0.064 0.936 42 H 0.114 0.886 43 H 0.067 0.933 44 H 0.396 0.604 45 H 0.277 0.723 46 H 0.102 0.898 47 H 0.076 0.924 48 H 0.047 0.953 49 H 0.067 0.933 50 H 0.049 0.951 51 H 0.071 0.929 52 H 0.070 0.930 53 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.886 24.209 -1.263 30.731 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.136 4.136 3 C -0.205 4.205 4 C -0.036 4.036 5 H 0.140 0.860 6 C 0.306 3.694 7 O -0.444 6.444 8 N -0.362 5.362 9 C 0.026 3.974 10 H 0.098 0.902 11 C -0.165 4.165 12 C -0.073 4.073 13 N -0.242 5.242 14 C -0.081 4.081 15 C 0.229 3.771 16 O -0.500 6.500 17 N -0.214 5.214 18 C -0.460 4.460 19 H 0.097 0.903 20 C -0.215 4.215 21 N -0.563 5.563 22 Si 0.817 3.183 23 H -0.198 1.198 24 H -0.197 1.197 25 H -0.196 1.196 26 C -0.086 4.086 27 N -0.268 5.268 28 C -0.121 4.121 29 C -0.143 4.143 30 H 0.097 0.903 31 H 0.083 0.917 32 H 0.080 0.920 33 H 0.085 0.915 34 H 0.081 0.919 35 H 0.085 0.915 36 H 0.092 0.908 37 H 0.256 0.744 38 H 0.106 0.894 39 H 0.090 0.910 40 H 0.052 0.948 41 H 0.083 0.917 42 H 0.132 0.868 43 H 0.085 0.915 44 H 0.229 0.771 45 H 0.086 0.914 46 H 0.120 0.880 47 H 0.094 0.906 48 H 0.065 0.935 49 H 0.086 0.914 50 H 0.067 0.933 51 H 0.090 0.910 52 H 0.089 0.911 53 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 18.779 23.562 -1.759 30.182 hybrid contribution -0.404 -0.827 -0.211 0.944 sum 18.375 22.736 -1.970 29.299 Atomic orbital electron populations 1.22229 0.93654 1.03044 1.03611 1.21662 0.97555 0.97377 0.97010 1.22134 1.01127 0.94048 1.03232 1.21802 0.89177 0.91592 1.01038 0.85957 1.21064 0.81503 0.91890 0.74950 1.90675 1.59800 1.44136 1.49758 1.46117 1.09303 1.09422 1.71313 1.21960 0.94696 0.85574 0.95162 0.90165 1.23021 0.96906 0.99364 0.97184 1.22856 0.95290 0.96536 0.92630 1.63222 1.38008 1.18979 1.04007 1.22028 0.95438 0.92820 0.97803 1.20768 0.87184 0.82258 0.86871 1.90481 1.66636 1.66716 1.26210 1.41942 1.29795 1.25728 1.23942 1.19684 1.08973 1.10024 1.07276 0.90338 1.26040 1.01590 0.97203 0.96638 1.69681 1.43010 1.25093 1.18484 0.84869 0.77500 0.77857 0.78099 1.19804 1.19736 1.19556 1.23144 0.89176 1.00031 0.96278 1.61715 1.04697 1.37057 1.23306 1.22416 1.00776 1.00259 0.88639 1.22901 1.00160 0.90359 1.00863 0.90337 0.91693 0.92013 0.91534 0.91894 0.91468 0.90835 0.74428 0.89444 0.91032 0.94787 0.91738 0.86767 0.91545 0.77072 0.91369 0.87953 0.90580 0.93479 0.91391 0.93255 0.90997 0.91106 0.91690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.60 7.82 71.98 0.56 -1.03 16 2 C -0.12 -1.25 1.96 -10.80 -0.02 -1.28 16 3 C -0.15 -1.02 7.39 71.98 0.53 -0.49 16 4 C 0.08 1.07 1.95 44.17 0.09 1.15 16 5 H 0.12 1.18 7.82 -2.39 -0.02 1.17 16 6 C 0.52 10.77 6.65 87.66 0.58 11.36 16 7 O -0.57 -17.18 14.83 -3.01 -0.04 -17.23 16 8 N -0.71 -11.89 3.52 -436.95 -1.54 -13.42 16 9 C 0.13 2.91 3.34 46.17 0.15 3.06 16 10 H 0.08 2.10 7.48 -2.39 -0.02 2.08 16 11 C -0.13 -3.10 6.77 31.98 0.22 -2.88 16 12 C 0.05 1.78 5.75 86.77 0.50 2.28 16 13 N -0.52 -16.33 4.86 -890.09 -4.33 -20.66 16 14 C 0.05 1.75 5.05 85.56 0.43 2.18 16 15 C 0.44 21.23 7.58 87.65 0.66 21.89 16 16 O -0.61 -34.18 14.61 -3.07 -0.04 -34.22 16 17 N -0.58 -29.90 5.29 -306.98 -1.62 -31.53 16 18 C -0.33 -18.93 9.68 84.04 0.81 -18.12 16 19 H 0.08 4.81 7.16 -2.91 -0.02 4.79 16 20 C -0.02 -0.83 5.50 84.93 0.47 -0.36 16 21 N -0.92 -50.22 13.05 21.66 0.28 -49.94 16 22 Si 0.99 43.43 29.55 68.60 2.03 45.45 16 23 H -0.27 -12.08 7.11 99.48 0.71 -11.38 16 24 H -0.27 -11.41 7.11 99.48 0.71 -10.71 16 25 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 26 C 0.04 0.91 6.61 86.65 0.57 1.48 16 27 N -0.54 -8.89 4.52 -927.71 -4.19 -13.09 16 28 C 0.03 0.44 7.94 127.69 1.01 1.46 16 29 C 0.00 0.04 9.17 127.69 1.17 1.21 16 30 H 0.08 0.46 8.04 -2.39 -0.02 0.44 16 31 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 32 H 0.06 0.78 5.06 -2.39 -0.01 0.76 16 33 H 0.07 0.96 6.22 -2.38 -0.01 0.95 16 34 H 0.06 0.45 4.93 -2.39 -0.01 0.44 16 35 H 0.07 0.42 8.06 -2.38 -0.02 0.40 16 36 H 0.07 0.35 7.46 -2.38 -0.02 0.33 16 37 H 0.42 4.62 6.49 -92.71 -0.60 4.02 16 38 H 0.09 1.98 7.78 -2.39 -0.02 1.97 16 39 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 40 H 0.03 1.15 7.62 -2.39 -0.02 1.13 16 41 H 0.06 2.50 7.38 -2.39 -0.02 2.48 16 42 H 0.11 3.40 8.03 -2.38 -0.02 3.38 16 43 H 0.07 2.11 7.85 -2.39 -0.02 2.09 16 44 H 0.40 19.50 7.90 -92.71 -0.73 18.77 16 45 H 0.28 14.09 8.31 -92.71 -0.77 13.32 16 46 H 0.10 1.82 7.72 -2.38 -0.02 1.80 16 47 H 0.08 1.50 7.55 -2.39 -0.02 1.49 16 48 H 0.05 0.59 5.16 -2.38 -0.01 0.58 16 49 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 50 H 0.05 1.08 6.71 -2.39 -0.02 1.06 16 51 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 52 H 0.07 0.69 8.07 -2.39 -0.02 0.67 16 53 H 0.06 0.44 3.84 -2.39 -0.01 0.43 16 Total: -1.00 -74.66 399.90 -2.11 -76.77 By element: Atomic # 1 Polarization: 36.34 SS G_CDS: -0.40 Total: 35.94 kcal Atomic # 6 Polarization: 14.17 SS G_CDS: 7.75 Total: 21.92 kcal Atomic # 7 Polarization: -117.23 SS G_CDS: -11.40 Total: -128.63 kcal Atomic # 8 Polarization: -51.36 SS G_CDS: -0.09 Total: -51.45 kcal Atomic # 14 Polarization: 43.43 SS G_CDS: 2.03 Total: 45.45 kcal Total: -74.66 -2.11 -76.77 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481708321.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.740 kcal (2) G-P(sol) polarization free energy of solvation -74.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.114 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.774 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds