Wall clock time and date at job start Sat Apr 11 2020 06:13:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47438 * 2 1 4 4 C 1.52999 * 109.47438 * 179.97438 * 3 2 1 5 5 C 1.53001 * 109.47292 * 180.02562 * 4 3 2 6 6 H 1.08995 * 109.46934 * 54.99401 * 5 4 3 7 7 N 1.46505 * 109.46818 * 295.00028 * 5 4 3 8 8 C 1.34776 * 119.99665 * 299.99724 * 7 5 4 9 9 N 1.34786 * 119.99849 * 179.97438 * 8 7 5 10 10 O 1.21580 * 120.00298 * 0.02562 * 8 7 5 11 11 C 1.50699 * 109.47419 * 174.99975 * 5 4 3 12 12 O 1.21277 * 119.99965 * 99.99379 * 11 5 4 13 13 N 1.34774 * 119.99731 * 280.00194 * 11 5 4 14 14 C 1.46504 * 119.99844 * 179.97438 * 13 11 5 15 15 C 1.52998 * 109.47225 * 175.53634 * 14 13 11 16 16 N 1.46506 * 110.53641 * 57.61931 * 15 14 13 17 17 C 1.36933 * 120.00401 * 58.62243 * 16 15 14 18 18 H 1.08006 * 119.99300 * 6.53639 * 17 16 15 19 19 C 1.38803 * 120.00453 * 186.53837 * 17 16 15 20 20 N 1.31631 * 120.00026 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 120.00359 * 180.02562 * 19 17 16 22 22 H 1.48503 * 109.46959 * 359.97438 * 21 19 17 23 23 H 1.48498 * 109.47222 * 119.99711 * 21 19 17 24 24 H 1.48500 * 109.47020 * 240.00051 * 21 19 17 25 25 C 1.54889 * 110.48686 * 180.22825 * 15 14 13 26 26 C 1.54895 * 102.74848 * 156.62225 * 25 15 14 27 27 C 1.54272 * 104.19256 * 322.05887 * 26 25 15 28 28 C 1.53871 * 106.60145 * 23.60982 * 27 26 25 29 29 H 1.08997 * 109.46988 * 300.00202 * 1 2 3 30 30 H 1.09002 * 109.46664 * 59.99686 * 1 2 3 31 31 H 1.09003 * 109.46865 * 179.97438 * 1 2 3 32 32 H 1.09008 * 109.47484 * 239.99908 * 2 1 3 33 33 H 1.09006 * 109.47123 * 120.00150 * 2 1 3 34 34 H 1.09007 * 109.47157 * 59.99983 * 3 2 1 35 35 H 1.09006 * 109.47086 * 300.00173 * 3 2 1 36 36 H 1.08997 * 109.46988 * 59.99798 * 4 3 2 37 37 H 1.09006 * 109.47123 * 300.00150 * 4 3 2 38 38 H 0.96990 * 120.00186 * 120.00062 * 7 5 4 39 39 H 0.96995 * 119.99487 * 0.02562 * 9 8 7 40 40 H 0.96992 * 119.99845 * 180.02562 * 9 8 7 41 41 H 0.97003 * 120.00165 * 359.97438 * 13 11 5 42 42 H 1.08997 * 109.46833 * 55.53835 * 14 13 11 43 43 H 1.09005 * 109.47165 * 295.53940 * 14 13 11 44 44 H 0.96999 * 119.99526 * 238.62385 * 16 15 14 45 45 H 0.96994 * 119.99783 * 179.97438 * 20 19 17 46 46 H 1.08995 * 110.75801 * 274.93614 * 25 15 14 47 47 H 1.09001 * 110.75426 * 38.30728 * 25 15 14 48 48 H 1.08994 * 110.48349 * 203.38368 * 26 25 15 49 49 H 1.08994 * 110.48252 * 80.73645 * 26 25 15 50 50 H 1.08993 * 110.03100 * 264.32044 * 27 26 25 51 51 H 1.09006 * 110.03030 * 142.89386 * 27 26 25 52 52 H 1.08998 * 110.03485 * 240.71240 * 28 27 26 53 53 H 1.08996 * 110.03357 * 119.27899 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5701 1.4425 0.0006 5 6 4.0801 2.8850 0.0013 6 1 3.6451 3.4237 0.8430 7 7 3.6930 3.5403 -1.2505 8 6 4.1181 3.0451 -2.4298 9 7 3.7616 3.6477 -3.5815 10 8 4.8224 2.0544 -2.4547 11 6 5.5820 2.8867 0.1258 12 8 6.2719 3.0399 -0.8598 13 7 6.1583 2.7180 1.3323 14 6 7.6183 2.7192 1.4533 15 6 8.0079 2.6220 2.9296 16 7 7.4356 1.4163 3.5339 17 6 7.7402 0.1832 3.0222 18 1 8.4823 0.0904 2.2430 19 6 7.0952 -0.9471 3.5047 20 7 6.1911 -0.8339 4.4547 21 14 7.5113 -2.6293 2.8071 22 1 8.5523 -2.4863 1.7578 23 1 8.0201 -3.5039 3.8940 24 1 6.2917 -3.2348 2.2144 25 6 9.5489 2.6272 3.0851 26 6 9.7443 3.1306 4.5369 27 6 8.6502 4.2036 4.7156 28 6 7.5462 3.8802 3.6937 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8934 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 1.6767 1.9563 0.8900 35 1 1.6767 1.9563 -0.8900 36 1 3.9337 0.9285 -0.8891 37 1 3.9330 0.9287 0.8909 38 1 3.1310 4.3304 -1.2307 39 1 3.1995 4.4379 -3.5616 40 1 4.0672 3.2911 -4.4302 41 1 5.6064 2.5957 2.1206 42 1 8.0170 3.6422 1.0323 43 1 8.0284 1.8662 0.9124 44 1 6.8409 1.4915 4.2965 45 1 5.7402 -1.6238 4.7916 46 1 9.9524 1.6215 2.9675 47 1 10.0067 3.3140 2.3732 48 1 10.7339 3.5711 4.6579 49 1 9.5989 2.3158 5.2460 50 1 9.0624 5.1933 4.5194 51 1 8.2468 4.1605 5.7273 52 1 7.4225 4.7130 3.0015 53 1 6.6071 3.6801 4.2094 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001482239240.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:13:19 Heat of formation + Delta-G solvation = -105.405210 kcal Electronic energy + Delta-G solvation = -31967.507542 eV Core-core repulsion = 27872.267322 eV Total energy + Delta-G solvation = -4095.240220 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.226 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.55718 -40.25259 -39.23598 -37.14416 -35.48136 -35.16763 -35.01999 -34.37538 -32.36197 -31.37017 -29.69406 -29.51116 -27.70239 -25.92479 -24.90502 -23.71357 -22.63054 -21.78205 -21.35200 -20.68596 -20.09527 -19.50689 -18.93671 -18.39535 -17.63595 -17.17403 -16.75805 -16.41186 -16.18513 -15.98245 -15.77659 -15.54639 -15.24664 -15.14033 -15.11593 -14.88344 -14.57783 -14.16596 -14.02669 -13.81815 -13.54233 -13.35278 -13.11595 -12.94805 -12.73708 -12.39229 -12.32540 -12.25681 -12.20674 -12.02175 -11.92084 -11.77482 -11.72534 -11.58646 -11.48580 -11.37271 -11.19879 -11.15339 -10.87900 -10.77197 -10.43573 -9.84347 -9.76374 -8.92051 -7.90605 -5.14463 1.39921 1.44761 1.50160 1.74790 1.96072 2.35982 2.55261 2.65618 3.41335 3.70067 3.78286 3.79074 3.86523 3.92842 3.99497 4.03698 4.15555 4.16756 4.27179 4.43406 4.49030 4.54872 4.63618 4.69022 4.79385 4.83206 4.86684 4.90004 4.99410 5.01778 5.02490 5.08129 5.16094 5.22318 5.23360 5.25335 5.31496 5.38414 5.42483 5.49591 5.51034 5.54133 5.62736 5.65902 5.75379 6.02516 6.14010 6.34230 6.78829 7.26665 7.42377 7.47005 7.91104 8.15167 8.41298 9.31605 Molecular weight = 340.23amu Principal moments of inertia in cm(-1) A = 0.008601 B = 0.004226 C = 0.003341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3254.747246 B = 6624.540288 C = 8377.955333 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.131 4.131 3 C -0.096 4.096 4 C -0.129 4.129 5 C 0.164 3.836 6 H 0.150 0.850 7 N -0.715 5.715 8 C 0.699 3.301 9 N -0.852 5.852 10 O -0.621 6.621 11 C 0.486 3.514 12 O -0.566 6.566 13 N -0.699 5.699 14 C 0.133 3.867 15 C 0.185 3.815 16 N -0.707 5.707 17 C -0.210 4.210 18 H 0.056 0.944 19 C -0.056 4.056 20 N -0.954 5.954 21 Si 0.939 3.061 22 H -0.283 1.283 23 H -0.292 1.292 24 H -0.300 1.300 25 C -0.133 4.133 26 C -0.109 4.109 27 C -0.112 4.112 28 C -0.114 4.114 29 H 0.064 0.936 30 H 0.062 0.938 31 H 0.052 0.948 32 H 0.042 0.958 33 H 0.047 0.953 34 H 0.084 0.916 35 H 0.071 0.929 36 H 0.053 0.947 37 H 0.057 0.943 38 H 0.419 0.581 39 H 0.412 0.588 40 H 0.415 0.585 41 H 0.406 0.594 42 H 0.062 0.938 43 H 0.017 0.983 44 H 0.378 0.622 45 H 0.248 0.752 46 H 0.041 0.959 47 H 0.072 0.928 48 H 0.074 0.926 49 H 0.043 0.957 50 H 0.081 0.919 51 H 0.063 0.937 52 H 0.081 0.919 53 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.780 16.478 -6.687 20.796 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.169 4.169 3 C -0.133 4.133 4 C -0.168 4.168 5 C 0.054 3.946 6 H 0.167 0.833 7 N -0.373 5.373 8 C 0.398 3.602 9 N -0.422 5.422 10 O -0.499 6.499 11 C 0.272 3.728 12 O -0.444 6.444 13 N -0.350 5.350 14 C 0.006 3.994 15 C 0.094 3.906 16 N -0.347 5.347 17 C -0.343 4.343 18 H 0.074 0.926 19 C -0.249 4.249 20 N -0.605 5.605 21 Si 0.772 3.228 22 H -0.209 1.209 23 H -0.219 1.219 24 H -0.227 1.227 25 C -0.173 4.173 26 C -0.147 4.147 27 C -0.150 4.150 28 C -0.152 4.152 29 H 0.083 0.917 30 H 0.081 0.919 31 H 0.071 0.929 32 H 0.061 0.939 33 H 0.066 0.934 34 H 0.103 0.897 35 H 0.090 0.910 36 H 0.071 0.929 37 H 0.076 0.924 38 H 0.257 0.743 39 H 0.243 0.757 40 H 0.247 0.753 41 H 0.242 0.758 42 H 0.080 0.920 43 H 0.036 0.964 44 H 0.212 0.788 45 H 0.057 0.943 46 H 0.060 0.940 47 H 0.091 0.909 48 H 0.092 0.908 49 H 0.062 0.938 50 H 0.099 0.901 51 H 0.082 0.918 52 H 0.099 0.901 53 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -9.642 15.639 -7.346 19.786 hybrid contribution -0.075 -1.426 -0.227 1.446 sum -9.716 14.213 -7.573 18.808 Atomic orbital electron populations 1.21709 0.93997 1.01869 1.02491 1.21546 0.97294 0.97276 1.00805 1.21445 0.92021 0.96731 1.03127 1.21876 0.98006 0.94656 1.02288 1.20686 0.89673 0.96059 0.88182 0.83255 1.44429 1.56233 1.33645 1.02979 1.16213 0.79278 0.82806 0.81951 1.42728 1.58382 1.34597 1.06530 1.90973 1.42614 1.29652 1.86708 1.21573 0.92237 0.76292 0.82736 1.90684 1.65782 1.50216 1.37714 1.45712 1.07612 1.72296 1.09360 1.21561 0.80724 0.98751 0.98355 1.20850 0.92772 0.87482 0.89500 1.42393 1.56015 1.00203 1.36084 1.19175 1.15154 0.85557 1.14381 0.92645 1.25065 0.99842 0.99611 1.00380 1.69731 1.30557 1.28304 1.31905 0.85579 0.76816 0.82984 0.77464 1.20871 1.21942 1.22748 1.22873 0.96732 1.00004 0.97697 1.22153 0.99042 0.97898 0.95605 1.22047 0.95273 0.98831 0.98834 1.22311 0.99069 0.95860 0.97940 0.91674 0.91936 0.92919 0.93925 0.93393 0.89725 0.91005 0.92871 0.92404 0.74316 0.75724 0.75284 0.75840 0.91968 0.96435 0.78819 0.94293 0.93966 0.90914 0.90770 0.93814 0.90084 0.91836 0.90072 0.91520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.65 9.91 71.98 0.71 -1.93 16 2 C -0.13 -3.22 5.93 30.59 0.18 -3.03 16 3 C -0.10 -2.10 5.10 30.59 0.16 -1.94 16 4 C -0.13 -3.91 4.54 30.59 0.14 -3.77 16 5 C 0.16 4.27 3.01 44.24 0.13 4.40 16 6 H 0.15 2.53 8.14 -2.39 -0.02 2.51 16 7 N -0.71 -15.31 4.66 -461.41 -2.15 -17.46 16 8 C 0.70 19.92 7.59 179.05 1.36 21.28 16 9 N -0.85 -14.88 8.88 -184.74 -1.64 -16.52 16 10 O -0.62 -26.05 13.03 18.49 0.24 -25.81 16 11 C 0.49 17.67 6.82 87.66 0.60 18.27 16 12 O -0.57 -25.54 13.68 19.44 0.27 -25.27 16 13 N -0.70 -24.77 5.24 -463.06 -2.43 -27.19 16 14 C 0.13 5.11 4.29 86.38 0.37 5.48 16 15 C 0.18 6.64 0.52 4.68 0.00 6.65 16 16 N -0.71 -31.80 4.70 -298.49 -1.40 -33.20 16 17 C -0.21 -11.20 8.59 84.03 0.72 -10.48 16 18 H 0.06 3.08 7.13 -2.91 -0.02 3.06 16 19 C -0.06 -3.13 5.50 84.86 0.47 -2.66 16 20 N -0.95 -55.18 13.07 21.65 0.28 -54.90 16 21 Si 0.94 47.62 29.55 68.60 2.03 49.64 16 22 H -0.28 -14.29 7.11 99.48 0.71 -13.58 16 23 H -0.29 -14.64 7.11 99.48 0.71 -13.93 16 24 H -0.30 -15.45 7.11 99.48 0.71 -14.75 16 25 C -0.13 -4.59 5.90 31.89 0.19 -4.40 16 26 C -0.11 -3.25 6.79 31.67 0.22 -3.04 16 27 C -0.11 -2.82 6.80 31.32 0.21 -2.60 16 28 C -0.11 -3.16 5.70 31.32 0.18 -2.98 16 29 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 30 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 31 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 32 H 0.04 1.16 8.14 -2.38 -0.02 1.14 16 33 H 0.05 1.33 8.14 -2.38 -0.02 1.31 16 34 H 0.08 1.48 8.14 -2.38 -0.02 1.46 16 35 H 0.07 1.39 7.75 -2.38 -0.02 1.37 16 36 H 0.05 2.07 6.04 -2.39 -0.01 2.05 16 37 H 0.06 2.02 8.14 -2.38 -0.02 2.00 16 38 H 0.42 4.85 8.84 -92.72 -0.82 4.03 16 39 H 0.41 3.54 8.84 -92.71 -0.82 2.72 16 40 H 0.42 7.00 8.93 -92.71 -0.83 6.17 16 41 H 0.41 13.53 8.07 -92.71 -0.75 12.78 16 42 H 0.06 2.24 8.08 -2.39 -0.02 2.22 16 43 H 0.02 0.82 7.52 -2.38 -0.02 0.80 16 44 H 0.38 18.03 7.50 -92.71 -0.69 17.34 16 45 H 0.25 14.18 8.31 -92.71 -0.77 13.41 16 46 H 0.04 1.71 7.20 -2.39 -0.02 1.69 16 47 H 0.07 2.21 8.06 -2.39 -0.02 2.19 16 48 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 49 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 50 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 51 H 0.06 1.55 8.14 -2.38 -0.02 1.53 16 52 H 0.08 1.97 7.80 -2.39 -0.02 1.95 16 53 H 0.07 1.86 7.76 -2.39 -0.02 1.84 16 Total: -1.00 -80.12 416.65 -2.12 -82.24 By element: Atomic # 1 Polarization: 52.20 SS G_CDS: -2.96 Total: 49.24 kcal Atomic # 6 Polarization: 13.59 SS G_CDS: 5.64 Total: 19.23 kcal Atomic # 7 Polarization: -141.94 SS G_CDS: -7.34 Total: -149.28 kcal Atomic # 8 Polarization: -51.58 SS G_CDS: 0.51 Total: -51.08 kcal Atomic # 14 Polarization: 47.62 SS G_CDS: 2.03 Total: 49.64 kcal Total: -80.12 -2.12 -82.24 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482239240.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.164 kcal (2) G-P(sol) polarization free energy of solvation -80.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.281 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.124 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.242 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds