Wall clock time and date at job start Sat Apr 11 2020 06:11:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53003 * 109.47158 * 2 1 4 4 C 1.52998 * 109.47418 * 120.00641 * 2 1 3 5 5 H 1.09003 * 109.47051 * 187.19374 * 4 2 1 6 6 C 1.50690 * 109.47285 * 67.18885 * 4 2 1 7 7 O 1.21287 * 120.00412 * 278.32350 * 6 4 2 8 8 N 1.34776 * 120.00241 * 98.32167 * 6 4 2 9 9 C 1.46494 * 119.99742 * 359.97438 * 8 6 4 10 10 C 1.46502 * 120.00173 * 179.97438 * 8 6 4 11 11 C 1.53517 * 114.16773 * 120.00161 * 10 8 6 12 12 N 1.47483 * 87.93002 * 87.62443 * 11 10 8 13 13 C 1.46902 * 110.99870 * 138.70764 * 12 11 10 14 14 C 1.50701 * 109.47256 * 169.99707 * 13 12 11 15 15 O 1.21295 * 119.99802 * 359.97438 * 14 13 12 16 16 N 1.34770 * 120.00314 * 179.97438 * 14 13 12 17 17 C 1.37099 * 120.00253 * 179.97438 * 16 14 13 18 18 H 1.08000 * 119.99703 * 0.02562 * 17 16 14 19 19 C 1.38949 * 120.00048 * 180.02562 * 17 16 14 20 20 N 1.31411 * 120.00054 * 359.97438 * 19 17 16 21 21 Si 1.86799 * 120.00063 * 180.02562 * 19 17 16 22 22 H 1.48506 * 109.46756 * 59.99896 * 21 19 17 23 23 H 1.48495 * 109.47298 * 179.97438 * 21 19 17 24 24 H 1.48502 * 109.47087 * 300.00302 * 21 19 17 25 25 C 1.47478 * 87.84111 * 27.00882 * 12 11 10 26 26 N 1.46902 * 109.46896 * 307.18882 * 4 2 1 27 27 C 1.46897 * 111.00155 * 156.74657 * 26 4 2 28 28 C 1.46902 * 110.99917 * 280.70534 * 26 4 2 29 29 H 1.08994 * 109.46851 * 295.03335 * 1 2 3 30 30 H 1.09004 * 109.46836 * 55.03827 * 1 2 3 31 31 H 1.08998 * 109.46572 * 175.03358 * 1 2 3 32 32 H 1.09004 * 109.47032 * 240.00608 * 2 1 3 33 33 H 1.09000 * 109.46743 * 156.94343 * 3 2 1 34 34 H 1.08998 * 109.47287 * 276.94280 * 3 2 1 35 35 H 1.09003 * 109.46655 * 36.94302 * 3 2 1 36 36 H 1.09004 * 109.47381 * 269.99998 * 9 8 6 37 37 H 1.09006 * 109.47422 * 30.00068 * 9 8 6 38 38 H 1.09009 * 109.47601 * 149.99925 * 9 8 6 39 39 H 1.08997 * 113.38799 * 346.92248 * 10 8 6 40 40 H 1.08993 * 113.47660 * 332.85671 * 11 10 8 41 41 H 1.09003 * 113.47171 * 202.38724 * 11 10 8 42 42 H 1.08998 * 109.47702 * 49.99059 * 13 12 11 43 43 H 1.09003 * 109.46807 * 289.99180 * 13 12 11 44 44 H 0.97004 * 119.99644 * 0.02562 * 16 14 13 45 45 H 0.97004 * 120.00092 * 179.97438 * 20 19 17 46 46 H 1.08999 * 113.47432 * 87.75285 * 25 12 11 47 47 H 1.08997 * 113.47569 * 218.22701 * 25 12 11 48 48 H 1.09000 * 109.46474 * 52.12049 * 27 26 4 49 49 H 1.09000 * 109.47121 * 172.11562 * 27 26 4 50 50 H 1.08997 * 109.47358 * 292.11774 * 27 26 4 51 51 H 1.09007 * 109.47089 * 73.76278 * 28 26 4 52 52 H 1.09006 * 109.46744 * 193.75547 * 28 26 4 53 53 H 1.08998 * 109.47135 * 313.75932 * 28 26 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7214 1.2491 5 1 3.1225 -0.6112 1.3158 6 6 1.6883 -2.1841 1.1633 7 8 0.5772 -2.5598 1.4722 8 7 2.6083 -3.0750 0.7434 9 6 3.9501 -2.6213 0.3698 10 6 2.2664 -4.4972 0.6606 11 6 2.3948 -5.0934 -0.7483 12 7 3.8107 -5.3717 -0.4433 13 6 4.2086 -6.6920 -0.9497 14 6 5.7044 -6.8414 -0.8424 15 8 6.3732 -5.9366 -0.3893 16 7 6.2989 -7.9801 -1.2501 17 6 7.6597 -8.1157 -1.1530 18 1 8.2552 -7.3101 -0.7495 19 6 8.2727 -9.2895 -1.5737 20 7 7.5480 -10.2699 -2.0642 21 14 10.1267 -9.4746 -1.4408 22 1 10.5364 -9.3455 -0.0192 23 1 10.5289 -10.8095 -1.9521 24 1 10.7888 -8.4160 -2.2448 25 6 3.4322 -5.4436 0.9802 26 7 1.4141 -0.1363 2.4423 27 6 1.4184 -1.0894 3.5601 28 6 2.0734 1.1210 2.8199 29 1 -0.3633 0.4348 0.9311 30 1 -0.3633 0.5889 -0.8422 31 1 -0.3632 -1.0238 -0.0890 32 1 1.8934 -0.5138 -0.8901 33 1 3.0527 1.4698 0.4025 34 1 2.0441 1.8265 -1.0201 35 1 1.3867 2.0588 0.6177 36 1 3.9684 -2.3766 -0.6923 37 1 4.2094 -1.7363 0.9510 38 1 4.6712 -3.4132 0.5727 39 1 1.3353 -4.7487 1.1684 40 1 2.2578 -4.3612 -1.5438 41 1 1.7973 -5.9932 -0.8950 42 1 3.9078 -6.7869 -1.9930 43 1 3.7227 -7.4690 -0.3594 44 1 5.7640 -8.7035 -1.6128 45 1 7.9760 -11.0893 -2.3583 46 1 3.1114 -6.4367 1.2946 47 1 4.1741 -5.0079 1.6493 48 1 2.4295 -1.4676 3.7110 49 1 1.0790 -0.5880 4.4665 50 1 0.7501 -1.9198 3.3322 51 1 1.7906 1.9049 2.1172 52 1 1.7639 1.4057 3.8256 53 1 3.1546 0.9853 2.7971 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001483888986.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:14 Heat of formation + Delta-G solvation = -19.675866 kcal Electronic energy + Delta-G solvation = -31263.228571 eV Core-core repulsion = 27171.705854 eV Total energy + Delta-G solvation = -4091.522717 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.226 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.17786 -40.96864 -39.64243 -38.15242 -36.10837 -35.81487 -35.04113 -33.27833 -31.59435 -29.45526 -28.44693 -28.14502 -27.49473 -27.22908 -26.81954 -25.13232 -23.66354 -22.21245 -21.09060 -20.63738 -19.91730 -19.50224 -18.53760 -17.79826 -17.49281 -16.94387 -16.86734 -16.58644 -16.41947 -16.35813 -15.67302 -15.53095 -15.34812 -14.83381 -14.72976 -14.61203 -14.46784 -14.27483 -13.71581 -13.68457 -13.59742 -13.49580 -13.39515 -13.19852 -13.15119 -13.08362 -12.95462 -12.63983 -12.53675 -12.43876 -12.27163 -12.18516 -12.07422 -12.04704 -11.91076 -11.67386 -11.48194 -11.25874 -10.61502 -10.35740 -10.00155 -9.75282 -9.64613 -9.27090 -8.46073 -5.94548 1.39257 1.40924 1.45913 1.51661 1.80939 2.07661 2.28349 2.80332 2.94603 3.20291 3.34877 3.36716 3.50369 3.76082 3.82702 3.87178 4.14133 4.19772 4.24746 4.27028 4.32394 4.38587 4.41251 4.42261 4.45911 4.52665 4.58175 4.61867 4.64732 4.70496 4.76697 4.79953 4.81698 4.90123 4.96135 5.05853 5.09242 5.09863 5.15851 5.28188 5.29536 5.40854 5.49250 5.50349 5.60660 5.83621 5.90590 6.05203 6.06830 6.38095 6.61546 7.11045 7.13913 7.58220 8.14261 8.71176 Molecular weight = 340.23amu Principal moments of inertia in cm(-1) A = 0.022307 B = 0.002154 C = 0.002103 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1254.897051 B =12997.161836 C =13310.942632 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.077 4.077 3 C -0.143 4.143 4 C 0.072 3.928 5 H 0.076 0.924 6 C 0.517 3.483 7 O -0.552 6.552 8 N -0.587 5.587 9 C 0.083 3.917 10 C 0.122 3.878 11 C -0.006 4.006 12 N -0.460 5.460 13 C 0.020 3.980 14 C 0.445 3.555 15 O -0.615 6.615 16 N -0.578 5.578 17 C -0.331 4.331 18 H 0.078 0.922 19 C -0.014 4.014 20 N -0.922 5.922 21 Si 0.991 3.009 22 H -0.272 1.272 23 H -0.271 1.271 24 H -0.272 1.272 25 C -0.005 4.005 26 N -0.527 5.527 27 C 0.012 3.988 28 C 0.009 3.991 29 H 0.066 0.934 30 H 0.057 0.943 31 H 0.031 0.969 32 H 0.069 0.931 33 H 0.061 0.939 34 H 0.064 0.936 35 H 0.073 0.927 36 H 0.061 0.939 37 H 0.080 0.920 38 H 0.074 0.926 39 H 0.116 0.884 40 H 0.087 0.913 41 H 0.101 0.899 42 H 0.107 0.893 43 H 0.085 0.915 44 H 0.395 0.605 45 H 0.277 0.723 46 H 0.094 0.906 47 H 0.072 0.928 48 H 0.016 0.984 49 H 0.081 0.919 50 H 0.070 0.930 51 H 0.095 0.905 52 H 0.075 0.925 53 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.333 19.234 5.676 24.650 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.096 4.096 3 C -0.200 4.200 4 C -0.039 4.039 5 H 0.094 0.906 6 C 0.306 3.694 7 O -0.430 6.430 8 N -0.319 5.319 9 C -0.059 4.059 10 C 0.016 3.984 11 C -0.136 4.136 12 N -0.183 5.183 13 C -0.112 4.112 14 C 0.232 3.768 15 O -0.501 6.501 16 N -0.216 5.216 17 C -0.461 4.461 18 H 0.096 0.904 19 C -0.214 4.214 20 N -0.563 5.563 21 Si 0.815 3.185 22 H -0.197 1.197 23 H -0.196 1.196 24 H -0.197 1.197 25 C -0.135 4.135 26 N -0.252 5.252 27 C -0.136 4.136 28 C -0.138 4.138 29 H 0.085 0.915 30 H 0.076 0.924 31 H 0.051 0.949 32 H 0.088 0.912 33 H 0.080 0.920 34 H 0.083 0.917 35 H 0.091 0.909 36 H 0.080 0.920 37 H 0.099 0.901 38 H 0.093 0.907 39 H 0.134 0.866 40 H 0.106 0.894 41 H 0.119 0.881 42 H 0.125 0.875 43 H 0.102 0.898 44 H 0.229 0.771 45 H 0.086 0.914 46 H 0.112 0.888 47 H 0.090 0.910 48 H 0.035 0.965 49 H 0.099 0.901 50 H 0.088 0.912 51 H 0.113 0.887 52 H 0.094 0.906 53 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -14.338 19.985 5.710 25.251 hybrid contribution 1.215 -1.912 0.159 2.270 sum -13.124 18.074 5.869 23.094 Atomic orbital electron populations 1.21642 0.94183 1.00792 1.02117 1.21006 0.97186 0.97268 0.94153 1.22077 1.01161 0.94096 1.02680 1.22052 0.98263 0.89375 0.94257 0.90610 1.20858 0.84121 0.88474 0.75911 1.90624 1.22257 1.80774 1.49358 1.47564 1.13436 1.06045 1.64852 1.21911 0.82444 1.00856 1.00736 1.21973 0.98415 0.80637 0.97326 1.24350 0.89471 1.01540 0.98206 1.68836 1.18881 1.24953 1.05612 1.22398 0.92339 0.93048 1.03384 1.20734 0.90835 0.82698 0.82528 1.90474 1.66920 1.41793 1.50894 1.41957 1.07516 1.15524 1.56557 1.19595 0.83711 1.01700 1.41059 0.90392 1.26017 1.04683 0.94555 0.96111 1.69665 1.37947 1.06281 1.42392 0.85015 0.77068 0.77700 0.78728 1.19741 1.19578 1.19712 1.24308 0.96701 0.99943 0.92518 1.61861 1.54437 1.05348 1.03596 1.22675 0.99658 0.97318 0.93967 1.22973 0.96557 0.91530 1.02764 0.91495 0.92363 0.94933 0.91213 0.92012 0.91726 0.90852 0.92034 0.90126 0.90713 0.86629 0.89446 0.88101 0.87510 0.89753 0.77107 0.91372 0.88817 0.90950 0.96546 0.90053 0.91188 0.88687 0.90646 0.94988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.49 8.53 71.98 0.61 -1.87 16 2 C -0.08 -1.29 2.72 -10.79 -0.03 -1.32 16 3 C -0.14 -1.69 7.83 71.98 0.56 -1.13 16 4 C 0.07 1.37 1.48 44.16 0.07 1.43 16 5 H 0.08 1.31 4.93 -2.39 -0.01 1.30 16 6 C 0.52 12.53 5.19 87.65 0.46 12.99 16 7 O -0.55 -16.30 12.78 -3.05 -0.04 -16.34 16 8 N -0.59 -13.95 3.11 -821.57 -2.56 -16.51 16 9 C 0.08 1.91 9.34 127.77 1.19 3.10 16 10 C 0.12 2.89 4.66 45.45 0.21 3.10 16 11 C -0.01 -0.14 7.31 83.59 0.61 0.48 16 12 N -0.46 -13.76 4.40 -932.38 -4.10 -17.86 16 13 C 0.02 0.65 5.30 85.56 0.45 1.11 16 14 C 0.44 20.72 7.85 87.66 0.69 21.41 16 15 O -0.62 -33.37 16.01 -3.08 -0.05 -33.42 16 16 N -0.58 -29.32 5.29 -306.99 -1.62 -30.94 16 17 C -0.33 -18.67 9.68 84.04 0.81 -17.86 16 18 H 0.08 4.68 7.16 -2.91 -0.02 4.66 16 19 C -0.01 -0.75 5.50 84.93 0.47 -0.29 16 20 N -0.92 -49.61 13.05 21.66 0.28 -49.32 16 21 Si 0.99 42.76 29.55 68.60 2.03 44.79 16 22 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 23 H -0.27 -11.04 7.11 99.48 0.71 -10.34 16 24 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 25 C 0.00 -0.13 6.73 83.59 0.56 0.43 16 26 N -0.53 -9.73 3.61 -927.73 -3.35 -13.08 16 27 C 0.01 0.24 8.64 127.69 1.10 1.34 16 28 C 0.01 0.11 8.67 127.69 1.11 1.22 16 29 H 0.07 1.36 7.25 -2.39 -0.02 1.34 16 30 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 31 H 0.03 0.78 6.81 -2.39 -0.02 0.76 16 32 H 0.07 1.23 8.13 -2.39 -0.02 1.21 16 33 H 0.06 0.65 7.37 -2.39 -0.02 0.63 16 34 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 35 H 0.07 0.79 5.86 -2.39 -0.01 0.78 16 36 H 0.06 1.39 8.14 -2.38 -0.02 1.37 16 37 H 0.08 1.50 5.71 -2.38 -0.01 1.48 16 38 H 0.07 2.19 5.68 -2.38 -0.01 2.17 16 39 H 0.12 2.72 7.29 -2.39 -0.02 2.70 16 40 H 0.09 2.01 8.14 -2.39 -0.02 1.99 16 41 H 0.10 1.86 7.91 -2.39 -0.02 1.84 16 42 H 0.11 3.11 8.08 -2.39 -0.02 3.09 16 43 H 0.08 2.37 7.30 -2.39 -0.02 2.35 16 44 H 0.40 19.05 7.90 -92.71 -0.73 18.32 16 45 H 0.28 14.01 8.31 -92.71 -0.77 13.24 16 46 H 0.09 2.22 7.42 -2.39 -0.02 2.21 16 47 H 0.07 2.21 7.25 -2.39 -0.02 2.19 16 48 H 0.02 0.33 8.10 -2.39 -0.02 0.31 16 49 H 0.08 1.34 7.80 -2.39 -0.02 1.32 16 50 H 0.07 1.77 5.60 -2.39 -0.01 1.76 16 51 H 0.09 1.00 4.71 -2.38 -0.01 0.99 16 52 H 0.07 0.84 7.75 -2.38 -0.02 0.82 16 53 H 0.03 0.39 7.74 -2.39 -0.02 0.37 16 Total: -1.00 -69.52 403.18 -0.34 -69.86 By element: Atomic # 1 Polarization: 38.50 SS G_CDS: 0.19 Total: 38.69 kcal Atomic # 6 Polarization: 15.25 SS G_CDS: 8.88 Total: 24.13 kcal Atomic # 7 Polarization: -116.36 SS G_CDS: -11.35 Total: -127.71 kcal Atomic # 8 Polarization: -49.67 SS G_CDS: -0.09 Total: -49.76 kcal Atomic # 14 Polarization: 42.76 SS G_CDS: 2.03 Total: 44.79 kcal Total: -69.52 -0.34 -69.86 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001483888986.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.187 kcal (2) G-P(sol) polarization free energy of solvation -69.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.341 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.863 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.676 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds