Wall clock time and date at job start Sat Apr 11 2020 06:11:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.46793 * 2 1 4 4 H 1.08997 * 109.46929 * 306.37207 * 3 2 1 5 5 C 1.50703 * 109.46557 * 186.37855 * 3 2 1 6 6 O 1.21280 * 119.99765 * 262.02401 * 5 3 2 7 7 N 1.34778 * 120.00012 * 82.03079 * 5 3 2 8 8 C 1.47420 * 125.64790 * 4.32567 * 7 5 3 9 9 C 1.54919 * 104.83024 * 204.17629 * 8 7 5 10 10 C 1.55157 * 101.57761 * 322.98958 * 9 8 7 11 11 C 1.47026 * 125.64332 * 184.37906 * 7 5 3 12 12 H 1.08995 * 109.88472 * 59.47918 * 11 7 5 13 13 C 1.52999 * 109.88371 * 298.30852 * 11 7 5 14 14 N 1.46900 * 109.47193 * 181.91008 * 13 11 7 15 15 C 1.46896 * 110.99844 * 184.34903 * 14 13 11 16 16 C 1.50702 * 109.47086 * 179.97438 * 15 14 13 17 17 O 1.21296 * 119.99790 * 0.02562 * 16 15 14 18 18 N 1.34773 * 120.00355 * 179.97438 * 16 15 14 19 19 C 1.37096 * 120.00180 * 180.02562 * 18 16 15 20 20 H 1.07997 * 119.99991 * 359.97438 * 19 18 16 21 21 C 1.38956 * 120.00058 * 180.02562 * 19 18 16 22 22 N 1.31407 * 119.99894 * 179.97438 * 21 19 18 23 23 Si 1.86796 * 119.99842 * 359.97438 * 21 19 18 24 24 H 1.48497 * 109.47225 * 90.00038 * 23 21 19 25 25 H 1.48497 * 109.47366 * 209.99992 * 23 21 19 26 26 H 1.48499 * 109.47337 * 330.00339 * 23 21 19 27 27 N 1.46900 * 109.47568 * 66.37944 * 3 2 1 28 28 C 1.46901 * 110.99739 * 280.92924 * 27 3 2 29 29 C 1.46896 * 110.99919 * 44.87783 * 27 3 2 30 30 H 1.09004 * 109.47187 * 291.67070 * 1 2 3 31 31 H 1.08999 * 109.47441 * 51.66526 * 1 2 3 32 32 H 1.08997 * 109.46949 * 171.66886 * 1 2 3 33 33 H 1.08996 * 109.47082 * 239.99811 * 2 1 3 34 34 H 1.08998 * 109.46625 * 119.99434 * 2 1 3 35 35 H 1.08994 * 110.36993 * 85.33686 * 8 7 5 36 36 H 1.09003 * 110.46102 * 323.05409 * 8 7 5 37 37 H 1.08996 * 111.00413 * 204.91835 * 9 8 7 38 38 H 1.08998 * 111.00351 * 81.05977 * 9 8 7 39 39 H 1.09001 * 110.71981 * 277.14019 * 10 9 8 40 40 H 1.09002 * 110.72013 * 153.86722 * 10 9 8 41 41 H 1.09000 * 109.47091 * 301.90731 * 13 11 7 42 42 H 1.08993 * 109.47243 * 61.90412 * 13 11 7 43 43 H 1.00903 * 110.99745 * 308.29876 * 14 13 11 44 44 H 1.09003 * 109.47319 * 299.99233 * 15 14 13 45 45 H 1.08997 * 109.47488 * 59.99698 * 15 14 13 46 46 H 0.97003 * 119.99539 * 359.97438 * 18 16 15 47 47 H 0.97000 * 119.99726 * 179.97438 * 22 21 19 48 48 H 1.08998 * 109.47077 * 95.09326 * 28 27 3 49 49 H 1.08999 * 109.47259 * 215.09271 * 28 27 3 50 50 H 1.09000 * 109.46853 * 335.09406 * 28 27 3 51 51 H 1.09006 * 109.47076 * 60.00496 * 29 27 3 52 52 H 1.08998 * 109.47402 * 179.97438 * 29 27 3 53 53 H 1.09003 * 109.47520 * 300.00536 * 29 27 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5864 1.9882 -0.8274 5 6 3.5387 1.4454 -0.1579 6 8 4.2509 1.5537 0.8178 7 7 4.0875 1.3278 -1.3832 8 6 3.3452 1.2799 -2.6560 9 6 4.2889 0.5413 -3.6378 10 6 5.6767 1.0802 -3.2007 11 6 5.5255 1.2249 -1.6717 12 1 5.9418 0.3494 -1.1735 13 6 6.2435 2.4891 -1.1951 14 7 7.6712 2.3965 -1.5286 15 6 8.4122 3.5470 -0.9947 16 6 9.8696 3.4171 -1.3553 17 8 10.2532 2.4604 -1.9947 18 7 10.7467 4.3644 -0.9684 19 6 12.0724 4.2465 -1.2969 20 1 12.4141 3.3942 -1.8654 21 6 12.9768 5.2230 -0.8975 22 7 14.2476 5.1096 -1.2120 23 14 12.3859 6.6967 0.0865 24 1 12.4611 6.3861 1.5366 25 1 13.2460 7.8694 -0.2137 26 1 10.9808 7.0063 -0.2811 27 7 1.6800 2.0893 1.2689 28 6 0.2733 2.5126 1.2635 29 6 1.9591 1.2050 2.4082 30 1 -0.3634 0.3795 0.9551 31 1 -0.3634 0.6374 -0.8061 32 1 -0.3633 -1.0168 -0.1489 33 1 1.8933 -0.5138 -0.8899 34 1 1.8932 -0.5137 0.8900 35 1 3.1400 2.2888 -3.0137 36 1 2.4151 0.7248 -2.5341 37 1 4.0709 0.8152 -4.6700 38 1 4.2282 -0.5383 -3.5005 39 1 5.8774 2.0474 -3.6616 40 1 6.4624 0.3651 -3.4445 41 1 5.8112 3.3601 -1.6876 42 1 6.1282 2.5874 -0.1158 43 1 8.0642 1.5281 -1.1976 44 1 8.0124 4.4667 -1.4221 45 1 8.3077 3.5750 0.0899 46 1 10.4397 5.1301 -0.4581 47 1 14.8788 5.7914 -0.9334 48 1 -0.3397 1.7424 1.7315 49 1 0.1723 3.4449 1.8192 50 1 -0.0563 2.6648 0.2357 51 1 3.0218 0.9630 2.4285 52 1 1.6839 1.7085 3.3349 53 1 1.3794 0.2875 2.3067 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001483934492.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:17 Heat of formation + Delta-G solvation = -70.008897 kcal Electronic energy + Delta-G solvation = -30647.770091 eV Core-core repulsion = 26554.064770 eV Total energy + Delta-G solvation = -4093.705321 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.226 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.63051 -40.35307 -39.54772 -37.94884 -36.66603 -35.85207 -33.77806 -33.52852 -32.38924 -31.41726 -29.27687 -28.55502 -28.28653 -26.29120 -24.91466 -23.89355 -23.59017 -22.45608 -21.45268 -21.26036 -20.38995 -19.76532 -18.38421 -17.94038 -17.43348 -17.05379 -17.00979 -16.67929 -16.17631 -16.06163 -15.68751 -15.50870 -15.35246 -15.00177 -14.94897 -14.87894 -14.38872 -14.14882 -14.03936 -13.80720 -13.77082 -13.50116 -13.34313 -13.27166 -13.17795 -12.91929 -12.91586 -12.70246 -12.58094 -12.45034 -12.43377 -12.28534 -12.00116 -11.98409 -11.81315 -11.67454 -11.55727 -11.53995 -10.65490 -10.48590 -10.27264 -9.67922 -9.42849 -9.16182 -8.43264 -6.03960 1.28996 1.33453 1.42439 1.59282 1.82925 1.91255 2.20921 2.69626 3.06154 3.12652 3.33990 3.49915 3.69682 3.79947 3.83486 3.90377 3.91914 4.10750 4.23113 4.26973 4.28786 4.34288 4.38012 4.39752 4.43853 4.47391 4.50871 4.63732 4.65781 4.70353 4.75071 4.78598 4.86217 4.98992 5.03818 5.05772 5.06545 5.13025 5.14237 5.19802 5.35298 5.37158 5.45186 5.50549 5.82850 5.95179 5.97899 6.10038 6.25116 6.56574 6.57042 6.84962 7.20439 7.36399 7.91788 8.74175 Molecular weight = 340.23amu Principal moments of inertia in cm(-1) A = 0.017218 B = 0.002180 C = 0.002000 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1625.829933 B =12842.726186 C =13995.568422 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.149 4.149 3 C 0.078 3.922 4 H 0.121 0.879 5 C 0.527 3.473 6 O -0.568 6.568 7 N -0.613 5.613 8 C 0.094 3.906 9 C -0.125 4.125 10 C -0.112 4.112 11 C 0.141 3.859 12 H 0.056 0.944 13 C 0.061 3.939 14 N -0.669 5.669 15 C 0.062 3.938 16 C 0.452 3.548 17 O -0.610 6.610 18 N -0.591 5.591 19 C -0.328 4.328 20 H 0.058 0.942 21 C -0.014 4.014 22 N -0.932 5.932 23 Si 0.963 3.037 24 H -0.259 1.259 25 H -0.272 1.272 26 H -0.234 1.234 27 N -0.547 5.547 28 C 0.020 3.980 29 C 0.020 3.980 30 H 0.063 0.937 31 H 0.073 0.927 32 H 0.065 0.935 33 H 0.080 0.920 34 H 0.061 0.939 35 H 0.082 0.918 36 H 0.101 0.899 37 H 0.106 0.894 38 H 0.080 0.920 39 H 0.077 0.923 40 H 0.076 0.924 41 H 0.076 0.924 42 H 0.025 0.975 43 H 0.342 0.658 44 H 0.113 0.887 45 H 0.065 0.935 46 H 0.389 0.611 47 H 0.280 0.720 48 H 0.055 0.945 49 H 0.064 0.936 50 H 0.079 0.921 51 H 0.058 0.942 52 H 0.068 0.932 53 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -37.620 -6.492 0.790 38.184 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.188 4.188 3 C -0.034 4.034 4 H 0.139 0.861 5 C 0.316 3.684 6 O -0.446 6.446 7 N -0.347 5.347 8 C -0.028 4.028 9 C -0.163 4.163 10 C -0.150 4.150 11 C 0.037 3.963 12 H 0.074 0.926 13 C -0.068 4.068 14 N -0.301 5.301 15 C -0.070 4.070 16 C 0.239 3.761 17 O -0.494 6.494 18 N -0.232 5.232 19 C -0.458 4.458 20 H 0.076 0.924 21 C -0.213 4.213 22 N -0.572 5.572 23 Si 0.783 3.217 24 H -0.183 1.183 25 H -0.197 1.197 26 H -0.157 1.157 27 N -0.271 5.271 28 C -0.127 4.127 29 C -0.128 4.128 30 H 0.082 0.918 31 H 0.092 0.908 32 H 0.084 0.916 33 H 0.099 0.901 34 H 0.080 0.920 35 H 0.101 0.899 36 H 0.119 0.881 37 H 0.124 0.876 38 H 0.099 0.901 39 H 0.096 0.904 40 H 0.094 0.906 41 H 0.095 0.905 42 H 0.043 0.957 43 H 0.160 0.840 44 H 0.131 0.869 45 H 0.083 0.917 46 H 0.224 0.776 47 H 0.089 0.911 48 H 0.073 0.927 49 H 0.083 0.917 50 H 0.098 0.902 51 H 0.077 0.923 52 H 0.087 0.913 53 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -36.626 -6.281 0.395 37.162 hybrid contribution 0.564 -0.109 1.546 1.649 sum -36.062 -6.390 1.942 36.675 Atomic orbital electron populations 1.22073 0.92954 1.03131 1.03114 1.22107 0.98405 0.94887 1.03404 1.21818 0.90164 0.96637 0.94753 0.86082 1.20880 0.91354 0.74941 0.81181 1.90649 1.64374 1.50402 1.39151 1.48664 1.06944 1.72485 1.06637 1.22658 0.96159 1.02008 0.81962 1.22828 0.92817 1.00543 1.00128 1.22513 0.98498 1.02746 0.91249 1.21423 0.81088 0.96016 0.97763 0.92595 1.22217 0.87360 0.98933 0.98335 1.60103 1.01857 1.04498 1.63646 1.21602 0.89438 0.96899 0.99081 1.20794 0.88690 0.83577 0.83003 1.90533 1.80609 1.34204 1.44058 1.42037 1.07162 1.22790 1.51241 1.19018 0.83122 1.09050 1.34573 0.92408 1.26092 0.94840 1.01690 0.98669 1.69794 1.03514 1.36945 1.46964 0.85385 0.80103 0.77274 0.78916 1.18343 1.19656 1.15736 1.61794 1.22526 1.41198 1.01608 1.22775 0.86018 1.00706 1.03176 1.22565 1.01840 0.95192 0.93154 0.91789 0.90823 0.91596 0.90123 0.92003 0.89938 0.88058 0.87583 0.90133 0.90431 0.90558 0.90544 0.95696 0.83968 0.86922 0.91678 0.77574 0.91074 0.92700 0.91698 0.90224 0.92338 0.91334 0.93727 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.94 8.54 71.98 0.61 -0.33 16 2 C -0.15 -1.59 4.74 30.60 0.14 -1.45 16 3 C 0.08 1.13 1.58 44.17 0.07 1.20 16 4 H 0.12 1.20 6.78 -2.39 -0.02 1.18 16 5 C 0.53 11.76 6.85 87.66 0.60 12.36 16 6 O -0.57 -17.94 13.30 -3.03 -0.04 -17.98 16 7 N -0.61 -11.40 3.06 -788.04 -2.41 -13.82 16 8 C 0.09 0.94 6.39 86.86 0.56 1.49 16 9 C -0.13 -1.30 7.09 31.99 0.23 -1.07 16 10 C -0.11 -2.06 6.11 31.78 0.19 -1.87 16 11 C 0.14 3.21 3.08 45.34 0.14 3.35 16 12 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 13 C 0.06 1.68 5.03 86.30 0.43 2.11 16 14 N -0.67 -21.86 5.77 -517.95 -2.99 -24.85 16 15 C 0.06 2.16 6.16 85.56 0.53 2.69 16 16 C 0.45 21.51 7.82 87.66 0.69 22.19 16 17 O -0.61 -34.80 15.78 -3.08 -0.05 -34.85 16 18 N -0.59 -29.21 5.09 -306.98 -1.56 -30.77 16 19 C -0.33 -19.78 10.16 84.04 0.85 -18.92 16 20 H 0.06 4.11 7.39 -2.91 -0.02 4.08 16 21 C -0.01 -0.80 5.50 84.93 0.47 -0.33 16 22 N -0.93 -57.08 13.96 21.66 0.30 -56.78 16 23 Si 0.96 40.22 27.74 68.60 1.90 42.12 16 24 H -0.26 -10.34 7.11 99.48 0.71 -9.63 16 25 H -0.27 -11.13 7.11 99.48 0.71 -10.42 16 26 H -0.23 -8.38 6.52 99.48 0.65 -7.73 16 27 N -0.55 -9.28 4.73 -927.72 -4.39 -13.66 16 28 C 0.02 0.20 8.54 127.69 1.09 1.29 16 29 C 0.02 0.37 8.18 127.69 1.04 1.41 16 30 H 0.06 0.42 4.48 -2.38 -0.01 0.41 16 31 H 0.07 0.25 7.89 -2.39 -0.02 0.23 16 32 H 0.07 0.35 8.14 -2.39 -0.02 0.33 16 33 H 0.08 0.74 7.18 -2.39 -0.02 0.72 16 34 H 0.06 0.89 5.92 -2.39 -0.01 0.88 16 35 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 36 H 0.10 0.51 6.46 -2.39 -0.02 0.50 16 37 H 0.11 0.71 8.14 -2.39 -0.02 0.69 16 38 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 39 H 0.08 1.57 7.85 -2.39 -0.02 1.56 16 40 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 41 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 42 H 0.02 0.79 6.76 -2.39 -0.02 0.78 16 43 H 0.34 12.05 8.37 -89.69 -0.75 11.30 16 44 H 0.11 3.36 8.14 -2.39 -0.02 3.34 16 45 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 46 H 0.39 16.18 5.76 -92.71 -0.53 15.65 16 47 H 0.28 15.63 8.31 -92.71 -0.77 14.86 16 48 H 0.05 0.43 5.53 -2.39 -0.01 0.41 16 49 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 50 H 0.08 0.52 6.90 -2.39 -0.02 0.51 16 51 H 0.06 1.45 6.02 -2.38 -0.01 1.43 16 52 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 53 H 0.04 0.64 5.44 -2.39 -0.01 0.63 16 Total: -1.00 -82.56 402.51 -2.00 -84.56 By element: Atomic # 1 Polarization: 42.31 SS G_CDS: -0.41 Total: 41.90 kcal Atomic # 6 Polarization: 16.48 SS G_CDS: 7.65 Total: 24.13 kcal Atomic # 7 Polarization: -128.83 SS G_CDS: -11.05 Total: -139.88 kcal Atomic # 8 Polarization: -52.74 SS G_CDS: -0.09 Total: -52.83 kcal Atomic # 14 Polarization: 40.22 SS G_CDS: 1.90 Total: 42.12 kcal Total: -82.56 -2.00 -84.56 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001483934492.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.550 kcal (2) G-P(sol) polarization free energy of solvation -82.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.559 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.009 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds