Wall clock time and date at job start Sat Apr 11 2020 06:11:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 C 1.53001 * 109.47334 * 2 1 4 4 N 1.46502 * 109.45644 * 303.92838 * 3 2 1 5 5 C 1.36944 * 119.99893 * 297.80461 * 4 3 2 6 6 H 1.07996 * 120.00240 * 356.65335 * 5 4 3 7 7 C 1.38814 * 119.99793 * 176.64076 * 5 4 3 8 8 N 1.31618 * 120.00036 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 119.99816 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.47023 * 90.00489 * 9 7 5 11 11 H 1.48498 * 109.47175 * 210.00462 * 9 7 5 12 12 H 1.48502 * 109.47417 * 330.00622 * 9 7 5 13 13 C 1.53035 * 109.46236 * 63.89611 * 3 2 1 14 14 C 1.53190 * 109.31389 * 181.38763 * 13 3 2 15 15 N 1.46930 * 108.77379 * 305.36713 * 14 13 3 16 16 C 1.34776 * 120.62845 * 233.58608 * 15 14 13 17 17 O 1.21282 * 120.00328 * 359.97438 * 16 15 14 18 18 C 1.50701 * 119.99973 * 180.02562 * 16 15 14 19 19 C 1.52995 * 109.47384 * 179.97438 * 18 16 15 20 20 C 1.53004 * 109.47278 * 179.97438 * 19 18 16 21 21 C 1.52999 * 109.46798 * 180.02562 * 20 19 18 22 22 N 1.46511 * 109.46803 * 180.02562 * 21 20 19 23 23 C 1.34776 * 119.99872 * 180.02562 * 22 21 20 24 24 N 1.34781 * 119.99686 * 180.02562 * 23 22 21 25 25 O 1.21588 * 119.99895 * 359.97438 * 23 22 21 26 26 C 1.46921 * 118.73864 * 53.86178 * 15 14 13 27 27 C 1.53043 * 109.45974 * 183.97156 * 3 2 1 28 28 H 1.09002 * 109.47392 * 294.36452 * 1 2 3 29 29 H 1.09000 * 109.47716 * 54.36769 * 1 2 3 30 30 H 1.09007 * 109.47453 * 174.37073 * 1 2 3 31 31 H 1.09002 * 109.47222 * 239.99630 * 2 1 3 32 32 H 1.08999 * 109.47505 * 119.99918 * 2 1 3 33 33 H 0.96998 * 120.00082 * 117.81503 * 4 3 2 34 34 H 0.96995 * 120.00195 * 179.97438 * 8 7 5 35 35 H 1.09006 * 109.49486 * 61.43452 * 13 3 2 36 36 H 1.08998 * 109.49822 * 301.34568 * 13 3 2 37 37 H 1.09003 * 109.58352 * 185.58678 * 14 13 3 38 38 H 1.08997 * 109.58601 * 65.15847 * 14 13 3 39 39 H 1.09005 * 109.47200 * 59.99731 * 18 16 15 40 40 H 1.09007 * 109.46682 * 299.99915 * 18 16 15 41 41 H 1.09005 * 109.46904 * 59.99878 * 19 18 16 42 42 H 1.09002 * 109.47485 * 300.00286 * 19 18 16 43 43 H 1.08998 * 109.46785 * 300.00131 * 20 19 18 44 44 H 1.08996 * 109.46947 * 60.00052 * 20 19 18 45 45 H 1.08998 * 109.47428 * 299.99576 * 21 20 19 46 46 H 1.08996 * 109.47461 * 60.00205 * 21 20 19 47 47 H 0.96994 * 119.99541 * 359.97438 * 22 21 20 48 48 H 0.96994 * 119.99728 * 359.97438 * 24 23 22 49 49 H 0.97002 * 119.99400 * 179.97438 * 24 23 22 50 50 H 1.09006 * 109.58803 * 65.92406 * 26 15 14 51 51 H 1.09003 * 109.58744 * 186.34915 * 26 15 14 52 52 H 1.09000 * 109.49342 * 298.55867 * 27 3 2 53 53 H 1.08999 * 109.50163 * 58.66164 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 1.4757 2.1596 -1.1462 5 6 1.7618 1.7471 -2.4203 6 1 2.4460 0.9272 -2.5816 7 6 1.1721 2.3826 -3.5044 8 7 0.3385 3.3819 -3.3078 9 14 1.5618 1.8194 -5.2423 10 1 0.5957 0.7680 -5.6502 11 1 1.4590 2.9733 -6.1713 12 1 2.9404 1.2692 -5.2870 13 6 1.6114 2.1349 1.2957 14 6 2.0939 3.5887 1.2769 15 7 3.5432 3.6028 1.0360 16 6 4.3720 4.2583 1.8726 17 8 3.9233 4.8443 2.8350 18 6 5.8562 4.2640 1.6117 19 6 6.5625 5.0733 2.7011 20 6 8.0695 5.0786 2.4365 21 6 8.7758 5.8874 3.5264 22 7 10.2187 5.8929 3.2727 23 6 11.0476 6.5480 4.1096 24 7 12.3749 6.5535 3.8759 25 8 10.5977 7.1346 5.0749 26 6 4.0712 2.8940 -0.1377 27 6 3.5671 1.4433 -0.0999 28 1 -0.3634 0.4240 0.9361 29 1 -0.3634 0.5987 -0.8352 30 1 -0.3634 -1.0227 -0.1008 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 0.8996 2.9266 -1.0026 34 1 -0.0733 3.8263 -4.0653 35 1 2.0512 1.6165 2.1478 36 1 0.5247 2.1132 1.3776 37 1 1.8785 4.0576 2.2371 38 1 1.5857 4.1320 0.4803 39 1 6.0525 4.7156 0.6392 40 1 6.2303 3.2401 1.6189 41 1 6.3663 4.6220 3.6737 42 1 6.1883 6.0970 2.6935 43 1 8.4433 4.0547 2.4445 44 1 8.2660 5.5295 1.4639 45 1 8.4020 6.9113 3.5188 46 1 8.5792 5.4360 4.4988 47 1 10.5775 5.4246 2.5028 48 1 12.7337 6.0857 3.1056 49 1 12.9714 7.0252 4.4780 50 1 3.7209 3.3819 -1.0474 51 1 5.1608 2.9045 -0.1113 52 1 3.9885 0.9315 0.7653 53 1 3.8724 0.9295 -1.0115 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001484813229.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:32 Heat of formation + Delta-G solvation = -101.513346 kcal Electronic energy + Delta-G solvation = -30313.718039 eV Core-core repulsion = 26218.646583 eV Total energy + Delta-G solvation = -4095.071457 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.226 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.30576 -40.79609 -39.45435 -37.02840 -36.13494 -34.97303 -34.43656 -34.10364 -32.15368 -31.72897 -30.77088 -29.80706 -26.54578 -25.55145 -25.36346 -23.81865 -22.80317 -22.32753 -21.94059 -20.48582 -19.42729 -19.13774 -18.86357 -18.19850 -17.92507 -17.15170 -16.73349 -16.58964 -16.29394 -15.78972 -15.74480 -15.48401 -15.35235 -15.32194 -15.17251 -14.75427 -14.57193 -14.36664 -13.90166 -13.84218 -13.49839 -13.16547 -13.00903 -12.88527 -12.80338 -12.66003 -12.49947 -12.43612 -12.24248 -12.13140 -12.06136 -11.96706 -11.72979 -11.52421 -11.49770 -11.47435 -11.40229 -10.91728 -10.80273 -10.73036 -10.59581 -9.94915 -9.51380 -8.80247 -7.79978 -5.04307 1.51222 1.53106 1.59439 1.73412 1.96356 2.18075 2.19402 2.65168 3.54522 3.58018 3.72831 3.82865 3.88981 4.00218 4.05666 4.08044 4.22969 4.31363 4.36762 4.41182 4.48617 4.53243 4.63280 4.65931 4.74256 4.79920 4.80559 4.85009 4.89433 4.90186 4.94394 5.06581 5.10543 5.19469 5.23210 5.30661 5.35094 5.41436 5.43806 5.44980 5.52779 5.59768 5.67451 5.73347 5.79596 5.93028 6.05684 6.41628 6.60753 7.14122 7.27539 7.49183 7.67583 8.26608 8.49668 9.43649 Molecular weight = 340.23amu Principal moments of inertia in cm(-1) A = 0.015346 B = 0.002050 C = 0.001919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1824.158643 B =13657.355742 C =14588.149683 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.119 4.119 3 C 0.193 3.807 4 N -0.716 5.716 5 C -0.198 4.198 6 H 0.078 0.922 7 C -0.079 4.079 8 N -0.971 5.971 9 Si 0.953 3.047 10 H -0.300 1.300 11 H -0.308 1.308 12 H -0.266 1.266 13 C -0.119 4.119 14 C 0.118 3.882 15 N -0.602 5.602 16 C 0.503 3.497 17 O -0.595 6.595 18 C -0.130 4.130 19 C -0.097 4.097 20 C -0.113 4.113 21 C 0.137 3.863 22 N -0.731 5.731 23 C 0.694 3.306 24 N -0.848 5.848 25 O -0.654 6.654 26 C 0.120 3.880 27 C -0.130 4.130 28 H 0.051 0.949 29 H 0.036 0.964 30 H 0.047 0.953 31 H 0.046 0.954 32 H 0.069 0.931 33 H 0.369 0.631 34 H 0.242 0.758 35 H 0.079 0.921 36 H 0.071 0.929 37 H 0.075 0.925 38 H 0.048 0.952 39 H 0.111 0.889 40 H 0.122 0.878 41 H 0.059 0.941 42 H 0.052 0.948 43 H 0.093 0.907 44 H 0.088 0.912 45 H 0.048 0.952 46 H 0.052 0.948 47 H 0.415 0.585 48 H 0.415 0.585 49 H 0.419 0.581 50 H 0.054 0.946 51 H 0.110 0.890 52 H 0.076 0.924 53 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.692 -2.661 9.721 23.919 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.158 4.158 3 C 0.103 3.897 4 N -0.356 5.356 5 C -0.330 4.330 6 H 0.096 0.904 7 C -0.270 4.270 8 N -0.623 5.623 9 Si 0.785 3.215 10 H -0.228 1.228 11 H -0.235 1.235 12 H -0.191 1.191 13 C -0.157 4.157 14 C -0.005 4.005 15 N -0.333 5.333 16 C 0.293 3.707 17 O -0.477 6.477 18 C -0.169 4.169 19 C -0.136 4.136 20 C -0.151 4.151 21 C 0.012 3.988 22 N -0.388 5.388 23 C 0.391 3.609 24 N -0.417 5.417 25 O -0.536 6.536 26 C -0.002 4.002 27 C -0.170 4.170 28 H 0.070 0.930 29 H 0.055 0.945 30 H 0.066 0.934 31 H 0.065 0.935 32 H 0.087 0.913 33 H 0.202 0.798 34 H 0.051 0.949 35 H 0.098 0.902 36 H 0.089 0.911 37 H 0.093 0.907 38 H 0.066 0.934 39 H 0.129 0.871 40 H 0.140 0.860 41 H 0.077 0.923 42 H 0.071 0.929 43 H 0.112 0.888 44 H 0.106 0.894 45 H 0.067 0.933 46 H 0.070 0.930 47 H 0.252 0.748 48 H 0.246 0.754 49 H 0.252 0.748 50 H 0.072 0.928 51 H 0.128 0.872 52 H 0.094 0.906 53 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 21.015 -2.050 10.802 23.717 hybrid contribution -0.369 0.137 -1.706 1.750 sum 20.646 -1.913 9.096 22.642 Atomic orbital electron populations 1.21590 0.96603 1.00268 1.00974 1.21860 0.95931 0.97445 1.00611 1.19854 0.92170 0.91192 0.86504 1.42599 1.57781 1.34468 1.00715 1.19371 1.18469 1.11166 0.83997 0.90411 1.25300 1.01173 0.99957 1.00586 1.69800 1.36004 1.26896 1.29609 0.85422 0.77950 0.76157 0.81968 1.22803 1.23550 1.19126 1.22009 1.01238 0.94677 0.97778 1.21364 0.80784 0.97544 1.00786 1.48221 1.06931 1.51579 1.26616 1.21486 0.90715 0.77179 0.81299 1.90646 1.79217 1.46417 1.31428 1.21724 0.88600 1.04572 1.02027 1.21154 0.94239 1.00035 0.98128 1.21671 0.93304 1.01639 0.98502 1.21153 0.78408 1.00169 0.99099 1.44931 1.06940 1.56777 1.30161 1.16314 0.82741 0.79451 0.82361 1.42789 1.04852 1.60072 1.33969 1.90951 1.77316 1.51997 1.33350 1.21801 0.99379 0.92336 0.86668 1.22300 0.96817 0.95876 1.02002 0.92954 0.94455 0.93390 0.93529 0.91264 0.79805 0.94862 0.90216 0.91059 0.90653 0.93413 0.87102 0.86042 0.92252 0.92897 0.88830 0.89353 0.93348 0.92988 0.74760 0.75374 0.74822 0.92786 0.87216 0.90552 0.91308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.50 9.39 71.98 0.68 -3.83 16 2 C -0.12 -3.69 4.78 30.59 0.15 -3.55 16 3 C 0.19 6.30 0.43 3.63 0.00 6.30 16 4 N -0.72 -30.60 3.06 -303.22 -0.93 -31.53 16 5 C -0.20 -9.50 8.72 84.03 0.73 -8.76 16 6 H 0.08 3.58 6.73 -2.91 -0.02 3.56 16 7 C -0.08 -4.18 5.50 84.86 0.47 -3.71 16 8 N -0.97 -56.48 13.06 21.65 0.28 -56.20 16 9 Si 0.95 43.82 29.55 68.60 2.03 45.85 16 10 H -0.30 -13.99 7.11 99.48 0.71 -13.29 16 11 H -0.31 -14.76 7.11 99.48 0.71 -14.05 16 12 H -0.27 -11.32 7.11 99.48 0.71 -10.62 16 13 C -0.12 -3.57 4.71 30.67 0.14 -3.43 16 14 C 0.12 3.91 6.16 86.36 0.53 4.44 16 15 N -0.60 -17.70 2.97 -818.06 -2.43 -20.12 16 16 C 0.50 14.25 7.70 87.66 0.67 14.92 16 17 O -0.60 -21.60 15.40 -3.03 -0.05 -21.64 16 18 C -0.13 -2.24 4.05 29.85 0.12 -2.12 16 19 C -0.10 -1.67 4.50 30.59 0.14 -1.53 16 20 C -0.11 -1.16 5.33 30.60 0.16 -0.99 16 21 C 0.14 2.11 5.67 86.38 0.49 2.60 16 22 N -0.73 -8.78 5.56 -478.52 -2.66 -11.44 16 23 C 0.69 12.32 8.84 179.05 1.58 13.91 16 24 N -0.85 -6.53 8.88 -184.74 -1.64 -8.17 16 25 O -0.65 -19.37 17.18 -3.99 -0.07 -19.44 16 26 C 0.12 3.26 6.11 86.51 0.53 3.79 16 27 C -0.13 -3.61 4.69 30.82 0.14 -3.46 16 28 H 0.05 1.56 6.79 -2.39 -0.02 1.54 16 29 H 0.04 1.52 7.31 -2.39 -0.02 1.51 16 30 H 0.05 1.41 8.14 -2.38 -0.02 1.39 16 31 H 0.05 1.57 7.60 -2.39 -0.02 1.55 16 32 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 33 H 0.37 18.02 6.54 -92.71 -0.61 17.42 16 34 H 0.24 14.10 8.31 -92.71 -0.77 13.33 16 35 H 0.08 2.13 8.14 -2.38 -0.02 2.11 16 36 H 0.07 2.20 6.60 -2.39 -0.02 2.19 16 37 H 0.08 2.56 7.01 -2.39 -0.02 2.55 16 38 H 0.05 1.83 6.98 -2.39 -0.02 1.81 16 39 H 0.11 1.59 7.93 -2.38 -0.02 1.57 16 40 H 0.12 1.44 7.70 -2.38 -0.02 1.42 16 41 H 0.06 1.19 8.10 -2.38 -0.02 1.17 16 42 H 0.05 1.13 8.10 -2.39 -0.02 1.11 16 43 H 0.09 0.59 8.14 -2.39 -0.02 0.58 16 44 H 0.09 0.66 8.14 -2.39 -0.02 0.64 16 45 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 46 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 47 H 0.42 1.76 8.49 -92.71 -0.79 0.97 16 48 H 0.42 0.08 8.84 -92.71 -0.82 -0.74 16 49 H 0.42 2.78 8.93 -92.71 -0.83 1.95 16 50 H 0.05 1.89 7.72 -2.38 -0.02 1.87 16 51 H 0.11 2.06 5.93 -2.39 -0.01 2.04 16 52 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 53 H 0.07 2.02 7.14 -2.39 -0.02 2.01 16 Total: -1.00 -76.14 411.44 -1.01 -77.15 By element: Atomic # 1 Polarization: 33.06 SS G_CDS: -2.09 Total: 30.96 kcal Atomic # 6 Polarization: 8.03 SS G_CDS: 6.54 Total: 14.57 kcal Atomic # 7 Polarization: -120.08 SS G_CDS: -7.37 Total: -127.46 kcal Atomic # 8 Polarization: -40.97 SS G_CDS: -0.12 Total: -41.08 kcal Atomic # 14 Polarization: 43.82 SS G_CDS: 2.03 Total: 45.85 kcal Total: -76.14 -1.01 -77.15 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484813229.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.360 kcal (2) G-P(sol) polarization free energy of solvation -76.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.501 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.154 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds