Wall clock time and date at job start Sat Apr 11 2020 06:11:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46502 * 120.00147 * 2 1 4 4 C 1.52998 * 109.47211 * 269.99944 * 3 2 1 5 5 C 1.53001 * 109.46941 * 59.99705 * 4 3 2 6 6 C 1.53000 * 109.47158 * 299.99926 * 4 3 2 7 7 C 1.52998 * 109.47261 * 180.02562 * 4 3 2 8 8 N 1.46493 * 109.47250 * 180.02562 * 7 4 3 9 9 C 1.36939 * 120.00312 * 179.97438 * 8 7 4 10 10 H 1.08002 * 119.99446 * 0.02562 * 9 8 7 11 11 C 1.38807 * 120.00548 * 180.02562 * 9 8 7 12 12 N 1.31621 * 119.99835 * 0.02562 * 11 9 8 13 13 Si 1.86800 * 120.00418 * 180.02562 * 11 9 8 14 14 H 1.48498 * 109.47205 * 179.97438 * 13 11 9 15 15 H 1.48499 * 109.46725 * 59.99570 * 13 11 9 16 16 H 1.48506 * 109.46856 * 299.99892 * 13 11 9 17 17 C 1.34781 * 119.99937 * 180.02562 * 2 1 3 18 18 O 1.21288 * 120.00115 * 175.32981 * 17 2 1 19 19 C 1.50701 * 120.00128 * 355.33393 * 17 2 1 20 20 H 1.08996 * 109.49685 * 52.94533 * 19 17 2 21 21 C 1.53037 * 109.49969 * 173.01250 * 19 17 2 22 22 C 1.53039 * 109.53914 * 181.31421 * 21 19 17 23 23 C 1.53192 * 109.31443 * 298.63656 * 22 21 19 24 24 N 1.46929 * 108.77494 * 54.63249 * 23 22 21 25 25 C 1.34780 * 120.62994 * 126.41289 * 24 23 22 26 26 N 1.34775 * 119.99681 * 354.38023 * 25 24 23 27 27 O 1.21588 * 120.00014 * 174.38502 * 25 24 23 28 28 C 1.46927 * 118.74052 * 306.39272 * 24 23 22 29 29 H 1.09002 * 109.46898 * 84.45207 * 1 2 3 30 30 H 1.08998 * 109.46960 * 204.45083 * 1 2 3 31 31 H 1.08999 * 109.46774 * 324.45491 * 1 2 3 32 32 H 1.08999 * 109.46788 * 150.00035 * 3 2 1 33 33 H 1.08999 * 109.46714 * 30.00387 * 3 2 1 34 34 H 1.08996 * 109.47061 * 179.97438 * 5 4 3 35 35 H 1.08994 * 109.47336 * 299.99913 * 5 4 3 36 36 H 1.09006 * 109.46929 * 60.00330 * 5 4 3 37 37 H 1.08999 * 109.47405 * 300.00255 * 6 4 3 38 38 H 1.09007 * 109.47129 * 60.00276 * 6 4 3 39 39 H 1.08998 * 109.47250 * 179.97438 * 6 4 3 40 40 H 1.09000 * 109.47260 * 59.99720 * 7 4 3 41 41 H 1.08998 * 109.46810 * 299.99899 * 7 4 3 42 42 H 0.97004 * 120.00155 * 359.97438 * 8 7 4 43 43 H 0.97005 * 119.99743 * 359.97438 * 12 11 9 44 44 H 1.09000 * 109.46070 * 301.34021 * 21 19 17 45 45 H 1.09004 * 109.45830 * 61.29804 * 21 19 17 46 46 H 1.08994 * 109.49517 * 58.58668 * 22 21 19 47 47 H 1.08997 * 109.49462 * 178.65222 * 22 21 19 48 48 H 1.08991 * 109.58648 * 174.41982 * 23 22 21 49 49 H 1.09003 * 109.58727 * 294.70561 * 23 22 21 50 50 H 0.96995 * 120.00391 * 6.10473 * 26 25 24 51 51 H 0.97005 * 119.99427 * 186.09789 * 26 25 24 52 52 H 1.09000 * 109.58352 * 293.81960 * 28 24 23 53 53 H 1.08991 * 109.58692 * 173.39243 * 28 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4525 1.7104 -1.4425 5 6 1.1157 1.8933 -2.1637 6 6 3.2794 0.6441 -2.1637 7 6 3.2181 3.0351 -1.4425 8 7 3.4618 3.4583 -2.8236 9 6 4.1349 4.6242 -3.0739 10 1 4.4865 5.2316 -2.2530 11 6 4.3653 5.0256 -4.3826 12 7 3.9364 4.2856 -5.3830 13 14 5.2841 6.6157 -4.7239 14 1 5.3989 6.8160 -6.1909 15 1 6.6419 6.5407 -4.1273 16 1 4.5424 7.7543 -4.1249 17 6 2.1389 -1.1672 -0.0005 18 8 3.3487 -1.1690 -0.0860 19 6 1.3891 -2.4702 0.1051 20 1 0.6151 -2.5077 -0.6614 21 6 2.3606 -3.6361 -0.0926 22 6 1.5946 -4.9589 -0.0182 23 6 0.9515 -5.0948 1.3655 24 7 0.1282 -3.9054 1.6232 25 6 -1.1668 -4.0298 1.9754 26 7 -1.7490 -5.2453 1.9842 27 8 -1.8099 -3.0454 2.2850 28 6 0.7436 -2.5779 1.4902 29 1 -0.3633 0.0994 -1.0229 30 1 -0.3633 -0.9355 0.4254 31 1 -0.3633 0.8362 0.5974 32 1 3.1499 1.1383 0.5138 33 1 1.6084 2.0283 0.5139 34 1 1.2973 2.2084 -3.1912 35 1 0.5707 0.9494 -2.1638 36 1 0.5266 2.6530 -1.6499 37 1 4.2318 0.5137 -1.6499 38 1 2.7344 -0.2999 -2.1638 39 1 3.4607 0.9585 -3.1915 40 1 4.1705 2.9043 -0.9287 41 1 2.6294 3.7949 -0.9285 42 1 3.1463 2.9125 -3.5610 43 1 3.4596 3.4596 -5.2057 44 1 2.8397 -3.5482 -1.0677 45 1 3.1204 -3.6120 0.6886 46 1 0.8183 -4.9733 -0.7831 47 1 2.2831 -5.7877 -0.1829 48 1 0.3243 -5.9858 1.3910 49 1 1.7301 -5.1742 2.1242 50 1 -1.2159 -6.0396 1.8238 51 1 -2.7012 -5.3257 2.1510 52 1 1.5053 -2.4495 2.2593 53 1 -0.0207 -1.8084 1.5979 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001485255026.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:43 Heat of formation + Delta-G solvation = -70.356443 kcal Electronic energy + Delta-G solvation = -31621.919397 eV Core-core repulsion = 27528.199005 eV Total energy + Delta-G solvation = -4093.720392 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.226 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.96608 -40.96373 -39.11825 -37.98788 -36.65799 -35.35538 -34.86951 -33.35453 -32.49330 -31.73241 -28.97793 -28.25918 -27.19322 -26.93554 -26.41664 -25.11849 -24.21405 -22.60506 -20.76878 -20.28230 -19.82602 -19.45222 -19.25733 -18.14539 -17.84010 -17.52491 -16.98944 -16.54308 -16.23786 -16.05330 -15.76992 -15.69730 -15.44714 -15.36642 -15.04103 -14.60545 -14.45968 -14.27282 -14.24174 -14.19509 -13.84688 -13.80715 -13.65473 -13.05093 -12.87884 -12.64669 -12.57506 -12.55197 -12.45232 -12.11543 -12.02355 -11.90810 -11.87103 -11.73491 -11.70338 -11.60039 -11.33395 -11.27564 -10.94078 -10.74999 -10.68059 -9.67483 -9.62020 -9.10324 -8.41430 -5.33672 1.45410 1.56408 1.67267 1.77149 1.83622 2.02779 2.12877 2.70893 3.20154 3.38290 3.42476 3.65116 3.70092 3.77786 3.81412 3.85572 3.99735 4.05684 4.06775 4.15607 4.20508 4.38420 4.44305 4.49539 4.50982 4.57465 4.64518 4.67665 4.71358 4.76484 4.80791 4.83856 4.87340 4.94746 5.02566 5.04676 5.06086 5.13174 5.16420 5.33664 5.35360 5.38452 5.41997 5.52010 5.56831 5.82423 6.03092 6.36794 6.47576 6.89585 7.08884 7.14748 7.60515 8.00161 8.11981 9.10372 Molecular weight = 340.23amu Principal moments of inertia in cm(-1) A = 0.027119 B = 0.002228 C = 0.002151 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1032.229003 B =12565.544336 C =13017.048653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.059 3.941 2 N -0.604 5.604 3 C 0.136 3.864 4 C -0.077 4.077 5 C -0.127 4.127 6 C -0.104 4.104 7 C 0.169 3.831 8 N -0.750 5.750 9 C -0.333 4.333 10 H 0.065 0.935 11 C -0.107 4.107 12 N -0.975 5.975 13 Si 1.130 2.870 14 H -0.292 1.292 15 H -0.280 1.280 16 H -0.275 1.275 17 C 0.513 3.487 18 O -0.564 6.564 19 C -0.111 4.111 20 H 0.106 0.894 21 C -0.100 4.100 22 C -0.126 4.126 23 C 0.105 3.895 24 N -0.624 5.624 25 C 0.704 3.296 26 N -0.848 5.848 27 O -0.639 6.639 28 C 0.139 3.861 29 H 0.066 0.934 30 H 0.091 0.909 31 H 0.087 0.913 32 H 0.069 0.931 33 H 0.100 0.900 34 H 0.027 0.973 35 H 0.074 0.926 36 H 0.062 0.938 37 H 0.038 0.962 38 H 0.052 0.948 39 H 0.022 0.978 40 H 0.009 0.991 41 H 0.026 0.974 42 H 0.362 0.638 43 H 0.241 0.759 44 H 0.058 0.942 45 H 0.065 0.935 46 H 0.072 0.928 47 H 0.101 0.899 48 H 0.110 0.890 49 H 0.081 0.919 50 H 0.411 0.589 51 H 0.420 0.580 52 H 0.068 0.932 53 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.685 -25.993 17.430 33.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 N -0.336 5.336 3 C 0.013 3.987 4 C -0.078 4.078 5 C -0.184 4.184 6 C -0.161 4.161 7 C 0.042 3.958 8 N -0.396 5.396 9 C -0.465 4.465 10 H 0.083 0.917 11 C -0.298 4.298 12 N -0.623 5.623 13 Si 0.955 3.045 14 H -0.218 1.218 15 H -0.206 1.206 16 H -0.201 1.201 17 C 0.301 3.699 18 O -0.442 6.442 19 C -0.133 4.133 20 H 0.124 0.876 21 C -0.138 4.138 22 C -0.165 4.165 23 C -0.016 4.016 24 N -0.361 5.361 25 C 0.403 3.597 26 N -0.419 5.419 27 O -0.520 6.520 28 C 0.014 3.986 29 H 0.084 0.916 30 H 0.109 0.891 31 H 0.106 0.894 32 H 0.087 0.913 33 H 0.118 0.882 34 H 0.046 0.954 35 H 0.092 0.908 36 H 0.081 0.919 37 H 0.057 0.943 38 H 0.071 0.929 39 H 0.042 0.958 40 H 0.027 0.973 41 H 0.044 0.956 42 H 0.195 0.805 43 H 0.051 0.949 44 H 0.077 0.923 45 H 0.084 0.916 46 H 0.090 0.910 47 H 0.119 0.881 48 H 0.128 0.872 49 H 0.099 0.901 50 H 0.245 0.755 51 H 0.254 0.746 52 H 0.087 0.913 53 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -11.695 -24.167 16.605 31.569 hybrid contribution -0.476 -1.213 0.550 1.414 sum -12.171 -25.380 17.155 32.963 Atomic orbital electron populations 1.22418 0.77681 1.04996 1.03175 1.47839 1.07935 1.05282 1.72550 1.21361 0.97651 0.85281 0.94433 1.21031 0.95926 0.94165 0.96726 1.21822 0.95574 1.01821 0.99176 1.21530 0.99007 0.97339 0.98242 1.20661 0.95843 0.93521 0.85784 1.42578 1.68814 1.25334 1.02855 1.20417 1.31145 1.00263 0.94639 0.91696 1.27270 1.03110 1.08152 0.91275 1.70997 1.42894 1.15633 1.32772 0.82604 0.75135 0.71359 0.75451 1.21787 1.20582 1.20133 1.20914 0.87644 0.85870 0.75461 1.90726 1.15707 1.87578 1.50237 1.21668 0.99306 0.92223 1.00098 0.87647 1.21330 0.96857 0.93021 1.02605 1.21918 1.00314 0.97090 0.97141 1.21962 0.95333 0.86954 0.97399 1.47206 1.09048 1.07654 1.72237 1.16060 0.81456 0.84411 0.77753 1.42969 1.14022 1.06364 1.78587 1.90945 1.64462 1.39069 1.57548 1.21432 0.97713 0.85231 0.94176 0.91566 0.89108 0.89414 0.91292 0.88167 0.95365 0.90767 0.91922 0.94322 0.92913 0.95848 0.97342 0.95631 0.80454 0.94861 0.92342 0.91642 0.90959 0.88055 0.87168 0.90097 0.75495 0.74631 0.91343 0.88292 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.99 9.14 127.77 1.17 2.16 16 2 N -0.60 -13.83 2.40 -846.75 -2.03 -15.86 16 3 C 0.14 3.73 4.62 86.38 0.40 4.13 16 4 C -0.08 -2.64 0.60 -52.18 -0.03 -2.67 16 5 C -0.13 -4.04 7.70 71.98 0.55 -3.48 16 6 C -0.10 -3.97 6.90 71.98 0.50 -3.47 16 7 C 0.17 7.28 5.15 86.38 0.44 7.73 16 8 N -0.75 -40.23 5.00 -343.47 -1.72 -41.94 16 9 C -0.33 -19.74 9.99 84.03 0.84 -18.90 16 10 H 0.07 3.75 7.83 -2.91 -0.02 3.72 16 11 C -0.11 -6.50 5.50 84.86 0.47 -6.03 16 12 N -0.97 -63.40 13.70 21.65 0.30 -63.10 16 13 Si 1.13 53.89 29.92 68.60 2.05 55.94 16 14 H -0.29 -14.13 7.11 99.48 0.71 -13.42 16 15 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 16 H -0.28 -12.11 7.11 99.48 0.71 -11.40 16 17 C 0.51 12.68 5.53 87.66 0.48 13.17 16 18 O -0.56 -18.46 13.43 -3.05 -0.04 -18.50 16 19 C -0.11 -1.91 1.83 -11.46 -0.02 -1.93 16 20 H 0.11 1.68 7.67 -2.39 -0.02 1.66 16 21 C -0.10 -1.55 4.47 30.62 0.14 -1.41 16 22 C -0.13 -0.94 6.08 30.67 0.19 -0.76 16 23 C 0.11 0.60 6.43 86.36 0.56 1.15 16 24 N -0.62 -7.80 2.97 -836.90 -2.49 -10.29 16 25 C 0.70 11.02 8.57 179.05 1.53 12.56 16 26 N -0.85 -5.41 8.79 -184.74 -1.62 -7.04 16 27 O -0.64 -16.09 16.62 -3.99 -0.07 -16.15 16 28 C 0.14 2.23 5.33 86.36 0.46 2.69 16 29 H 0.07 1.10 6.02 -2.39 -0.01 1.08 16 30 H 0.09 1.40 3.92 -2.39 -0.01 1.39 16 31 H 0.09 1.27 7.97 -2.39 -0.02 1.25 16 32 H 0.07 2.11 7.49 -2.39 -0.02 2.10 16 33 H 0.10 2.29 7.95 -2.39 -0.02 2.27 16 34 H 0.03 1.08 6.86 -2.39 -0.02 1.06 16 35 H 0.07 1.96 5.25 -2.39 -0.01 1.95 16 36 H 0.06 1.84 8.14 -2.38 -0.02 1.82 16 37 H 0.04 1.60 7.64 -2.39 -0.02 1.58 16 38 H 0.05 1.84 6.07 -2.38 -0.01 1.83 16 39 H 0.02 1.00 6.86 -2.39 -0.02 0.98 16 40 H 0.01 0.39 8.14 -2.39 -0.02 0.37 16 41 H 0.03 1.08 8.14 -2.39 -0.02 1.06 16 42 H 0.36 20.14 4.19 -92.71 -0.39 19.75 16 43 H 0.24 15.74 6.77 -92.70 -0.63 15.11 16 44 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 45 H 0.06 1.14 8.06 -2.38 -0.02 1.13 16 46 H 0.07 0.54 8.14 -2.39 -0.02 0.52 16 47 H 0.10 0.43 8.14 -2.39 -0.02 0.41 16 48 H 0.11 -0.08 5.57 -2.39 -0.01 -0.10 16 49 H 0.08 0.41 8.14 -2.39 -0.02 0.39 16 50 H 0.41 -0.05 6.29 -92.71 -0.58 -0.63 16 51 H 0.42 2.03 8.93 -92.70 -0.83 1.20 16 52 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 53 H 0.10 1.81 4.34 -2.39 -0.01 1.80 16 Total: -1.00 -84.03 392.79 1.35 -82.68 By element: Atomic # 1 Polarization: 30.04 SS G_CDS: -0.70 Total: 29.33 kcal Atomic # 6 Polarization: -2.75 SS G_CDS: 7.67 Total: 4.93 kcal Atomic # 7 Polarization: -130.67 SS G_CDS: -7.56 Total: -138.23 kcal Atomic # 8 Polarization: -34.54 SS G_CDS: -0.11 Total: -34.65 kcal Atomic # 14 Polarization: 53.89 SS G_CDS: 2.05 Total: 55.94 kcal Total: -84.03 1.35 -82.68 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485255026.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.324 kcal (2) G-P(sol) polarization free energy of solvation -84.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.351 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.681 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds