Wall clock time and date at job start Sat Apr 11 2020 06:12:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.36934 * 120.00387 * 2 1 4 4 H 1.07998 * 120.00292 * 208.27456 * 3 2 1 5 5 C 1.38819 * 119.99939 * 28.27234 * 3 2 1 6 6 N 1.31617 * 119.99675 * 7.68173 * 5 3 2 7 7 Si 1.86803 * 119.99974 * 187.68331 * 5 3 2 8 8 H 1.48499 * 109.46938 * 359.97438 * 7 5 3 9 9 H 1.48499 * 109.46760 * 119.99891 * 7 5 3 10 10 H 1.48502 * 109.46928 * 239.99747 * 7 5 3 11 11 C 1.46501 * 119.99681 * 180.02562 * 2 1 3 12 12 C 1.52999 * 109.47192 * 90.00304 * 11 2 1 13 13 H 1.09002 * 110.88346 * 302.57062 * 12 11 2 14 14 C 1.55157 * 111.00801 * 66.45055 * 12 11 2 15 15 C 1.54318 * 102.94629 * 153.61702 * 14 12 11 16 16 N 1.47029 * 107.27035 * 337.80722 * 15 14 12 17 17 C 1.34777 * 125.65005 * 178.89968 * 16 15 14 18 18 O 1.21279 * 119.99733 * 185.64792 * 17 16 15 19 19 C 1.50699 * 119.99908 * 5.38026 * 17 16 15 20 20 H 1.09002 * 109.46840 * 334.30118 * 19 17 16 21 21 N 1.46501 * 109.46947 * 214.31012 * 19 17 16 22 22 C 1.34779 * 120.00341 * 155.00145 * 21 19 17 23 23 N 1.34769 * 119.99877 * 179.97438 * 22 21 19 24 24 O 1.21591 * 119.99523 * 359.97438 * 22 21 19 25 25 C 1.52992 * 109.47430 * 94.30444 * 19 17 16 26 26 C 1.52995 * 109.47219 * 65.96952 * 25 19 17 27 27 C 1.53000 * 109.47110 * 185.97011 * 25 19 17 28 28 C 1.53002 * 109.47097 * 305.97182 * 25 19 17 29 29 C 1.47429 * 108.69986 * 359.17219 * 16 15 14 30 30 H 1.09001 * 109.47084 * 274.25520 * 1 2 3 31 31 H 1.09007 * 109.46847 * 34.24531 * 1 2 3 32 32 H 1.09002 * 109.47643 * 154.24827 * 1 2 3 33 33 H 0.96999 * 119.99714 * 179.97438 * 6 5 3 34 34 H 1.08997 * 109.47262 * 329.99738 * 11 2 1 35 35 H 1.09004 * 109.46859 * 209.99671 * 11 2 1 36 36 H 1.09000 * 110.71988 * 35.25039 * 14 12 11 37 37 H 1.09000 * 110.87122 * 272.05558 * 14 12 11 38 38 H 1.08995 * 109.88553 * 218.39111 * 15 14 12 39 39 H 1.09002 * 109.88355 * 97.21840 * 15 14 12 40 40 H 0.97000 * 119.99698 * 334.99291 * 21 19 17 41 41 H 0.97000 * 120.00162 * 359.97438 * 23 22 21 42 42 H 0.97007 * 119.99653 * 179.97438 * 23 22 21 43 43 H 1.09009 * 109.47359 * 60.00116 * 26 25 19 44 44 H 1.09001 * 109.47859 * 179.97438 * 26 25 19 45 45 H 1.08998 * 109.47202 * 300.00146 * 26 25 19 46 46 H 1.08996 * 109.47290 * 60.00055 * 27 25 19 47 47 H 1.09007 * 109.47212 * 180.02562 * 27 25 19 48 48 H 1.08994 * 109.47272 * 300.00024 * 27 25 19 49 49 H 1.08993 * 109.47367 * 55.62003 * 28 25 19 50 50 H 1.09004 * 109.47129 * 175.61811 * 28 25 19 51 51 H 1.09005 * 109.47155 * 295.61321 * 28 25 19 52 52 H 1.09000 * 110.36806 * 142.73845 * 29 16 15 53 53 H 1.09005 * 110.35951 * 265.05944 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1497 1.1858 0.0000 4 1 3.1330 1.2416 -0.4430 5 6 1.5799 2.3164 0.5694 6 7 0.4523 2.2177 1.2411 7 14 2.4134 3.9776 0.3824 8 1 3.6589 3.8199 -0.4107 9 1 1.4972 4.9153 -0.3150 10 1 2.7470 4.5180 1.7248 11 6 2.1974 -1.2688 -0.0006 12 6 2.4524 -1.7098 -1.4432 13 1 1.5155 -1.8031 -1.9924 14 6 3.4223 -0.7337 -2.1601 15 6 4.0756 -1.6245 -3.2376 16 7 3.9372 -3.0193 -2.7934 17 6 4.3624 -4.1048 -3.4697 18 8 4.1046 -5.2157 -3.0569 19 6 5.1528 -3.9383 -4.7419 20 1 4.9081 -2.9793 -5.1987 21 7 4.8178 -5.0210 -5.6702 22 6 4.9747 -4.8438 -6.9971 23 7 4.6670 -5.8401 -7.8509 24 8 5.3938 -3.7851 -7.4236 25 6 6.6484 -3.9843 -4.4229 26 6 7.0199 -5.3808 -3.9203 27 6 7.4496 -3.6675 -5.6872 28 6 6.9714 -2.9507 -3.3420 29 6 3.2506 -3.0340 -1.4889 30 1 -0.3633 0.0763 1.0248 31 1 -0.3633 0.8496 -0.5783 32 1 -0.3634 -0.9256 -0.4465 33 1 0.0543 3.0076 1.6393 34 1 1.6083 -2.0286 0.5129 35 1 3.1498 -1.1387 0.5133 36 1 4.1724 -0.3558 -1.4653 37 1 2.8753 0.0894 -2.6199 38 1 5.1308 -1.3707 -3.3387 39 1 3.5660 -1.4869 -4.1912 40 1 4.4832 -5.8655 -5.3299 41 1 4.3330 -6.6848 -7.5105 42 1 4.7796 -5.7124 -8.8059 43 1 6.7898 -6.1173 -4.6904 44 1 8.0855 -5.4139 -3.6934 45 1 6.4491 -5.6066 -3.0196 46 1 7.1849 -2.6726 -6.0453 47 1 8.5152 -3.7007 -5.4601 48 1 7.2195 -4.4038 -6.4572 49 1 6.3439 -3.1298 -2.4690 50 1 8.0205 -3.0366 -3.0591 51 1 6.7799 -1.9494 -3.7279 52 1 2.5750 -3.8871 -1.4255 53 1 3.9781 -3.0640 -0.6777 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001494172499.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:12:57 Heat of formation + Delta-G solvation = -67.740653 kcal Electronic energy + Delta-G solvation = -31921.124042 eV Core-core repulsion = 27827.517080 eV Total energy + Delta-G solvation = -4093.606963 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.226 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.10813 -40.61364 -39.10088 -37.74991 -37.06491 -35.04440 -33.91318 -33.89842 -32.21972 -30.44348 -28.90638 -28.18267 -27.95369 -27.81661 -26.66805 -24.17041 -23.14417 -22.29293 -21.09142 -21.01266 -19.80977 -19.35608 -18.75081 -18.33092 -17.72918 -17.40365 -17.04767 -16.70950 -16.10047 -16.02246 -15.72494 -15.28451 -15.21092 -15.09522 -14.67237 -14.58556 -14.45990 -14.37070 -14.14441 -13.69085 -13.54944 -13.28990 -13.15628 -12.99746 -12.83452 -12.79269 -12.63781 -12.58496 -12.33786 -12.24905 -12.13574 -11.95519 -11.89404 -11.75052 -11.71329 -11.54599 -11.38400 -11.30003 -10.91356 -10.60466 -10.58053 -10.02814 -9.67487 -8.63168 -7.75594 -5.29248 1.31693 1.49249 1.51488 1.60366 1.64963 2.11467 2.23657 2.55276 3.25564 3.38963 3.55206 3.63551 3.68383 3.75758 3.82831 3.97662 4.03932 4.15934 4.26505 4.35956 4.44881 4.47695 4.61971 4.67350 4.72163 4.78839 4.85776 4.88855 4.89870 4.91588 5.00296 5.00726 5.05511 5.12023 5.13144 5.20174 5.24266 5.32351 5.32862 5.41259 5.43634 5.47964 5.52931 5.74590 5.76804 5.82703 6.05110 6.41118 6.44510 6.94910 7.02664 7.23199 7.63955 7.93658 8.41023 9.27695 Molecular weight = 340.23amu Principal moments of inertia in cm(-1) A = 0.017561 B = 0.002630 C = 0.002551 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1594.036793 B =10645.708620 C =10972.760425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.175 3.825 2 N -0.614 5.614 3 C -0.246 4.246 4 H 0.081 0.919 5 C -0.057 4.057 6 N -0.943 5.943 7 Si 0.961 3.039 8 H -0.259 1.259 9 H -0.297 1.297 10 H -0.297 1.297 11 C 0.162 3.838 12 C -0.106 4.106 13 H 0.065 0.935 14 C -0.106 4.106 15 C 0.094 3.906 16 N -0.606 5.606 17 C 0.532 3.468 18 O -0.564 6.564 19 C 0.164 3.836 20 H 0.099 0.901 21 N -0.723 5.723 22 C 0.704 3.296 23 N -0.848 5.848 24 O -0.623 6.623 25 C -0.067 4.067 26 C -0.136 4.136 27 C -0.120 4.120 28 C -0.150 4.150 29 C 0.118 3.882 30 H 0.003 0.997 31 H 0.012 0.988 32 H 0.026 0.974 33 H 0.244 0.756 34 H 0.045 0.955 35 H 0.051 0.949 36 H 0.073 0.927 37 H 0.071 0.929 38 H 0.092 0.908 39 H 0.072 0.928 40 H 0.410 0.590 41 H 0.412 0.588 42 H 0.423 0.577 43 H 0.058 0.942 44 H 0.067 0.933 45 H 0.047 0.953 46 H 0.050 0.950 47 H 0.062 0.938 48 H 0.050 0.950 49 H 0.050 0.950 50 H 0.075 0.925 51 H 0.068 0.932 52 H 0.071 0.929 53 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.477 -17.627 -15.567 26.622 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 N -0.337 5.337 3 C -0.377 4.377 4 H 0.099 0.901 5 C -0.251 4.251 6 N -0.591 5.591 7 Si 0.790 3.210 8 H -0.183 1.183 9 H -0.225 1.225 10 H -0.225 1.225 11 C 0.036 3.964 12 C -0.128 4.128 13 H 0.083 0.917 14 C -0.144 4.144 15 C -0.028 4.028 16 N -0.339 5.339 17 C 0.321 3.679 18 O -0.443 6.443 19 C 0.054 3.946 20 H 0.117 0.883 21 N -0.381 5.381 22 C 0.403 3.597 23 N -0.417 5.417 24 O -0.504 6.504 25 C -0.068 4.068 26 C -0.193 4.193 27 C -0.177 4.177 28 C -0.208 4.208 29 C -0.004 4.004 30 H 0.021 0.979 31 H 0.031 0.969 32 H 0.045 0.955 33 H 0.054 0.946 34 H 0.064 0.936 35 H 0.069 0.931 36 H 0.092 0.908 37 H 0.090 0.910 38 H 0.110 0.890 39 H 0.090 0.910 40 H 0.247 0.753 41 H 0.242 0.758 42 H 0.256 0.744 43 H 0.077 0.923 44 H 0.086 0.914 45 H 0.066 0.934 46 H 0.069 0.931 47 H 0.081 0.919 48 H 0.069 0.931 49 H 0.069 0.931 50 H 0.094 0.906 51 H 0.087 0.913 52 H 0.090 0.910 53 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 12.620 -17.234 -15.520 26.403 hybrid contribution -0.581 0.536 0.196 0.815 sum 12.038 -16.698 -15.324 25.662 Atomic orbital electron populations 1.20524 0.83462 0.95626 0.97374 1.44031 1.01687 1.01737 1.86249 1.19608 1.01398 0.87289 1.29365 0.90104 1.25927 0.98655 1.02209 0.98332 1.70212 1.21411 1.28296 1.39135 0.85281 0.78425 0.80446 0.76834 1.18306 1.22472 1.22462 1.20745 0.95943 0.86892 0.92859 1.22812 0.97557 0.93261 0.99167 0.91667 1.22459 0.98090 0.97065 0.96750 1.22423 1.02391 0.79681 0.98325 1.48532 1.57168 1.06725 1.21469 1.20319 0.78923 0.83217 0.85469 1.90662 1.58636 1.24957 1.70070 1.20675 0.94605 0.92456 0.86875 0.88323 1.44704 1.71181 1.18040 1.04140 1.15988 0.78212 0.84298 0.81243 1.42785 1.72377 1.16551 1.10033 1.90971 1.53943 1.27751 1.77754 1.20847 0.91530 0.97364 0.97104 1.21811 1.01683 0.94917 1.00873 1.21766 0.98974 1.01703 0.95264 1.22082 1.02827 0.98489 0.97382 1.22164 0.95588 0.98049 0.84646 0.97880 0.96905 0.95523 0.94628 0.93614 0.93055 0.90805 0.91002 0.89034 0.91015 0.75306 0.75787 0.74384 0.92315 0.91446 0.93370 0.93108 0.91943 0.93107 0.93116 0.90639 0.91344 0.91047 0.90563 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 8.47 8.98 127.77 1.15 9.61 16 2 N -0.61 -28.88 2.86 -726.93 -2.08 -30.96 16 3 C -0.25 -12.55 9.01 84.04 0.76 -11.80 16 4 H 0.08 3.87 6.53 -2.91 -0.02 3.85 16 5 C -0.06 -3.08 5.20 84.86 0.44 -2.64 16 6 N -0.94 -55.22 10.76 21.65 0.23 -54.99 16 7 Si 0.96 43.75 29.56 68.60 2.03 45.78 16 8 H -0.26 -10.89 7.11 99.48 0.71 -10.18 16 9 H -0.30 -13.77 7.11 99.48 0.71 -13.06 16 10 H -0.30 -13.75 7.11 99.48 0.71 -13.05 16 11 C 0.16 5.96 5.19 86.38 0.45 6.41 16 12 C -0.11 -3.22 3.27 -9.48 -0.03 -3.25 16 13 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 14 C -0.11 -3.01 5.06 31.78 0.16 -2.84 16 15 C 0.09 2.15 5.67 86.73 0.49 2.64 16 16 N -0.61 -14.93 2.59 -812.23 -2.10 -17.03 16 17 C 0.53 13.19 5.23 87.66 0.46 13.65 16 18 O -0.56 -16.36 15.25 -3.02 -0.05 -16.41 16 19 C 0.16 3.48 1.65 44.24 0.07 3.55 16 20 H 0.10 2.30 6.39 -2.39 -0.02 2.28 16 21 N -0.72 -13.36 4.01 -461.42 -1.85 -15.21 16 22 C 0.70 13.53 7.45 179.06 1.33 14.86 16 23 N -0.85 -8.71 8.88 -184.75 -1.64 -10.35 16 24 O -0.62 -16.64 14.32 -4.00 -0.06 -16.70 16 25 C -0.07 -1.25 0.62 -52.19 -0.03 -1.28 16 26 C -0.14 -2.43 7.99 71.98 0.57 -1.86 16 27 C -0.12 -2.30 7.10 71.98 0.51 -1.79 16 28 C -0.15 -2.68 7.04 71.98 0.51 -2.17 16 29 C 0.12 3.12 6.40 86.78 0.56 3.67 16 30 H 0.00 0.16 7.30 -2.39 -0.02 0.14 16 31 H 0.01 0.65 7.50 -2.38 -0.02 0.63 16 32 H 0.03 1.09 8.04 -2.39 -0.02 1.07 16 33 H 0.24 14.02 8.31 -92.71 -0.77 13.25 16 34 H 0.05 1.61 8.07 -2.39 -0.02 1.59 16 35 H 0.05 1.88 8.00 -2.38 -0.02 1.86 16 36 H 0.07 2.17 7.41 -2.39 -0.02 2.15 16 37 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 38 H 0.09 1.80 5.29 -2.39 -0.01 1.78 16 39 H 0.07 1.59 7.93 -2.39 -0.02 1.57 16 40 H 0.41 6.73 7.93 -92.71 -0.74 5.99 16 41 H 0.41 1.93 8.84 -92.71 -0.82 1.11 16 42 H 0.42 3.39 8.93 -92.70 -0.83 2.57 16 43 H 0.06 0.99 7.45 -2.38 -0.02 0.98 16 44 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 45 H 0.05 1.03 6.65 -2.39 -0.02 1.02 16 46 H 0.05 1.10 7.90 -2.39 -0.02 1.08 16 47 H 0.06 1.02 8.14 -2.38 -0.02 1.00 16 48 H 0.05 1.08 5.62 -2.39 -0.01 1.06 16 49 H 0.05 1.03 6.27 -2.39 -0.01 1.02 16 50 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 51 H 0.07 1.16 6.46 -2.38 -0.02 1.14 16 52 H 0.07 1.95 7.99 -2.39 -0.02 1.93 16 53 H 0.08 1.92 8.03 -2.38 -0.02 1.90 16 Total: -1.00 -68.28 398.96 0.44 -67.84 By element: Atomic # 1 Polarization: 22.70 SS G_CDS: -1.44 Total: 21.26 kcal Atomic # 6 Polarization: 19.38 SS G_CDS: 7.40 Total: 26.77 kcal Atomic # 7 Polarization: -121.11 SS G_CDS: -7.44 Total: -128.54 kcal Atomic # 8 Polarization: -33.00 SS G_CDS: -0.10 Total: -33.11 kcal Atomic # 14 Polarization: 43.75 SS G_CDS: 2.03 Total: 45.78 kcal Total: -68.28 0.44 -67.84 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001494172499.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.098 kcal (2) G-P(sol) polarization free energy of solvation -68.283 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.185 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.444 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.838 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.741 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds