Wall clock time and date at job start Sat Apr 11 2020 06:13:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52995 * 109.46787 * 2 1 4 4 H 1.09002 * 109.47513 * 304.91968 * 3 2 1 5 5 C 1.50701 * 109.46866 * 184.92670 * 3 2 1 6 6 O 1.21280 * 119.99912 * 259.55014 * 5 3 2 7 7 N 1.34776 * 120.00096 * 79.55309 * 5 3 2 8 8 C 1.46496 * 120.00227 * 359.97438 * 7 5 3 9 9 C 1.46500 * 120.00121 * 179.97438 * 7 5 3 10 10 H 1.09004 * 110.90242 * 356.13409 * 9 7 5 11 11 C 1.55433 * 111.10571 * 232.17369 * 9 7 5 12 12 C 1.54329 * 103.04238 * 206.29713 * 11 9 7 13 13 N 1.47435 * 107.23279 * 22.28276 * 12 11 9 14 14 C 1.46904 * 110.99983 * 123.26253 * 13 12 11 15 15 C 1.50696 * 109.47179 * 49.15222 * 14 13 12 16 16 O 1.21292 * 120.00274 * 359.97438 * 15 14 13 17 17 N 1.34781 * 120.00031 * 180.02562 * 15 14 13 18 18 C 1.37095 * 120.00375 * 179.97438 * 17 15 14 19 19 H 1.08004 * 119.99508 * 359.97438 * 18 17 15 20 20 C 1.38945 * 120.00063 * 179.97438 * 18 17 15 21 21 N 1.31407 * 120.00528 * 359.97438 * 20 18 17 22 22 Si 1.86809 * 119.99848 * 179.97438 * 20 18 17 23 23 H 1.48495 * 109.46996 * 90.00021 * 22 20 18 24 24 H 1.48496 * 109.47060 * 210.00242 * 22 20 18 25 25 H 1.48497 * 109.47092 * 330.00366 * 22 20 18 26 26 C 1.47843 * 108.57223 * 0.99081 * 13 12 11 27 27 N 1.46900 * 109.47635 * 64.92720 * 3 2 1 28 28 C 1.46900 * 110.99733 * 275.51083 * 27 3 2 29 29 C 1.46900 * 110.99702 * 39.46235 * 27 3 2 30 30 H 1.08999 * 109.47255 * 281.77451 * 1 2 3 31 31 H 1.09001 * 109.46641 * 41.77703 * 1 2 3 32 32 H 1.09003 * 109.46649 * 161.77600 * 1 2 3 33 33 H 1.08996 * 109.47101 * 239.99466 * 2 1 3 34 34 H 1.09006 * 109.46806 * 119.99649 * 2 1 3 35 35 H 1.09004 * 109.47516 * 270.00340 * 8 7 5 36 36 H 1.09011 * 109.47137 * 30.00285 * 8 7 5 37 37 H 1.09001 * 109.47693 * 149.99942 * 8 7 5 38 38 H 1.08999 * 110.69482 * 87.90680 * 11 9 7 39 39 H 1.08996 * 110.84280 * 324.75064 * 11 9 7 40 40 H 1.08996 * 109.88425 * 262.87618 * 12 11 9 41 41 H 1.09000 * 109.88193 * 141.69145 * 12 11 9 42 42 H 1.09001 * 109.47500 * 169.15499 * 14 13 12 43 43 H 1.09010 * 109.46769 * 289.15445 * 14 13 12 44 44 H 0.97005 * 119.99648 * 0.02562 * 17 15 14 45 45 H 0.96996 * 120.00466 * 179.97438 * 21 20 18 46 46 H 1.09001 * 110.37399 * 94.73134 * 26 13 12 47 47 H 1.09001 * 110.37554 * 216.96694 * 26 13 12 48 48 H 1.09000 * 109.47417 * 67.74071 * 28 27 3 49 49 H 1.09001 * 109.47206 * 187.74344 * 28 27 3 50 50 H 1.09001 * 109.47033 * 307.74033 * 28 27 3 51 51 H 1.08993 * 109.47065 * 51.51117 * 29 27 3 52 52 H 1.09001 * 109.46885 * 171.50822 * 29 27 3 53 53 H 1.09002 * 109.47138 * 291.50296 * 29 27 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6065 1.9812 -0.8426 5 6 3.5420 1.4442 -0.1220 6 8 4.2303 1.6058 0.8634 7 7 4.1205 1.2663 -1.3262 8 6 3.2892 1.0707 -2.5165 9 6 5.5807 1.2686 -1.4450 10 1 6.0485 1.4928 -0.4863 11 6 6.0516 2.2650 -2.5411 12 6 7.4032 1.6727 -2.9927 13 7 7.3938 0.2419 -2.6371 14 6 7.6295 -0.5963 -3.8203 15 6 8.8320 -0.0818 -4.5688 16 8 9.4333 0.8879 -4.1574 17 7 9.2388 -0.6987 -5.6960 18 6 10.3325 -0.2304 -6.3773 19 1 10.8678 0.6331 -6.0109 20 6 10.7521 -0.8667 -7.5390 21 7 10.1011 -1.9177 -7.9845 22 14 12.2419 -0.2282 -8.4677 23 1 13.4667 -0.8942 -7.9564 24 1 12.0862 -0.5217 -9.9150 25 1 12.3571 1.2390 -8.2698 26 6 6.0935 -0.0791 -2.0109 27 7 1.6499 2.0999 1.2544 28 6 0.2854 2.6367 1.1652 29 6 1.7807 1.1810 2.3931 30 1 -0.3634 0.2097 1.0060 31 1 -0.3632 0.7664 -0.6847 32 1 -0.3633 -0.9762 -0.3214 33 1 1.8934 -0.5139 -0.8899 34 1 1.8934 -0.5138 0.8901 35 1 3.0973 0.0066 -2.6549 36 1 2.3431 1.5970 -2.3895 37 1 3.8085 1.4629 -3.3910 38 1 6.1884 3.2620 -2.1223 39 1 5.3455 2.2905 -3.3711 40 1 8.2200 2.1776 -2.4771 41 1 7.5159 1.7861 -4.0709 42 1 7.8091 -1.6248 -3.5071 43 1 6.7549 -0.5618 -4.4700 44 1 8.7573 -1.4736 -6.0256 45 1 10.3939 -2.3617 -8.7956 46 1 5.3989 -0.4667 -2.7562 47 1 6.2280 -0.8020 -1.2062 48 1 -0.4258 1.8130 1.1026 49 1 0.0715 3.2348 2.0510 50 1 0.1978 3.2606 0.2758 51 1 2.7759 0.7365 2.3887 52 1 1.6324 1.7308 3.3225 53 1 1.0308 0.3940 2.3129 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001494862113.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:13:23 Heat of formation + Delta-G solvation = -56.134797 kcal Electronic energy + Delta-G solvation = -30899.411866 eV Core-core repulsion = 26806.308171 eV Total energy + Delta-G solvation = -4093.103695 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.226 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.68907 -40.73428 -39.38821 -38.29042 -36.42642 -35.82256 -33.43223 -33.24238 -32.32389 -30.07958 -29.18608 -28.59507 -28.22425 -27.48652 -25.99456 -23.87195 -23.15824 -22.36544 -21.41856 -20.90133 -19.97843 -19.74926 -18.59179 -17.65524 -17.59489 -17.15560 -16.78746 -16.49485 -16.44721 -16.07662 -15.79267 -15.69463 -15.28660 -15.18343 -14.68909 -14.59827 -14.36522 -14.03493 -13.75069 -13.65892 -13.59332 -13.48150 -13.42799 -13.31168 -13.02306 -12.94352 -12.86862 -12.57644 -12.53589 -12.51047 -12.43398 -12.40950 -12.24335 -12.16667 -12.11443 -11.75535 -11.68296 -11.42787 -10.66661 -10.25110 -10.00089 -9.66524 -9.27000 -9.11429 -8.47144 -5.95494 1.37350 1.41642 1.53905 1.60239 1.79415 2.03346 2.28765 2.88175 3.07284 3.20103 3.27354 3.44638 3.65048 3.73750 3.82989 3.91161 4.02291 4.15220 4.20579 4.26467 4.29735 4.34604 4.40525 4.43613 4.47502 4.49412 4.54280 4.62523 4.66569 4.68682 4.73738 4.78480 4.81200 4.91429 5.00488 5.03328 5.04468 5.05209 5.11063 5.16671 5.24147 5.36966 5.40959 5.47268 5.86588 5.95779 6.00289 6.10284 6.12152 6.41922 6.59591 7.12100 7.20611 7.54751 8.10096 8.70137 Molecular weight = 340.23amu Principal moments of inertia in cm(-1) A = 0.030641 B = 0.001957 C = 0.001910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 913.577447 B =14303.760670 C =14655.594545 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.148 4.148 3 C 0.074 3.926 4 H 0.124 0.876 5 C 0.516 3.484 6 O -0.570 6.570 7 N -0.602 5.602 8 C 0.061 3.939 9 C 0.141 3.859 10 H 0.087 0.913 11 C -0.144 4.144 12 C 0.072 3.928 13 N -0.528 5.528 14 C 0.054 3.946 15 C 0.437 3.563 16 O -0.616 6.616 17 N -0.571 5.571 18 C -0.331 4.331 19 H 0.078 0.922 20 C -0.012 4.012 21 N -0.919 5.919 22 Si 0.992 3.008 23 H -0.273 1.273 24 H -0.270 1.270 25 H -0.273 1.273 26 C 0.043 3.957 27 N -0.548 5.548 28 C 0.011 3.989 29 C 0.027 3.973 30 H 0.060 0.940 31 H 0.072 0.928 32 H 0.067 0.933 33 H 0.083 0.917 34 H 0.062 0.938 35 H 0.076 0.924 36 H 0.097 0.903 37 H 0.079 0.921 38 H 0.077 0.923 39 H 0.091 0.909 40 H 0.053 0.947 41 H 0.044 0.956 42 H 0.108 0.892 43 H 0.075 0.925 44 H 0.397 0.603 45 H 0.278 0.722 46 H 0.072 0.928 47 H 0.081 0.919 48 H 0.059 0.941 49 H 0.068 0.932 50 H 0.075 0.925 51 H 0.052 0.948 52 H 0.066 0.934 53 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.712 2.376 11.994 29.378 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.187 4.187 3 C -0.038 4.038 4 H 0.141 0.859 5 C 0.305 3.695 6 O -0.447 6.447 7 N -0.335 5.335 8 C -0.080 4.080 9 C 0.036 3.964 10 H 0.105 0.895 11 C -0.183 4.183 12 C -0.056 4.056 13 N -0.253 5.253 14 C -0.077 4.077 15 C 0.225 3.775 16 O -0.502 6.502 17 N -0.208 5.208 18 C -0.461 4.461 19 H 0.096 0.904 20 C -0.212 4.212 21 N -0.560 5.560 22 Si 0.816 3.184 23 H -0.198 1.198 24 H -0.194 1.194 25 H -0.198 1.198 26 C -0.085 4.085 27 N -0.272 5.272 28 C -0.136 4.136 29 C -0.121 4.121 30 H 0.079 0.921 31 H 0.091 0.909 32 H 0.086 0.914 33 H 0.102 0.898 34 H 0.081 0.919 35 H 0.094 0.906 36 H 0.115 0.885 37 H 0.097 0.903 38 H 0.095 0.905 39 H 0.109 0.891 40 H 0.072 0.928 41 H 0.063 0.937 42 H 0.126 0.874 43 H 0.093 0.907 44 H 0.231 0.769 45 H 0.087 0.913 46 H 0.090 0.910 47 H 0.099 0.901 48 H 0.077 0.923 49 H 0.087 0.913 50 H 0.094 0.906 51 H 0.071 0.929 52 H 0.085 0.915 53 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -25.215 3.279 13.039 28.575 hybrid contribution 0.076 -0.654 -1.315 1.471 sum -25.139 2.624 11.724 27.862 Atomic orbital electron populations 1.22031 0.93159 1.03225 1.02363 1.22123 0.98192 0.94683 1.03711 1.21819 0.90127 0.96716 0.95111 0.85872 1.21221 0.91474 0.74779 0.82076 1.90657 1.65942 1.49988 1.38149 1.47786 1.05545 1.71582 1.08571 1.22201 0.95694 1.03175 0.86955 1.21940 0.80514 0.94600 0.99364 0.89465 1.23228 0.96903 0.99391 0.98798 1.22461 0.96002 0.87770 0.99380 1.63275 1.31894 1.04117 1.26042 1.21982 0.95444 0.98868 0.91375 1.20716 0.88500 0.85711 0.82611 1.90521 1.60015 1.30319 1.69344 1.41910 1.27535 1.29084 1.22284 1.19637 1.06726 1.13456 1.06287 0.90369 1.26016 1.01652 0.96008 0.97555 1.69661 1.41587 1.20553 1.24164 0.84946 0.77657 0.78394 0.77452 1.19828 1.19445 1.19820 1.23336 0.88804 0.97292 0.99114 1.61717 1.26393 1.36764 1.02346 1.22823 0.87217 1.00267 1.03298 1.22416 1.01053 0.95277 0.93309 0.92093 0.90943 0.91372 0.89841 0.91894 0.90571 0.88467 0.90280 0.90474 0.89086 0.92843 0.93736 0.87428 0.90688 0.76940 0.91281 0.90963 0.90064 0.92298 0.91273 0.90631 0.92910 0.91520 0.93478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.98 8.15 71.98 0.59 -0.39 16 2 C -0.15 -1.61 4.79 30.59 0.15 -1.46 16 3 C 0.07 1.08 1.57 44.17 0.07 1.15 16 4 H 0.12 1.22 5.78 -2.39 -0.01 1.21 16 5 C 0.52 11.66 6.84 87.66 0.60 12.26 16 6 O -0.57 -18.31 14.31 -3.03 -0.04 -18.35 16 7 N -0.60 -11.67 2.91 -814.27 -2.37 -14.04 16 8 C 0.06 0.67 8.49 127.77 1.09 1.76 16 9 C 0.14 3.54 3.46 46.48 0.16 3.70 16 10 H 0.09 2.73 7.02 -2.39 -0.02 2.72 16 11 C -0.14 -3.68 6.49 31.88 0.21 -3.47 16 12 C 0.07 2.51 5.03 86.65 0.44 2.94 16 13 N -0.53 -17.76 5.21 -890.08 -4.64 -22.40 16 14 C 0.05 1.88 5.55 85.56 0.47 2.35 16 15 C 0.44 20.69 7.05 87.66 0.62 21.31 16 16 O -0.62 -33.76 13.38 -3.07 -0.04 -33.80 16 17 N -0.57 -29.02 5.29 -306.98 -1.62 -30.64 16 18 C -0.33 -18.71 9.68 84.04 0.81 -17.90 16 19 H 0.08 4.72 7.16 -2.91 -0.02 4.70 16 20 C -0.01 -0.66 5.50 84.93 0.47 -0.19 16 21 N -0.92 -49.06 13.05 21.66 0.28 -48.77 16 22 Si 0.99 42.81 29.55 68.60 2.03 44.84 16 23 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 24 H -0.27 -10.97 7.11 99.48 0.71 -10.26 16 25 H -0.27 -11.87 7.11 99.48 0.71 -11.17 16 26 C 0.04 1.08 6.32 86.77 0.55 1.63 16 27 N -0.55 -9.26 4.62 -927.73 -4.28 -13.54 16 28 C 0.01 0.11 8.93 127.69 1.14 1.25 16 29 C 0.03 0.46 7.96 127.69 1.02 1.48 16 30 H 0.06 0.42 4.88 -2.39 -0.01 0.41 16 31 H 0.07 0.31 7.56 -2.39 -0.02 0.29 16 32 H 0.07 0.37 8.14 -2.39 -0.02 0.36 16 33 H 0.08 0.77 6.88 -2.39 -0.02 0.76 16 34 H 0.06 0.90 6.12 -2.38 -0.01 0.88 16 35 H 0.08 0.62 7.57 -2.39 -0.02 0.61 16 36 H 0.10 0.60 5.95 -2.38 -0.01 0.58 16 37 H 0.08 0.90 5.94 -2.39 -0.01 0.88 16 38 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 39 H 0.09 1.93 5.97 -2.39 -0.01 1.92 16 40 H 0.05 2.15 7.96 -2.39 -0.02 2.13 16 41 H 0.04 1.76 6.12 -2.39 -0.01 1.75 16 42 H 0.11 3.36 8.14 -2.39 -0.02 3.34 16 43 H 0.08 2.19 7.82 -2.38 -0.02 2.17 16 44 H 0.40 19.05 7.90 -92.70 -0.73 18.32 16 45 H 0.28 13.88 8.31 -92.71 -0.77 13.11 16 46 H 0.07 1.48 6.74 -2.39 -0.02 1.46 16 47 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 48 H 0.06 0.42 4.45 -2.39 -0.01 0.41 16 49 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 50 H 0.07 0.63 7.86 -2.39 -0.02 0.61 16 51 H 0.05 1.20 6.38 -2.39 -0.02 1.19 16 52 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 53 H 0.05 0.61 5.31 -2.39 -0.01 0.59 16 Total: -1.00 -74.29 393.99 -2.12 -76.40 By element: Atomic # 1 Polarization: 33.69 SS G_CDS: 0.20 Total: 33.89 kcal Atomic # 6 Polarization: 18.04 SS G_CDS: 8.37 Total: 26.41 kcal Atomic # 7 Polarization: -116.77 SS G_CDS: -12.63 Total: -129.40 kcal Atomic # 8 Polarization: -52.07 SS G_CDS: -0.08 Total: -52.15 kcal Atomic # 14 Polarization: 42.81 SS G_CDS: 2.03 Total: 44.84 kcal Total: -74.29 -2.12 -76.40 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001494862113.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.269 kcal (2) G-P(sol) polarization free energy of solvation -74.289 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.404 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds