Wall clock time and date at job start Sat Apr 11 2020 06:13:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.47207 * 2 1 4 4 H 1.09000 * 109.46765 * 53.89653 * 3 2 1 5 5 C 1.50701 * 109.47183 * 173.89557 * 3 2 1 6 6 O 1.21279 * 119.99733 * 105.36666 * 5 3 2 7 7 N 1.34778 * 120.00190 * 285.37389 * 5 3 2 8 8 C 1.46492 * 119.99979 * 184.71833 * 7 5 3 9 9 C 1.46503 * 119.99790 * 4.70908 * 7 5 3 10 10 H 1.09000 * 110.78752 * 354.25032 * 9 7 5 11 11 C 1.54599 * 110.72025 * 117.49804 * 9 7 5 12 12 C 1.53988 * 105.14076 * 140.31699 * 11 9 7 13 13 N 1.47907 * 107.22520 * 1.12439 * 12 11 9 14 14 C 1.46905 * 111.00194 * 214.25927 * 13 12 11 15 15 C 1.50694 * 109.47174 * 175.93715 * 14 13 12 16 16 O 1.21291 * 119.99934 * 6.11108 * 15 14 13 17 17 N 1.34777 * 119.99724 * 186.11035 * 15 14 13 18 18 C 1.37108 * 119.99714 * 180.02562 * 17 15 14 19 19 H 1.08001 * 119.99857 * 359.97438 * 18 17 15 20 20 C 1.38947 * 119.99667 * 179.97438 * 18 17 15 21 21 N 1.31414 * 120.00076 * 359.97438 * 20 18 17 22 22 Si 1.86807 * 119.99886 * 179.97438 * 20 18 17 23 23 H 1.48495 * 109.46941 * 89.99718 * 22 20 18 24 24 H 1.48494 * 109.47159 * 209.99630 * 22 20 18 25 25 H 1.48494 * 109.46599 * 330.00008 * 22 20 18 26 26 C 1.48813 * 105.67611 * 334.90456 * 13 12 11 27 27 N 1.46898 * 109.47351 * 293.90064 * 3 2 1 28 28 C 1.46905 * 110.99905 * 320.12165 * 27 3 2 29 29 C 1.46900 * 111.00421 * 84.07559 * 27 3 2 30 30 H 1.08991 * 109.46790 * 310.70085 * 1 2 3 31 31 H 1.09006 * 109.46944 * 70.69724 * 1 2 3 32 32 H 1.08996 * 109.46818 * 190.69244 * 1 2 3 33 33 H 1.09001 * 109.46811 * 240.00001 * 2 1 3 34 34 H 1.08996 * 109.46908 * 120.00165 * 2 1 3 35 35 H 1.09003 * 109.46758 * 264.89800 * 8 7 5 36 36 H 1.09003 * 109.47598 * 24.89465 * 8 7 5 37 37 H 1.09004 * 109.47157 * 144.89877 * 8 7 5 38 38 H 1.08997 * 110.30947 * 21.39742 * 11 9 7 39 39 H 1.08998 * 110.39103 * 259.27230 * 11 9 7 40 40 H 1.08993 * 109.92304 * 120.57579 * 12 11 9 41 41 H 1.09004 * 109.91840 * 241.67678 * 12 11 9 42 42 H 1.09003 * 109.46349 * 295.93872 * 14 13 12 43 43 H 1.09000 * 109.46960 * 55.93029 * 14 13 12 44 44 H 0.96999 * 120.00236 * 359.97438 * 17 15 14 45 45 H 0.97004 * 119.99500 * 180.02562 * 21 20 18 46 46 H 1.08996 * 110.52043 * 280.54517 * 26 13 12 47 47 H 1.09002 * 110.83817 * 157.56009 * 26 13 12 48 48 H 1.09000 * 109.46714 * 59.99975 * 28 27 3 49 49 H 1.08997 * 109.47367 * 179.97438 * 28 27 3 50 50 H 1.09003 * 109.47397 * 300.00506 * 28 27 3 51 51 H 1.09004 * 109.46348 * 66.15126 * 29 27 3 52 52 H 1.08997 * 109.46976 * 186.15128 * 29 27 3 53 53 H 1.08999 * 109.47138 * 306.15939 * 29 27 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5903 1.9868 0.8303 5 6 3.5395 1.4452 0.1511 6 8 4.2448 1.6885 -0.8050 7 7 4.0966 1.1770 1.3487 8 6 5.5477 1.2807 1.5211 9 6 3.2510 0.7821 2.4780 10 1 2.1958 0.8509 2.2138 11 6 3.6041 -0.6464 2.9524 12 6 3.5300 -0.5895 4.4894 13 7 3.1296 0.7858 4.8580 14 6 3.7678 1.2011 6.1143 15 6 3.4168 2.6375 6.4051 16 8 2.6181 3.2207 5.7030 17 7 3.9905 3.2740 7.4454 18 6 3.6708 4.5807 7.7104 19 1 2.9596 5.1000 7.0852 20 6 4.2618 5.2367 8.7832 21 7 5.1269 4.6046 9.5442 22 14 3.8268 7.0172 9.1438 23 1 2.6691 7.0656 10.0725 24 1 4.9912 7.6945 9.7686 25 1 3.4742 7.7068 7.8768 26 6 3.5618 1.6479 3.7247 27 7 1.6743 2.0912 -1.2662 28 6 1.8364 1.1676 -2.3970 29 6 0.3049 2.6200 -1.2105 30 1 -0.3632 0.6701 0.7790 31 1 -0.3633 0.3397 -0.9700 32 1 -0.3633 -1.0098 0.1907 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8899 35 1 6.0009 0.2988 1.3840 36 1 5.9527 1.9739 0.7839 37 1 5.7692 1.6462 2.5239 38 1 4.6110 -0.9134 2.6317 39 1 2.8815 -1.3646 2.5651 40 1 2.7890 -1.3017 4.8521 41 1 4.5060 -0.8192 4.9170 42 1 3.4136 0.5685 6.9282 43 1 4.8495 1.1028 6.0221 44 1 4.6290 2.8074 8.0072 45 1 5.5392 5.0625 10.2934 46 1 4.6292 1.8586 3.7904 47 1 2.9886 2.5747 3.7019 48 1 1.1946 0.2987 -2.2512 49 1 1.5584 1.6731 -3.3218 50 1 2.8760 0.8453 -2.4569 51 1 0.2577 3.4302 -0.4828 52 1 0.0209 2.9971 -2.1930 53 1 -0.3797 1.8253 -0.9143 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001494862123.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:13:34 Heat of formation + Delta-G solvation = -51.971139 kcal Electronic energy + Delta-G solvation = -31641.719286 eV Core-core repulsion = 27548.796141 eV Total energy + Delta-G solvation = -4092.923145 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.226 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.79102 -40.55084 -39.31314 -38.54206 -36.33498 -35.81101 -33.30905 -33.28729 -32.25871 -30.21679 -29.51981 -28.66712 -28.25804 -27.26833 -25.98158 -23.82854 -23.00179 -22.10290 -21.89413 -20.98363 -19.92445 -19.77578 -18.62595 -17.82068 -17.63893 -16.81321 -16.68941 -16.56197 -16.20812 -16.09065 -15.96403 -15.72728 -15.63622 -15.10537 -14.93035 -14.48539 -14.33209 -14.01413 -13.85995 -13.68481 -13.54674 -13.43876 -13.24168 -13.18672 -13.04035 -12.91857 -12.88149 -12.69439 -12.61208 -12.53160 -12.41680 -12.40767 -12.24295 -12.18116 -12.11242 -11.67678 -11.63044 -11.46355 -10.72148 -10.25747 -10.00726 -9.71049 -9.32593 -9.10407 -8.46968 -5.95061 1.37118 1.41179 1.53313 1.53462 1.82127 2.05664 2.28238 2.82733 3.01351 3.20462 3.29506 3.46746 3.63359 3.70760 3.81609 3.89399 4.02222 4.16682 4.27443 4.29583 4.30439 4.31684 4.34996 4.42206 4.45811 4.49660 4.53674 4.57965 4.62185 4.70886 4.73622 4.78888 4.84524 4.87111 4.96235 4.97955 5.04753 5.08665 5.10581 5.14292 5.21213 5.36098 5.40829 5.41644 5.81301 5.91337 5.95344 6.09281 6.11650 6.34922 6.60685 7.13344 7.13682 7.56839 8.12536 8.70499 Molecular weight = 340.23amu Principal moments of inertia in cm(-1) A = 0.014371 B = 0.002636 C = 0.002491 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1947.899447 B =10619.223630 C =11238.437123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.150 4.150 3 C 0.068 3.932 4 H 0.101 0.899 5 C 0.520 3.480 6 O -0.562 6.562 7 N -0.605 5.605 8 C 0.080 3.920 9 C 0.136 3.864 10 H 0.114 0.886 11 C -0.130 4.130 12 C 0.035 3.965 13 N -0.506 5.506 14 C 0.050 3.950 15 C 0.439 3.561 16 O -0.614 6.614 17 N -0.575 5.575 18 C -0.330 4.330 19 H 0.078 0.922 20 C -0.012 4.012 21 N -0.921 5.921 22 Si 0.989 3.011 23 H -0.270 1.270 24 H -0.272 1.272 25 H -0.274 1.274 26 C 0.032 3.968 27 N -0.547 5.547 28 C 0.024 3.976 29 C 0.003 3.997 30 H 0.060 0.940 31 H 0.069 0.931 32 H 0.074 0.926 33 H 0.077 0.923 34 H 0.084 0.916 35 H 0.073 0.927 36 H 0.063 0.937 37 H 0.071 0.929 38 H 0.083 0.917 39 H 0.101 0.899 40 H 0.099 0.901 41 H 0.058 0.942 42 H 0.115 0.885 43 H 0.068 0.932 44 H 0.396 0.604 45 H 0.277 0.723 46 H 0.040 0.960 47 H 0.067 0.933 48 H 0.050 0.950 49 H 0.072 0.928 50 H 0.055 0.945 51 H 0.059 0.941 52 H 0.077 0.923 53 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.143 -15.557 -16.513 23.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.189 4.189 3 C -0.045 4.045 4 H 0.118 0.882 5 C 0.308 3.692 6 O -0.439 6.439 7 N -0.338 5.338 8 C -0.062 4.062 9 C 0.032 3.968 10 H 0.132 0.868 11 C -0.169 4.169 12 C -0.093 4.093 13 N -0.231 5.231 14 C -0.082 4.082 15 C 0.227 3.773 16 O -0.499 6.499 17 N -0.212 5.212 18 C -0.460 4.460 19 H 0.096 0.904 20 C -0.212 4.212 21 N -0.562 5.562 22 Si 0.813 3.187 23 H -0.196 1.196 24 H -0.196 1.196 25 H -0.199 1.199 26 C -0.097 4.097 27 N -0.271 5.271 28 C -0.123 4.123 29 C -0.144 4.144 30 H 0.079 0.921 31 H 0.087 0.913 32 H 0.093 0.907 33 H 0.096 0.904 34 H 0.103 0.897 35 H 0.092 0.908 36 H 0.082 0.918 37 H 0.090 0.910 38 H 0.102 0.898 39 H 0.119 0.881 40 H 0.117 0.883 41 H 0.077 0.923 42 H 0.133 0.867 43 H 0.085 0.915 44 H 0.229 0.771 45 H 0.087 0.913 46 H 0.058 0.942 47 H 0.085 0.915 48 H 0.068 0.932 49 H 0.091 0.909 50 H 0.074 0.926 51 H 0.078 0.922 52 H 0.096 0.904 53 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -5.414 -14.533 -17.307 23.239 hybrid contribution 0.885 0.483 0.950 1.385 sum -4.529 -14.050 -16.357 22.034 Atomic orbital electron populations 1.22080 0.93482 1.03276 1.02466 1.22239 0.98169 0.94287 1.04207 1.21728 0.91099 0.97023 0.94601 0.88163 1.20981 0.91269 0.75078 0.81876 1.90625 1.64615 1.49438 1.39263 1.47866 1.07940 1.67927 1.10039 1.21674 0.79641 1.02602 1.02313 1.22210 0.95634 0.94570 0.84426 0.86840 1.22776 1.03891 0.95586 0.94657 1.23020 1.01090 0.89887 0.95265 1.64514 1.54982 1.02913 1.00689 1.21985 0.98208 0.92972 0.95010 1.20764 0.84216 0.89761 0.82578 1.90475 1.38680 1.69473 1.51322 1.41939 1.40078 1.11941 1.27252 1.19630 1.24738 0.88798 1.12803 0.90368 1.25993 0.95855 1.03985 0.95372 1.69669 1.28858 1.39231 1.18433 0.84975 0.78105 0.77209 0.78372 1.19582 1.19644 1.19883 1.23509 0.98520 0.97494 0.90154 1.61735 1.26081 1.37199 1.02120 1.22495 1.01564 0.95230 0.93046 1.22925 0.87717 1.00521 1.03249 0.92116 0.91280 0.90696 0.90417 0.89738 0.90846 0.91791 0.91002 0.89814 0.88063 0.88295 0.92338 0.86718 0.91450 0.77059 0.91348 0.94173 0.91469 0.93152 0.90919 0.92587 0.92177 0.90402 0.91519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.88 8.14 71.98 0.59 -1.29 16 2 C -0.15 -2.31 4.44 30.60 0.14 -2.18 16 3 C 0.07 1.47 1.48 44.17 0.07 1.54 16 4 H 0.10 2.28 6.78 -2.39 -0.02 2.26 16 5 C 0.52 14.15 6.89 87.66 0.60 14.75 16 6 O -0.56 -19.08 14.51 -3.03 -0.04 -19.12 16 7 N -0.60 -14.66 2.88 -815.86 -2.35 -17.01 16 8 C 0.08 1.83 9.62 127.77 1.23 3.06 16 9 C 0.14 3.02 2.46 46.20 0.11 3.14 16 10 H 0.11 2.42 4.81 -2.39 -0.01 2.41 16 11 C -0.13 -2.11 6.33 31.47 0.20 -1.91 16 12 C 0.03 0.66 6.69 86.44 0.58 1.24 16 13 N -0.51 -14.71 5.13 -886.80 -4.55 -19.26 16 14 C 0.05 1.61 5.33 85.55 0.46 2.07 16 15 C 0.44 20.24 7.42 87.66 0.65 20.89 16 16 O -0.61 -32.77 13.84 -3.06 -0.04 -32.81 16 17 N -0.57 -28.94 5.29 -306.99 -1.62 -30.57 16 18 C -0.33 -18.56 9.68 84.04 0.81 -17.75 16 19 H 0.08 4.70 7.16 -2.91 -0.02 4.68 16 20 C -0.01 -0.66 5.50 84.93 0.47 -0.19 16 21 N -0.92 -49.39 13.05 21.66 0.28 -49.11 16 22 Si 0.99 42.90 29.55 68.60 2.03 44.92 16 23 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 24 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16 25 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 26 C 0.03 0.98 5.09 86.59 0.44 1.42 16 27 N -0.55 -12.24 4.57 -927.72 -4.24 -16.48 16 28 C 0.02 0.47 8.17 127.69 1.04 1.51 16 29 C 0.00 0.05 9.18 127.69 1.17 1.22 16 30 H 0.06 0.79 7.89 -2.39 -0.02 0.77 16 31 H 0.07 0.78 4.84 -2.38 -0.01 0.77 16 32 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 33 H 0.08 1.22 5.98 -2.39 -0.01 1.21 16 34 H 0.08 1.19 5.20 -2.39 -0.01 1.18 16 35 H 0.07 1.37 7.75 -2.39 -0.02 1.35 16 36 H 0.06 1.67 7.34 -2.39 -0.02 1.65 16 37 H 0.07 1.64 5.87 -2.39 -0.01 1.63 16 38 H 0.08 1.25 7.05 -2.39 -0.02 1.23 16 39 H 0.10 1.19 7.32 -2.39 -0.02 1.18 16 40 H 0.10 1.59 8.14 -2.39 -0.02 1.57 16 41 H 0.06 1.00 7.67 -2.38 -0.02 0.98 16 42 H 0.11 3.25 8.14 -2.39 -0.02 3.23 16 43 H 0.07 1.94 7.98 -2.39 -0.02 1.93 16 44 H 0.40 18.94 7.90 -92.71 -0.73 18.20 16 45 H 0.28 13.94 8.31 -92.71 -0.77 13.17 16 46 H 0.04 1.26 5.75 -2.39 -0.01 1.25 16 47 H 0.07 2.67 6.43 -2.39 -0.02 2.66 16 48 H 0.05 0.75 5.05 -2.39 -0.01 0.74 16 49 H 0.07 1.25 8.05 -2.39 -0.02 1.23 16 50 H 0.06 1.34 6.69 -2.39 -0.02 1.32 16 51 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 52 H 0.08 1.16 8.01 -2.39 -0.02 1.15 16 53 H 0.07 0.91 3.89 -2.39 -0.01 0.90 16 Total: -1.00 -72.10 392.87 -1.78 -73.87 By element: Atomic # 1 Polarization: 37.83 SS G_CDS: 0.21 Total: 38.04 kcal Atomic # 6 Polarization: 18.97 SS G_CDS: 8.56 Total: 27.52 kcal Atomic # 7 Polarization: -119.95 SS G_CDS: -12.48 Total: -132.43 kcal Atomic # 8 Polarization: -51.84 SS G_CDS: -0.09 Total: -51.93 kcal Atomic # 14 Polarization: 42.90 SS G_CDS: 2.03 Total: 44.92 kcal Total: -72.10 -1.78 -73.87 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001494862123.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.901 kcal (2) G-P(sol) polarization free energy of solvation -72.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.196 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.775 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.873 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds