Wall clock time and date at job start Sat Apr 11 2020 06:13:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53001 * 109.47375 * 2 1 4 4 C 1.52996 * 109.47375 * 180.02562 * 3 2 1 5 5 H 1.09005 * 109.47109 * 304.99570 * 4 3 2 6 6 N 1.46496 * 109.47640 * 64.99424 * 4 3 2 7 7 C 1.34777 * 119.99614 * 59.99767 * 6 4 3 8 8 N 1.34784 * 119.99964 * 180.02562 * 7 6 4 9 9 O 1.21588 * 120.00178 * 0.02562 * 7 6 4 10 10 C 1.50703 * 109.47257 * 184.99959 * 4 3 2 11 11 O 1.21278 * 119.99864 * 259.99820 * 10 4 3 12 12 N 1.34771 * 120.00112 * 79.99303 * 10 4 3 13 13 C 1.46926 * 120.63202 * 359.72181 * 12 10 4 14 14 C 1.52757 * 109.01187 * 233.57960 * 13 12 10 15 15 C 1.53035 * 109.38595 * 305.59172 * 14 13 12 16 16 C 1.53001 * 109.46337 * 181.25598 * 15 14 13 17 17 C 1.53004 * 109.46715 * 64.93038 * 16 15 14 18 18 N 1.46497 * 109.46821 * 180.02562 * 17 16 15 19 19 C 1.36942 * 120.00104 * 180.02562 * 18 17 16 20 20 H 1.08003 * 119.99661 * 359.97438 * 19 18 17 21 21 C 1.38816 * 120.00082 * 180.02562 * 19 18 17 22 22 N 1.31619 * 120.00003 * 359.97438 * 21 19 18 23 23 Si 1.86803 * 119.99700 * 179.97438 * 21 19 18 24 24 H 1.48500 * 109.46781 * 89.99968 * 23 21 19 25 25 H 1.48499 * 109.46719 * 209.99645 * 23 21 19 26 26 H 1.48501 * 109.46968 * 330.00141 * 23 21 19 27 27 C 1.53045 * 109.53702 * 61.23516 * 15 14 13 28 28 C 1.46928 * 120.63081 * 180.02562 * 12 10 4 29 29 H 1.09008 * 109.46932 * 60.00753 * 1 2 3 30 30 H 1.08996 * 109.47239 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47538 * 300.00583 * 1 2 3 32 32 H 1.09001 * 109.47538 * 239.99417 * 2 1 3 33 33 H 1.09004 * 109.47191 * 119.99682 * 2 1 3 34 34 H 1.09001 * 109.47263 * 59.99248 * 3 2 1 35 35 H 1.09004 * 109.46701 * 299.99982 * 3 2 1 36 36 H 0.96996 * 120.00499 * 240.00344 * 6 4 3 37 37 H 0.97000 * 119.99339 * 0.02562 * 8 7 6 38 38 H 0.96995 * 120.00015 * 179.72857 * 8 7 6 39 39 H 1.08999 * 109.58891 * 353.42047 * 13 12 10 40 40 H 1.09004 * 109.58390 * 113.84020 * 13 12 10 41 41 H 1.08999 * 109.56909 * 185.55073 * 14 13 12 42 42 H 1.09005 * 109.35564 * 65.50338 * 14 13 12 43 43 H 1.09003 * 109.45918 * 301.21877 * 15 14 13 44 44 H 1.08994 * 109.47044 * 184.93037 * 16 15 14 45 45 H 1.08996 * 109.46845 * 304.93494 * 16 15 14 46 46 H 1.08998 * 109.46931 * 300.00047 * 17 16 15 47 47 H 1.08996 * 109.47092 * 60.00607 * 17 16 15 48 48 H 0.97005 * 120.00598 * 0.02562 * 18 17 16 49 49 H 0.96994 * 119.99784 * 180.02562 * 22 21 19 50 50 H 1.09007 * 109.49596 * 178.68107 * 27 15 14 51 51 H 1.09004 * 109.52365 * 58.60668 * 27 15 14 52 52 H 1.08998 * 109.58595 * 246.15656 * 28 12 10 53 53 H 1.08998 * 109.58366 * 6.43902 * 28 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 1 3.9337 0.8529 0.8410 6 7 4.0579 0.8589 -1.2526 7 6 3.7318 1.4243 -2.4318 8 7 4.1802 0.8871 -3.5837 9 8 3.0331 2.4191 -2.4564 10 6 4.0724 2.8579 0.1232 11 8 4.4461 3.4571 -0.8628 12 7 4.1063 3.4578 1.3295 13 6 3.6512 2.7470 2.5322 14 6 2.6024 3.5978 3.2461 15 6 3.1770 4.9899 3.5180 16 6 2.1392 5.8336 4.2609 17 6 1.8796 5.2245 5.6403 18 7 0.8854 6.0320 6.3514 19 6 0.4923 5.6779 7.6144 20 1 0.9149 4.8031 8.0861 21 6 -0.4502 6.4428 8.2880 22 7 -0.9656 7.5086 7.7129 23 14 -0.9870 5.9592 10.0107 24 1 -0.1047 6.6179 11.0072 25 1 -2.3908 6.3904 10.2310 26 1 -0.8920 4.4851 10.1633 27 6 3.5289 5.6665 2.1911 28 6 4.5930 4.8374 1.4661 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3634 0.5139 0.8899 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 1.6766 1.9564 0.8899 35 1 1.6767 1.9563 -0.8900 36 1 4.6155 0.0655 -1.2330 37 1 4.7373 0.0933 -3.5640 38 1 3.9423 1.2918 -4.4325 39 1 3.2120 1.7910 2.2473 40 1 4.4968 2.5787 3.1991 41 1 2.3303 3.1258 4.1901 42 1 1.7182 3.6862 2.6148 43 1 4.0753 4.8990 4.1287 44 1 2.5137 6.8506 4.3774 45 1 1.2102 5.8515 3.6910 46 1 1.5052 4.2076 5.5237 47 1 2.8086 5.2067 6.2102 48 1 0.5055 6.8176 5.9276 49 1 -1.6238 8.0432 8.1838 50 1 3.9163 6.6670 2.3844 51 1 2.6361 5.7359 1.5696 52 1 5.5170 4.8434 2.0442 53 1 4.7773 5.2593 0.4781 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001495435260.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:13:46 Heat of formation + Delta-G solvation = -99.523568 kcal Electronic energy + Delta-G solvation = -30994.411300 eV Core-core repulsion = 26899.426127 eV Total energy + Delta-G solvation = -4094.985173 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.226 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.83084 -40.38990 -38.80078 -36.91751 -36.83323 -34.98565 -34.83578 -33.80083 -33.03098 -32.15835 -30.23858 -29.50799 -26.78245 -25.61736 -24.38471 -24.23620 -23.00098 -22.39858 -21.64720 -21.19926 -19.83106 -19.60296 -19.09300 -18.20644 -17.81900 -17.00443 -16.66857 -16.35870 -16.28197 -15.88252 -15.58985 -15.43503 -15.30184 -15.22307 -15.03326 -14.91247 -14.70047 -14.40823 -14.29340 -14.06197 -13.77797 -13.26777 -13.15049 -13.01845 -12.84337 -12.82835 -12.49676 -12.29086 -12.23049 -12.16578 -12.09694 -11.98189 -11.94331 -11.63335 -11.60321 -11.36997 -11.17442 -11.13028 -10.86834 -10.77481 -10.44493 -9.85037 -9.55565 -8.97510 -7.93870 -5.22967 1.48003 1.50446 1.58872 1.63468 1.82905 2.21632 2.47961 2.57475 3.39848 3.47133 3.68921 3.71160 3.79289 3.88630 3.95417 3.98932 4.15891 4.21865 4.26001 4.30610 4.37458 4.42550 4.54522 4.61884 4.62336 4.65696 4.76194 4.80732 4.85040 4.91889 4.98542 5.00179 5.04035 5.08528 5.11275 5.22515 5.26124 5.31801 5.34452 5.42839 5.47812 5.51289 5.51787 5.58600 5.66358 5.98942 6.12750 6.28762 6.47794 7.22405 7.27206 7.33926 7.87394 8.12217 8.33620 9.30144 Molecular weight = 340.23amu Principal moments of inertia in cm(-1) A = 0.017298 B = 0.002201 C = 0.002045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1618.313512 B =12716.963188 C =13689.891237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.107 4.107 3 C -0.132 4.132 4 C 0.158 3.842 5 H 0.153 0.847 6 N -0.719 5.719 7 C 0.700 3.300 8 N -0.855 5.855 9 O -0.620 6.620 10 C 0.492 3.508 11 O -0.560 6.560 12 N -0.610 5.610 13 C 0.105 3.895 14 C -0.132 4.132 15 C -0.071 4.071 16 C -0.110 4.110 17 C 0.153 3.847 18 N -0.752 5.752 19 C -0.243 4.243 20 H 0.079 0.921 21 C -0.083 4.083 22 N -0.973 5.973 23 Si 0.976 3.024 24 H -0.287 1.287 25 H -0.297 1.297 26 H -0.266 1.266 27 C -0.122 4.122 28 C 0.117 3.883 29 H 0.036 0.964 30 H 0.066 0.934 31 H 0.053 0.947 32 H 0.063 0.937 33 H 0.089 0.911 34 H 0.076 0.924 35 H 0.054 0.946 36 H 0.419 0.581 37 H 0.412 0.588 38 H 0.415 0.585 39 H 0.108 0.892 40 H 0.095 0.905 41 H 0.088 0.912 42 H 0.053 0.947 43 H 0.086 0.914 44 H 0.053 0.947 45 H 0.047 0.953 46 H 0.030 0.970 47 H 0.021 0.979 48 H 0.371 0.629 49 H 0.250 0.750 50 H 0.079 0.921 51 H 0.045 0.955 52 H 0.085 0.915 53 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.153 -22.435 -19.501 33.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.145 4.145 3 C -0.171 4.171 4 C 0.048 3.952 5 H 0.170 0.830 6 N -0.377 5.377 7 C 0.398 3.602 8 N -0.424 5.424 9 O -0.498 6.498 10 C 0.280 3.720 11 O -0.437 6.437 12 N -0.344 5.344 13 C -0.017 4.017 14 C -0.170 4.170 15 C -0.090 4.090 16 C -0.148 4.148 17 C 0.027 3.973 18 N -0.395 5.395 19 C -0.375 4.375 20 H 0.097 0.903 21 C -0.274 4.274 22 N -0.624 5.624 23 Si 0.805 3.195 24 H -0.214 1.214 25 H -0.224 1.224 26 H -0.190 1.190 27 C -0.160 4.160 28 C -0.006 4.006 29 H 0.055 0.945 30 H 0.085 0.915 31 H 0.072 0.928 32 H 0.082 0.918 33 H 0.107 0.893 34 H 0.094 0.906 35 H 0.073 0.927 36 H 0.256 0.744 37 H 0.242 0.758 38 H 0.247 0.753 39 H 0.126 0.874 40 H 0.113 0.887 41 H 0.107 0.893 42 H 0.072 0.928 43 H 0.104 0.896 44 H 0.072 0.928 45 H 0.066 0.934 46 H 0.048 0.952 47 H 0.039 0.961 48 H 0.202 0.798 49 H 0.059 0.941 50 H 0.098 0.902 51 H 0.064 0.936 52 H 0.104 0.896 53 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 14.794 -21.439 -19.745 32.686 hybrid contribution -0.510 0.530 0.260 0.780 sum 14.284 -20.909 -19.485 31.951 Atomic orbital electron populations 1.21774 0.96270 1.02051 1.01181 1.21414 0.95508 0.94382 1.03161 1.21987 0.92458 0.99535 1.03115 1.20867 0.95540 0.90789 0.88023 0.83005 1.44523 1.57137 1.32913 1.03148 1.16210 0.80050 0.82037 0.81913 1.42788 1.58121 1.34795 1.06711 1.90954 1.44143 1.28008 1.86742 1.21597 0.77799 0.90345 0.82290 1.90721 1.48681 1.66749 1.37566 1.48251 1.63964 1.14699 1.07530 1.21972 0.98299 0.95681 0.85704 1.21950 0.98220 0.95444 1.01343 1.20987 0.98214 0.94662 0.95173 1.21638 0.98875 0.99184 0.95061 1.20889 0.90986 0.94038 0.91417 1.42703 1.49005 1.31846 1.15917 1.19689 1.17356 1.07868 0.92548 0.90269 1.25654 1.00680 0.98163 1.02936 1.69834 1.33815 1.19469 1.39320 0.85094 0.76646 0.78132 0.79634 1.21394 1.22371 1.19016 1.21880 0.98632 0.99449 0.96055 1.21488 0.96896 0.81471 1.00746 0.94523 0.91450 0.92801 0.91802 0.89262 0.90580 0.92715 0.74372 0.75785 0.75282 0.87367 0.88711 0.89318 0.92845 0.89560 0.92829 0.93429 0.95183 0.96095 0.79820 0.94092 0.90209 0.93564 0.89649 0.91598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.25 9.91 71.98 0.71 -1.53 16 2 C -0.11 -1.27 5.82 30.59 0.18 -1.09 16 3 C -0.13 -2.32 4.21 30.59 0.13 -2.19 16 4 C 0.16 2.38 2.15 44.25 0.10 2.47 16 5 H 0.15 0.93 6.81 -2.38 -0.02 0.91 16 6 N -0.72 -9.63 4.66 -461.41 -2.15 -11.78 16 7 C 0.70 14.69 7.59 179.05 1.36 16.05 16 8 N -0.85 -9.91 8.88 -184.74 -1.64 -11.55 16 9 O -0.62 -20.56 13.03 18.47 0.24 -20.32 16 10 C 0.49 11.79 6.69 87.66 0.59 12.38 16 11 O -0.56 -19.08 13.09 19.44 0.25 -18.82 16 12 N -0.61 -12.28 2.98 -819.83 -2.44 -14.72 16 13 C 0.11 1.46 5.73 86.22 0.49 1.95 16 14 C -0.13 -2.58 5.13 30.53 0.16 -2.42 16 15 C -0.07 -1.64 2.15 -10.77 -0.02 -1.66 16 16 C -0.11 -3.46 4.80 30.60 0.15 -3.32 16 17 C 0.15 5.89 6.02 86.38 0.52 6.41 16 18 N -0.75 -38.93 5.60 -343.45 -1.92 -40.85 16 19 C -0.24 -13.66 9.99 84.03 0.84 -12.82 16 20 H 0.08 4.20 7.83 -2.91 -0.02 4.18 16 21 C -0.08 -4.81 5.50 84.86 0.47 -4.34 16 22 N -0.97 -60.80 13.06 21.65 0.28 -60.52 16 23 Si 0.98 46.25 29.55 68.60 2.03 48.28 16 24 H -0.29 -13.33 7.11 99.48 0.71 -12.62 16 25 H -0.30 -14.21 7.11 99.48 0.71 -13.51 16 26 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 27 C -0.12 -2.81 5.36 30.66 0.16 -2.64 16 28 C 0.12 2.55 6.43 86.35 0.56 3.10 16 29 H 0.04 0.64 8.14 -2.38 -0.02 0.62 16 30 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 31 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 32 H 0.06 0.73 7.75 -2.39 -0.02 0.71 16 33 H 0.09 0.60 8.14 -2.38 -0.02 0.59 16 34 H 0.08 1.34 6.95 -2.39 -0.02 1.32 16 35 H 0.05 1.47 6.04 -2.38 -0.01 1.46 16 36 H 0.42 1.95 8.84 -92.71 -0.82 1.13 16 37 H 0.41 1.39 8.84 -92.71 -0.82 0.57 16 38 H 0.42 4.72 8.93 -92.71 -0.83 3.89 16 39 H 0.11 0.96 4.82 -2.39 -0.01 0.95 16 40 H 0.09 0.96 8.14 -2.38 -0.02 0.94 16 41 H 0.09 1.72 6.50 -2.39 -0.02 1.70 16 42 H 0.05 1.21 8.14 -2.38 -0.02 1.20 16 43 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 44 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 45 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 46 H 0.03 1.12 6.53 -2.39 -0.02 1.10 16 47 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 48 H 0.37 20.67 7.67 -92.70 -0.71 19.96 16 49 H 0.25 15.14 8.31 -92.71 -0.77 14.36 16 50 H 0.08 1.74 8.14 -2.38 -0.02 1.72 16 51 H 0.05 1.25 8.14 -2.38 -0.02 1.23 16 52 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 53 H 0.07 1.77 7.00 -2.39 -0.02 1.75 16 Total: -1.00 -86.59 408.33 -1.20 -87.79 By element: Atomic # 1 Polarization: 34.37 SS G_CDS: -2.23 Total: 32.14 kcal Atomic # 6 Polarization: 3.97 SS G_CDS: 6.38 Total: 10.35 kcal Atomic # 7 Polarization: -131.54 SS G_CDS: -7.87 Total: -139.42 kcal Atomic # 8 Polarization: -39.63 SS G_CDS: 0.50 Total: -39.14 kcal Atomic # 14 Polarization: 46.25 SS G_CDS: 2.03 Total: 48.28 kcal Total: -86.59 -1.20 -87.79 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001495435260.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.734 kcal (2) G-P(sol) polarization free energy of solvation -86.593 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.327 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.790 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.524 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds