Wall clock time and date at job start Sat Apr 11 2020 06:13:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86806 * 119.99805 * 2 1 4 4 H 1.48504 * 109.47152 * 269.99746 * 3 2 1 5 5 H 1.48500 * 109.47129 * 29.99853 * 3 2 1 6 6 H 1.48501 * 109.47099 * 150.00281 * 3 2 1 7 7 C 1.38813 * 120.00528 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00465 * 179.97438 * 7 2 1 9 9 N 1.36936 * 119.99375 * 359.97438 * 7 2 1 10 10 C 1.46498 * 119.99875 * 179.97438 * 9 7 2 11 11 C 1.53121 * 109.52664 * 204.99822 * 10 9 7 12 12 C 1.53036 * 109.27999 * 182.37723 * 11 10 9 13 13 N 1.46849 * 109.52183 * 59.18332 * 12 11 10 14 14 C 1.46901 * 110.99649 * 174.16073 * 13 12 11 15 15 C 1.53000 * 109.46769 * 169.99929 * 14 13 12 16 16 N 1.46499 * 109.46840 * 180.02562 * 15 14 13 17 17 C 1.34779 * 119.99872 * 179.97438 * 16 15 14 18 18 O 1.21273 * 120.00093 * 359.97438 * 17 16 15 19 19 C 1.50703 * 119.99944 * 179.97438 * 17 16 15 20 20 N 1.46899 * 109.47107 * 179.97438 * 19 17 16 21 21 C 1.47013 * 111.00046 * 293.63757 * 20 19 17 22 22 C 1.53095 * 109.25857 * 177.60946 * 21 20 19 23 23 O 1.43014 * 109.25997 * 56.84580 * 22 21 20 24 24 C 1.43022 * 113.73838 * 301.33079 * 23 22 21 25 25 C 1.47013 * 110.99850 * 170.00147 * 20 19 17 26 26 C 1.46848 * 111.19595 * 298.25529 * 13 12 11 27 27 C 1.53036 * 109.52325 * 61.74468 * 26 13 12 28 28 H 0.97003 * 119.99960 * 0.02562 * 1 2 3 29 29 H 0.97003 * 120.00081 * 359.97438 * 9 7 2 30 30 H 1.09001 * 109.52616 * 325.12636 * 10 9 7 31 31 H 1.09001 * 109.50276 * 62.43329 * 11 10 9 32 32 H 1.09006 * 109.50060 * 302.32055 * 11 10 9 33 33 H 1.09001 * 109.46105 * 299.16399 * 12 11 10 34 34 H 1.09006 * 109.45028 * 179.19053 * 12 11 10 35 35 H 1.09002 * 109.47401 * 49.99636 * 14 13 12 36 36 H 1.09001 * 109.46874 * 289.99649 * 14 13 12 37 37 H 1.09001 * 109.47194 * 299.99524 * 15 14 13 38 38 H 1.08992 * 109.47399 * 59.99697 * 15 14 13 39 39 H 0.97005 * 120.00448 * 359.97438 * 16 15 14 40 40 H 1.08998 * 109.47224 * 300.00395 * 19 17 16 41 41 H 1.09002 * 109.47152 * 59.99840 * 19 17 16 42 42 H 1.09005 * 109.50804 * 297.54155 * 21 20 19 43 43 H 1.08998 * 109.50945 * 57.67055 * 21 20 19 44 44 H 1.09006 * 109.50697 * 296.91031 * 22 21 20 45 45 H 1.08998 * 109.54787 * 176.80439 * 22 21 20 46 46 H 1.09001 * 109.50394 * 298.73622 * 24 23 22 47 47 H 1.09002 * 109.54163 * 178.62839 * 24 23 22 48 48 H 1.08999 * 109.50593 * 302.32721 * 25 20 19 49 49 H 1.08994 * 109.51096 * 62.41831 * 25 20 19 50 50 H 1.08997 * 109.46035 * 181.75979 * 26 13 12 51 51 H 1.09006 * 109.46342 * 301.72876 * 26 13 12 52 52 H 1.09005 * 109.50033 * 180.87700 * 27 26 13 53 53 H 1.09001 * 109.50223 * 60.76533 * 27 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4475 2.6527 0.7000 6 1 3.5477 1.4403 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3256 -2.3880 -0.0005 10 6 2.0581 -3.6567 -0.0017 11 6 1.1808 -4.7536 -0.6113 12 6 1.9284 -6.0878 -0.5556 13 7 2.2497 -6.4124 0.8401 14 6 2.8446 -7.7513 0.9456 15 6 3.3914 -7.9564 2.3597 16 7 3.9853 -9.2915 2.4648 17 6 4.5341 -9.6953 3.6277 18 8 4.5367 -8.9533 4.5869 19 6 5.1445 -11.0689 3.7359 20 7 5.6707 -11.2653 5.0933 21 6 6.8031 -10.3650 5.3548 22 6 7.2810 -10.5602 6.7961 23 8 7.6239 -11.9339 6.9974 24 6 6.5438 -12.8388 6.7521 25 6 6.0585 -12.6667 5.3103 26 6 3.1301 -5.3971 1.4321 27 6 2.4184 -4.0423 1.4357 28 1 -0.4850 0.8401 -0.0004 29 1 0.3556 -2.3880 0.0002 30 1 2.9697 -3.5505 -0.5897 31 1 0.9562 -4.5054 -1.6487 32 1 0.2521 -4.8329 -0.0462 33 1 2.8502 -6.0120 -1.1324 34 1 1.3005 -6.8735 -0.9759 35 1 3.6567 -7.8460 0.2247 36 1 2.0844 -8.5042 0.7373 37 1 4.1517 -7.2036 2.5681 38 1 2.5794 -7.8618 3.0805 39 1 3.9836 -9.8849 1.6974 40 1 4.3842 -11.8218 3.5280 41 1 5.9563 -11.1636 3.0147 42 1 7.6171 -10.5947 4.6672 43 1 6.4867 -9.3316 5.2130 44 1 6.4844 -10.2791 7.4850 45 1 8.1561 -9.9363 6.9778 46 1 5.7257 -12.6240 7.4397 47 1 6.8853 -13.8632 6.9014 48 1 5.1986 -13.3134 5.1361 49 1 6.8600 -12.9335 4.6216 50 1 3.3753 -5.6813 2.4555 51 1 4.0463 -5.3245 0.8461 52 1 3.0781 -3.2859 1.8610 53 1 1.5092 -4.1104 2.0331 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001501254683.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:13:50 Heat of formation + Delta-G solvation = -77.984537 kcal Electronic energy + Delta-G solvation = -29589.661728 eV Core-core repulsion = 25495.610557 eV Total energy + Delta-G solvation = -4094.051171 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.226 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.20529 -40.31108 -39.80030 -37.19818 -36.47550 -35.67135 -34.01592 -32.12982 -31.97618 -31.57126 -30.48441 -28.71159 -26.39034 -25.59093 -25.00463 -24.62991 -23.42418 -22.16754 -21.64880 -21.31390 -20.73582 -19.10199 -18.19635 -17.77033 -17.33223 -17.14373 -16.82150 -16.71895 -16.25540 -16.07178 -16.03113 -15.77019 -15.55830 -15.43523 -15.28223 -15.11849 -14.78331 -14.50787 -14.37748 -14.04257 -13.98661 -13.29005 -13.13554 -13.04043 -12.99644 -12.87131 -12.67861 -12.54209 -12.36381 -12.27712 -12.20234 -12.17151 -12.04631 -11.76544 -11.57927 -11.51620 -11.17808 -11.02419 -10.85269 -10.58101 -10.09054 -9.40751 -9.25642 -8.99661 -7.94476 -5.22756 1.45570 1.47284 1.55612 1.63960 1.94706 2.55348 2.75385 2.94536 3.07845 3.38222 3.73054 3.79267 3.82413 3.94309 3.96690 4.02257 4.07705 4.13043 4.19324 4.20662 4.26517 4.33420 4.36312 4.38057 4.47128 4.50182 4.55216 4.62655 4.69987 4.74168 4.74466 4.80266 4.86503 4.88538 4.93695 4.97289 4.98441 4.99448 5.11762 5.20198 5.42085 5.43588 5.49069 5.60324 5.77791 5.90512 6.09961 6.15591 6.16872 6.28229 6.58670 7.29420 7.33508 8.10861 8.34062 9.29062 Molecular weight = 340.23amu Principal moments of inertia in cm(-1) A = 0.020550 B = 0.001646 C = 0.001549 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1362.190364 B =17006.259588 C =18067.622864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.970 5.970 2 C -0.077 4.077 3 Si 0.971 3.029 4 H -0.286 1.286 5 H -0.296 1.296 6 H -0.271 1.271 7 C -0.239 4.239 8 H 0.073 0.927 9 N -0.738 5.738 10 C 0.171 3.829 11 C -0.114 4.114 12 C 0.072 3.928 13 N -0.545 5.545 14 C 0.055 3.945 15 C 0.123 3.877 16 N -0.715 5.715 17 C 0.507 3.493 18 O -0.569 6.569 19 C 0.042 3.958 20 N -0.542 5.542 21 C 0.018 3.982 22 C 0.066 3.934 23 O -0.405 6.405 24 C 0.056 3.944 25 C 0.021 3.979 26 C 0.063 3.937 27 C -0.124 4.124 28 H 0.250 0.750 29 H 0.372 0.628 30 H 0.036 0.964 31 H 0.065 0.935 32 H 0.057 0.943 33 H 0.041 0.959 34 H 0.099 0.901 35 H 0.055 0.945 36 H 0.101 0.899 37 H 0.056 0.944 38 H 0.057 0.943 39 H 0.418 0.582 40 H 0.135 0.865 41 H 0.088 0.912 42 H 0.043 0.957 43 H 0.083 0.917 44 H 0.050 0.950 45 H 0.108 0.892 46 H 0.054 0.946 47 H 0.121 0.879 48 H 0.110 0.890 49 H 0.051 0.949 50 H 0.080 0.920 51 H 0.036 0.964 52 H 0.043 0.957 53 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.180 -33.302 5.017 36.165 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.620 5.620 2 C -0.269 4.269 3 Si 0.800 3.200 4 H -0.213 1.213 5 H -0.223 1.223 6 H -0.196 1.196 7 C -0.371 4.371 8 H 0.091 0.909 9 N -0.377 5.377 10 C 0.063 3.937 11 C -0.152 4.152 12 C -0.056 4.056 13 N -0.270 5.270 14 C -0.073 4.073 15 C -0.002 4.002 16 N -0.370 5.370 17 C 0.294 3.706 18 O -0.448 6.448 19 C -0.089 4.089 20 N -0.268 5.268 21 C -0.110 4.110 22 C -0.011 4.011 23 O -0.324 6.324 24 C -0.020 4.020 25 C -0.106 4.106 26 C -0.065 4.065 27 C -0.164 4.164 28 H 0.059 0.941 29 H 0.203 0.797 30 H 0.054 0.946 31 H 0.083 0.917 32 H 0.076 0.924 33 H 0.059 0.941 34 H 0.117 0.883 35 H 0.073 0.927 36 H 0.119 0.881 37 H 0.074 0.926 38 H 0.075 0.925 39 H 0.255 0.745 40 H 0.153 0.847 41 H 0.105 0.895 42 H 0.061 0.939 43 H 0.101 0.899 44 H 0.068 0.932 45 H 0.126 0.874 46 H 0.072 0.928 47 H 0.139 0.861 48 H 0.128 0.872 49 H 0.069 0.931 50 H 0.098 0.902 51 H 0.054 0.946 52 H 0.062 0.938 53 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 12.706 -32.597 6.339 35.555 hybrid contribution 0.791 1.365 -1.228 1.999 sum 13.497 -31.231 5.111 34.405 Atomic orbital electron populations 1.69820 1.06569 1.25944 1.59714 1.25542 0.96375 1.01003 1.03976 0.85173 0.77655 0.79690 0.77454 1.21279 1.22254 1.19645 1.19609 0.91299 0.85403 1.40793 0.90941 1.42643 1.05407 1.01019 1.88632 1.20492 0.94126 0.85243 0.93866 1.21749 0.98910 0.94067 1.00496 1.21996 0.99255 0.96718 0.87584 1.61915 1.44653 1.01808 1.18674 1.22227 0.99168 0.91144 0.94779 1.21296 0.97330 0.83985 0.97579 1.45756 1.59780 1.17248 1.14208 1.21084 0.77808 0.89579 0.82102 1.90696 1.58438 1.57041 1.38593 1.22043 1.01625 0.94371 0.90814 1.61817 1.33222 1.05815 1.25939 1.22826 0.91611 0.98829 0.97708 1.22652 1.00927 0.82827 0.94703 1.87954 1.37735 1.16784 1.89891 1.22870 0.89707 0.94605 0.94833 1.22879 1.01492 0.88432 0.97814 1.22090 0.93528 0.91131 0.99791 1.22109 0.99648 0.95389 0.99280 0.94089 0.79662 0.94634 0.91670 0.92376 0.94108 0.88284 0.92652 0.88067 0.92613 0.92504 0.74483 0.84702 0.89473 0.93916 0.89887 0.93171 0.87426 0.92763 0.86129 0.87214 0.93095 0.90227 0.94607 0.93843 0.93480 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.46 13.06 21.65 0.28 -60.18 16 2 C -0.08 -4.50 5.50 84.86 0.47 -4.03 16 3 Si 0.97 47.02 29.55 68.60 2.03 49.04 16 4 H -0.29 -13.50 7.11 99.48 0.71 -12.80 16 5 H -0.30 -14.43 7.11 99.48 0.71 -13.72 16 6 H -0.27 -12.49 7.11 99.48 0.71 -11.79 16 7 C -0.24 -13.58 9.93 84.03 0.83 -12.74 16 8 H 0.07 3.97 7.83 -2.91 -0.02 3.95 16 9 N -0.74 -38.20 5.13 -322.56 -1.65 -39.85 16 10 C 0.17 6.87 2.84 45.07 0.13 6.99 16 11 C -0.11 -3.66 5.57 30.65 0.17 -3.49 16 12 C 0.07 1.69 5.42 86.33 0.47 2.16 16 13 N -0.54 -12.83 4.81 -896.34 -4.31 -17.14 16 14 C 0.05 0.85 5.39 86.30 0.46 1.31 16 15 C 0.12 2.23 4.92 86.38 0.43 2.66 16 16 N -0.72 -9.13 5.56 -463.07 -2.57 -11.70 16 17 C 0.51 8.86 7.54 87.66 0.66 9.53 16 18 O -0.57 -15.91 14.35 -3.01 -0.04 -15.95 16 19 C 0.04 0.42 5.45 85.56 0.47 0.89 16 20 N -0.54 -8.05 4.46 -899.79 -4.01 -12.06 16 21 C 0.02 0.32 5.29 86.31 0.46 0.77 16 22 C 0.07 1.12 7.01 72.01 0.50 1.62 16 23 O -0.40 -7.10 10.83 -148.98 -1.61 -8.71 16 24 C 0.06 0.66 7.01 72.01 0.50 1.16 16 25 C 0.02 0.20 5.64 86.31 0.49 0.69 16 26 C 0.06 1.75 4.85 86.33 0.42 2.17 16 27 C -0.12 -4.58 5.68 30.65 0.17 -4.41 16 28 H 0.25 15.13 8.31 -92.71 -0.77 14.36 16 29 H 0.37 20.73 7.80 -92.71 -0.72 20.00 16 30 H 0.04 1.46 8.08 -2.39 -0.02 1.44 16 31 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 32 H 0.06 2.00 8.14 -2.38 -0.02 1.98 16 33 H 0.04 0.90 8.14 -2.39 -0.02 0.88 16 34 H 0.10 1.80 8.12 -2.38 -0.02 1.78 16 35 H 0.06 0.71 8.08 -2.39 -0.02 0.69 16 36 H 0.10 1.20 8.14 -2.39 -0.02 1.18 16 37 H 0.06 1.23 6.21 -2.39 -0.01 1.21 16 38 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 39 H 0.42 2.07 8.47 -92.70 -0.79 1.29 16 40 H 0.14 0.59 8.04 -2.39 -0.02 0.57 16 41 H 0.09 0.53 8.12 -2.39 -0.02 0.51 16 42 H 0.04 0.66 8.14 -2.38 -0.02 0.64 16 43 H 0.08 1.83 5.88 -2.39 -0.01 1.82 16 44 H 0.05 0.95 8.14 -2.38 -0.02 0.93 16 45 H 0.11 1.52 8.14 -2.39 -0.02 1.50 16 46 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 47 H 0.12 0.81 8.14 -2.39 -0.02 0.79 16 48 H 0.11 0.56 8.09 -2.39 -0.02 0.54 16 49 H 0.05 0.43 8.14 -2.39 -0.02 0.41 16 50 H 0.08 2.13 5.81 -2.39 -0.01 2.12 16 51 H 0.04 0.95 8.14 -2.38 -0.02 0.93 16 52 H 0.04 1.75 8.14 -2.38 -0.02 1.73 16 53 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 Total: -1.00 -76.52 409.93 -5.87 -82.40 By element: Atomic # 1 Polarization: 29.51 SS G_CDS: -0.61 Total: 28.89 kcal Atomic # 6 Polarization: -1.36 SS G_CDS: 6.63 Total: 5.27 kcal Atomic # 7 Polarization: -128.67 SS G_CDS: -12.26 Total: -140.94 kcal Atomic # 8 Polarization: -23.01 SS G_CDS: -1.66 Total: -24.66 kcal Atomic # 14 Polarization: 47.02 SS G_CDS: 2.03 Total: 49.04 kcal Total: -76.52 -5.87 -82.40 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001501254683.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.412 kcal (2) G-P(sol) polarization free energy of solvation -76.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.874 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.397 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.985 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds