Wall clock time and date at job start Sat Apr 11 2020 06:14:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36928 * 120.00589 * 2 1 4 4 H 1.07998 * 120.00030 * 38.19625 * 3 2 1 5 5 C 1.38817 * 120.00152 * 218.20452 * 3 2 1 6 6 N 1.31622 * 119.99810 * 196.90403 * 5 3 2 7 7 Si 1.86791 * 119.99829 * 16.89902 * 5 3 2 8 8 H 1.48501 * 109.47405 * 270.97170 * 7 5 3 9 9 H 1.48495 * 109.47493 * 30.97565 * 7 5 3 10 10 H 1.48506 * 109.46969 * 150.97517 * 7 5 3 11 11 C 1.46509 * 119.99428 * 179.97438 * 2 1 3 12 12 C 1.53001 * 109.47005 * 277.97581 * 11 2 1 13 13 H 1.09007 * 109.87110 * 65.67044 * 12 11 2 14 14 C 1.54321 * 109.88179 * 186.68356 * 12 11 2 15 15 C 1.55150 * 102.94282 * 141.61222 * 14 12 11 16 16 C 1.54911 * 101.58370 * 324.50434 * 15 14 12 17 17 N 1.47013 * 109.88674 * 304.65634 * 12 11 2 18 18 C 1.34782 * 125.64972 * 61.60396 * 17 12 11 19 19 O 1.21281 * 119.99616 * 7.50508 * 18 17 12 20 20 C 1.50705 * 119.99970 * 187.50292 * 18 17 12 21 21 H 1.08992 * 109.47047 * 22.34975 * 20 18 17 22 22 N 1.46497 * 109.46806 * 142.34767 * 20 18 17 23 23 C 1.34781 * 120.00153 * 204.99845 * 22 20 18 24 24 N 1.34769 * 120.00276 * 180.02562 * 23 22 20 25 25 O 1.21583 * 119.99517 * 0.02562 * 23 22 20 26 26 C 1.52996 * 109.46873 * 262.34656 * 20 18 17 27 27 C 1.53001 * 109.47154 * 54.53457 * 26 20 18 28 28 C 1.53004 * 109.46918 * 174.53150 * 26 20 18 29 29 C 1.52992 * 109.47635 * 294.52952 * 26 20 18 30 30 H 1.08996 * 109.47165 * 95.94480 * 1 2 3 31 31 H 1.08997 * 109.47137 * 215.95077 * 1 2 3 32 32 H 1.09002 * 109.46900 * 335.94724 * 1 2 3 33 33 H 0.96995 * 119.99571 * 180.02562 * 6 5 3 34 34 H 1.08989 * 109.47238 * 37.98134 * 11 2 1 35 35 H 1.09003 * 109.46850 * 157.98262 * 11 2 1 36 36 H 1.09002 * 110.72359 * 259.97736 * 14 12 11 37 37 H 1.09001 * 110.72044 * 23.25253 * 14 12 11 38 38 H 1.09007 * 111.00290 * 82.57199 * 15 14 12 39 39 H 1.08995 * 111.00800 * 206.38954 * 15 14 12 40 40 H 1.08992 * 110.37081 * 155.84692 * 16 15 14 41 41 H 1.09000 * 110.36293 * 278.05791 * 16 15 14 42 42 H 0.97000 * 120.00165 * 25.00217 * 22 20 18 43 43 H 0.97006 * 120.00242 * 359.97438 * 24 23 22 44 44 H 0.96994 * 120.00335 * 180.02562 * 24 23 22 45 45 H 1.09004 * 109.47034 * 65.75242 * 27 26 20 46 46 H 1.09003 * 109.46964 * 185.75304 * 27 26 20 47 47 H 1.08997 * 109.46783 * 305.75235 * 27 26 20 48 48 H 1.09008 * 109.46849 * 59.99973 * 28 26 20 49 49 H 1.08998 * 109.47375 * 179.97438 * 28 26 20 50 50 H 1.09004 * 109.47003 * 300.00461 * 28 26 20 51 51 H 1.09009 * 109.46932 * 60.00239 * 29 26 20 52 52 H 1.09000 * 109.47725 * 179.97438 * 29 26 20 53 53 H 1.09003 * 109.47581 * 300.00834 * 29 26 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1498 1.1858 0.0000 4 1 1.7833 2.0210 0.5783 5 6 3.3149 1.3144 -0.7435 6 7 4.1461 2.3051 -0.4982 7 14 3.7033 0.0815 -2.0919 8 1 4.4657 -1.0563 -1.5178 9 1 2.4372 -0.4197 -2.6841 10 1 4.5161 0.7403 -3.1459 11 6 2.1974 -1.2689 0.0006 12 6 2.2790 -1.8100 1.4294 13 1 1.2816 -2.0684 1.7852 14 6 3.1890 -3.0558 1.4676 15 6 3.9523 -2.8875 2.8078 16 6 4.1305 -1.3501 2.8734 17 7 2.8790 -0.7999 2.3131 18 6 2.3718 0.4228 2.5668 19 8 1.2693 0.7188 2.1573 20 6 3.1747 1.4221 3.3593 21 1 4.2324 1.1657 3.3017 22 7 2.9664 2.7632 2.8078 23 6 3.9040 3.7159 2.9804 24 7 3.7122 4.9498 2.4735 25 8 4.9228 3.4621 3.5935 26 6 2.7222 1.3957 4.8206 27 6 2.8115 -0.0347 5.3564 28 6 3.6266 2.3086 5.6510 29 6 1.2764 1.8867 4.9159 30 1 -0.3633 -0.1064 -1.0221 31 1 -0.3633 -0.8319 0.6033 32 1 -0.3633 0.9385 0.4189 33 1 4.9600 2.3952 -1.0180 34 1 1.6776 -1.9887 -0.6315 35 1 3.2042 -1.1074 -0.3848 36 1 2.5931 -3.9685 1.4751 37 1 3.8819 -3.0532 0.6262 38 1 3.3550 -3.2477 3.6455 39 1 4.9178 -3.3922 2.7736 40 1 4.2565 -1.0265 3.9065 41 1 4.9862 -1.0415 2.2730 42 1 2.1538 2.9655 2.3183 43 1 2.8996 5.1522 1.9840 44 1 4.3871 5.6354 2.5974 45 1 3.8552 -0.3479 5.3841 46 1 2.3939 -0.0725 6.3626 47 1 2.2489 -0.7027 4.7042 48 1 3.5630 3.3277 5.2693 49 1 3.3040 2.2902 6.6920 50 1 4.6567 1.9588 5.5832 51 1 0.6320 1.2362 4.3243 52 1 0.9539 1.8674 5.9569 53 1 1.2127 2.9057 4.5342 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001505455719.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:14:06 Heat of formation + Delta-G solvation = -28.531470 kcal Electronic energy + Delta-G solvation = -35167.573170 eV Core-core repulsion = 31075.666445 eV Total energy + Delta-G solvation = -4091.906725 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.226 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.81267 -40.40471 -38.60756 -37.49991 -36.71468 -34.70920 -33.65443 -33.46222 -32.40278 -31.10331 -28.32740 -28.08520 -27.90979 -27.65337 -26.52549 -23.93587 -22.61574 -22.08954 -21.88459 -20.43602 -19.53611 -19.05151 -18.76015 -18.03941 -17.61311 -17.16521 -16.92677 -16.63204 -15.91046 -15.80726 -15.39074 -15.19105 -15.10223 -14.88748 -14.74082 -14.40808 -14.17866 -14.04972 -13.96683 -13.72163 -13.41844 -13.26014 -13.17466 -13.04854 -12.94781 -12.71355 -12.59028 -12.51806 -12.24697 -12.09961 -11.99240 -11.84497 -11.76688 -11.71281 -11.52941 -11.38122 -11.19821 -11.11044 -10.49700 -10.38037 -10.23187 -9.56626 -9.24369 -8.27681 -7.92127 -5.25311 1.25654 1.40645 1.47140 1.80377 2.41703 2.49554 2.55904 2.60347 3.27367 3.56385 3.70041 3.77232 3.83369 3.90420 4.01916 4.07964 4.11108 4.22345 4.34724 4.47038 4.52786 4.62064 4.65434 4.71015 4.80154 4.81129 4.86248 4.87785 4.92302 4.97703 4.99290 5.07944 5.09848 5.13616 5.17906 5.19985 5.23682 5.32106 5.33662 5.43779 5.49051 5.58435 5.71841 5.78899 6.08180 6.15404 6.25866 6.49818 7.01385 7.20723 7.27777 7.76487 7.89871 7.92428 8.34712 9.22259 Molecular weight = 340.23amu Principal moments of inertia in cm(-1) A = 0.010533 B = 0.007100 C = 0.005462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2657.638700 B = 3942.646097 C = 5125.471080 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.159 3.841 2 N -0.607 5.607 3 C -0.199 4.199 4 H 0.066 0.934 5 C -0.019 4.019 6 N -0.924 5.924 7 Si 0.918 3.082 8 H -0.285 1.285 9 H -0.279 1.279 10 H -0.328 1.328 11 C 0.113 3.887 12 C 0.123 3.877 13 H 0.066 0.934 14 C -0.125 4.125 15 C -0.113 4.113 16 C 0.081 3.919 17 N -0.609 5.609 18 C 0.554 3.446 19 O -0.514 6.514 20 C 0.178 3.822 21 H 0.061 0.939 22 N -0.699 5.699 23 C 0.716 3.284 24 N -0.851 5.851 25 O -0.640 6.640 26 C -0.071 4.071 27 C -0.141 4.141 28 C -0.116 4.116 29 C -0.128 4.128 30 H -0.007 1.007 31 H 0.035 0.965 32 H 0.036 0.964 33 H 0.244 0.756 34 H 0.050 0.950 35 H 0.038 0.962 36 H 0.106 0.894 37 H 0.060 0.940 38 H 0.095 0.905 39 H 0.099 0.901 40 H 0.092 0.908 41 H 0.035 0.965 42 H 0.399 0.601 43 H 0.404 0.596 44 H 0.416 0.584 45 H 0.065 0.935 46 H 0.079 0.921 47 H 0.053 0.947 48 H 0.040 0.960 49 H 0.066 0.934 50 H 0.043 0.957 51 H 0.049 0.951 52 H 0.069 0.931 53 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.519 -7.253 11.815 14.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 N -0.330 5.330 3 C -0.330 4.330 4 H 0.084 0.916 5 C -0.215 4.215 6 N -0.570 5.570 7 Si 0.753 3.247 8 H -0.213 1.213 9 H -0.204 1.204 10 H -0.258 1.258 11 C -0.014 4.014 12 C 0.017 3.983 13 H 0.084 0.916 14 C -0.163 4.163 15 C -0.151 4.151 16 C -0.042 4.042 17 N -0.344 5.344 18 C 0.341 3.659 19 O -0.388 6.388 20 C 0.068 3.932 21 H 0.079 0.921 22 N -0.353 5.353 23 C 0.415 3.585 24 N -0.418 5.418 25 O -0.523 6.523 26 C -0.073 4.073 27 C -0.198 4.198 28 C -0.173 4.173 29 C -0.185 4.185 30 H 0.011 0.989 31 H 0.054 0.946 32 H 0.055 0.945 33 H 0.053 0.947 34 H 0.068 0.932 35 H 0.056 0.944 36 H 0.124 0.876 37 H 0.079 0.921 38 H 0.113 0.887 39 H 0.118 0.882 40 H 0.110 0.890 41 H 0.053 0.947 42 H 0.235 0.765 43 H 0.233 0.767 44 H 0.248 0.752 45 H 0.084 0.916 46 H 0.098 0.902 47 H 0.072 0.928 48 H 0.059 0.941 49 H 0.085 0.915 50 H 0.062 0.938 51 H 0.068 0.932 52 H 0.088 0.912 53 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -3.314 -7.283 12.060 14.473 hybrid contribution 0.414 0.432 -2.091 2.175 sum -2.900 -6.850 9.969 12.439 Atomic orbital electron populations 1.20696 0.82982 0.99423 0.95478 1.43947 1.01709 1.01206 1.86122 1.18723 1.04405 0.90836 1.19038 0.91632 1.25870 0.98832 0.97354 0.99402 1.69893 1.11233 1.34102 1.41809 0.86365 0.76704 0.79698 0.81950 1.21327 1.20430 1.25844 1.21788 0.95749 0.88315 0.95505 1.22155 0.97028 0.88045 0.91094 0.91585 1.22688 0.98424 0.96747 0.98452 1.22704 1.02075 0.92774 0.97520 1.22705 0.86453 0.95713 0.99344 1.48216 1.24504 1.14655 1.47043 1.19487 0.86451 0.80895 0.79052 1.90615 1.21469 1.76595 1.50072 1.20448 0.98434 0.81807 0.92560 0.92110 1.44425 1.22119 1.09573 1.59194 1.15818 0.82504 0.81435 0.78758 1.42629 1.26364 1.11358 1.61414 1.90836 1.29700 1.81917 1.49814 1.20900 0.96756 0.97543 0.92054 1.22036 1.02180 0.93793 1.01818 1.21728 0.98148 0.98762 0.98708 1.21729 0.94360 1.00736 1.01684 0.98900 0.94585 0.94516 0.94664 0.93179 0.94361 0.87596 0.92106 0.88679 0.88206 0.88991 0.94669 0.76468 0.76735 0.75212 0.91578 0.90224 0.92790 0.94053 0.91535 0.93804 0.93170 0.91221 0.93680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 6.53 9.27 127.77 1.18 7.72 16 2 N -0.61 -27.79 1.27 -726.94 -0.92 -28.72 16 3 C -0.20 -10.39 6.60 84.04 0.55 -9.83 16 4 H 0.07 3.69 5.49 -2.91 -0.02 3.68 16 5 C -0.02 -1.06 5.35 84.86 0.45 -0.61 16 6 N -0.92 -53.96 13.97 21.65 0.30 -53.66 16 7 Si 0.92 46.93 24.93 68.60 1.71 48.64 16 8 H -0.28 -13.99 6.45 99.48 0.64 -13.35 16 9 H -0.28 -14.12 7.11 99.48 0.71 -13.41 16 10 H -0.33 -17.61 7.11 99.48 0.71 -16.90 16 11 C 0.11 4.63 3.80 86.38 0.33 4.96 16 12 C 0.12 4.08 3.29 45.34 0.15 4.23 16 13 H 0.07 2.16 8.04 -2.38 -0.02 2.14 16 14 C -0.12 -3.04 6.48 31.78 0.21 -2.83 16 15 C -0.11 -2.31 7.08 31.98 0.23 -2.09 16 16 C 0.08 2.35 5.68 86.79 0.49 2.84 16 17 N -0.61 -21.49 2.62 -787.25 -2.06 -23.56 16 18 C 0.55 21.56 3.03 87.66 0.27 21.83 16 19 O -0.51 -21.89 8.74 -3.03 -0.03 -21.91 16 20 C 0.18 6.68 1.56 44.25 0.07 6.75 16 21 H 0.06 2.64 6.55 -2.39 -0.02 2.62 16 22 N -0.70 -27.59 3.94 -461.43 -1.82 -29.41 16 23 C 0.72 28.84 7.43 179.06 1.33 30.17 16 24 N -0.85 -27.48 8.88 -184.76 -1.64 -29.12 16 25 O -0.64 -29.11 14.32 -3.98 -0.06 -29.16 16 26 C -0.07 -2.11 0.62 -52.18 -0.03 -2.14 16 27 C -0.14 -3.42 6.95 71.98 0.50 -2.92 16 28 C -0.12 -3.50 7.08 71.98 0.51 -2.99 16 29 C -0.13 -3.65 7.96 71.98 0.57 -3.08 16 30 H -0.01 -0.29 8.14 -2.39 -0.02 -0.31 16 31 H 0.04 1.32 8.01 -2.39 -0.02 1.30 16 32 H 0.04 1.57 7.50 -2.39 -0.02 1.55 16 33 H 0.24 14.45 8.31 -92.71 -0.77 13.67 16 34 H 0.05 1.90 8.13 -2.39 -0.02 1.88 16 35 H 0.04 1.79 3.10 -2.39 -0.01 1.78 16 36 H 0.11 1.94 8.14 -2.39 -0.02 1.92 16 37 H 0.06 1.64 7.78 -2.39 -0.02 1.62 16 38 H 0.09 1.57 8.14 -2.38 -0.02 1.55 16 39 H 0.10 1.64 8.14 -2.39 -0.02 1.62 16 40 H 0.09 2.39 4.31 -2.39 -0.01 2.38 16 41 H 0.03 1.20 8.14 -2.39 -0.02 1.18 16 42 H 0.40 16.49 6.66 -92.71 -0.62 15.87 16 43 H 0.40 11.68 8.84 -92.70 -0.82 10.86 16 44 H 0.42 11.75 8.93 -92.71 -0.83 10.92 16 45 H 0.07 1.50 6.33 -2.39 -0.02 1.49 16 46 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 47 H 0.05 1.41 6.13 -2.39 -0.01 1.39 16 48 H 0.04 1.41 5.63 -2.38 -0.01 1.40 16 49 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 50 H 0.04 1.43 7.87 -2.39 -0.02 1.41 16 51 H 0.05 1.60 6.50 -2.38 -0.02 1.58 16 52 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 53 H 0.04 1.36 7.46 -2.39 -0.02 1.34 16 Total: -1.00 -69.82 378.23 0.92 -68.91 By element: Atomic # 1 Polarization: 47.35 SS G_CDS: -1.37 Total: 45.98 kcal Atomic # 6 Polarization: 45.20 SS G_CDS: 6.81 Total: 52.01 kcal Atomic # 7 Polarization: -158.31 SS G_CDS: -6.14 Total: -164.46 kcal Atomic # 8 Polarization: -50.99 SS G_CDS: -0.08 Total: -51.08 kcal Atomic # 14 Polarization: 46.93 SS G_CDS: 1.71 Total: 48.64 kcal Total: -69.82 0.92 -68.91 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001505455719.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.375 kcal (2) G-P(sol) polarization free energy of solvation -69.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.919 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.906 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.531 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds