Wall clock time and date at job start Sat Apr 11 2020 06:14:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.47230 * 2 1 4 4 N 1.46493 * 109.47550 * 120.00644 * 2 1 3 5 5 C 1.34780 * 120.00341 * 154.99727 * 4 2 1 6 6 O 1.21283 * 119.99681 * 0.02562 * 5 4 2 7 7 C 1.50699 * 120.00007 * 180.02562 * 5 4 2 8 8 N 1.46902 * 109.46765 * 180.02562 * 7 5 4 9 9 C 1.46905 * 110.99989 * 293.94958 * 8 7 5 10 10 C 1.46907 * 110.99953 * 170.00102 * 8 7 5 11 11 C 1.50696 * 109.47067 * 189.99808 * 10 8 7 12 12 O 1.21286 * 120.00282 * 0.02562 * 11 10 8 13 13 N 1.34774 * 119.99763 * 179.97438 * 11 10 8 14 14 C 1.46506 * 119.99952 * 179.97438 * 13 11 10 15 15 C 1.53773 * 113.61686 * 254.13880 * 14 13 11 16 16 C 1.54049 * 86.98868 * 270.83833 * 15 14 13 17 17 C 1.53002 * 113.62545 * 220.02302 * 16 15 14 18 18 N 1.46502 * 109.46813 * 272.49316 * 17 16 15 19 19 C 1.36936 * 119.99868 * 179.97438 * 18 17 16 20 20 H 1.08009 * 119.99818 * 0.02562 * 19 18 17 21 21 C 1.38810 * 120.00011 * 179.97438 * 19 18 17 22 22 N 1.31612 * 120.00163 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 119.99930 * 180.02562 * 21 19 18 24 24 H 1.48499 * 109.47044 * 0.02562 * 23 21 19 25 25 H 1.48500 * 109.47269 * 119.99857 * 23 21 19 26 26 H 1.48503 * 109.47213 * 240.00291 * 23 21 19 27 27 C 1.53781 * 113.61361 * 156.53041 * 14 13 11 28 28 H 1.09003 * 109.46541 * 299.99611 * 1 2 3 29 29 H 1.08998 * 109.47196 * 59.99418 * 1 2 3 30 30 H 1.08996 * 109.47314 * 179.97438 * 1 2 3 31 31 H 1.09011 * 109.46916 * 240.00872 * 2 1 3 32 32 H 1.09006 * 109.47000 * 180.02562 * 3 2 1 33 33 H 1.08998 * 109.47506 * 300.00392 * 3 2 1 34 34 H 1.09006 * 109.46643 * 60.01015 * 3 2 1 35 35 H 0.96998 * 119.99846 * 334.99946 * 4 2 1 36 36 H 1.08999 * 109.46954 * 60.00229 * 7 5 4 37 37 H 1.08996 * 109.47130 * 299.99667 * 7 5 4 38 38 H 1.09000 * 109.47223 * 296.04921 * 9 8 7 39 39 H 1.08999 * 109.46915 * 56.04775 * 9 8 7 40 40 H 1.09000 * 109.47039 * 176.04698 * 9 8 7 41 41 H 1.09001 * 109.47137 * 69.99347 * 10 8 7 42 42 H 1.09002 * 109.46498 * 309.99891 * 10 8 7 43 43 H 0.96997 * 120.00341 * 359.97438 * 13 11 10 44 44 H 1.09002 * 112.84852 * 25.33640 * 14 13 11 45 45 H 1.09007 * 113.61678 * 25.42910 * 15 14 13 46 46 H 1.09000 * 113.61916 * 156.33583 * 15 14 13 47 47 H 1.09005 * 113.68989 * 89.12112 * 16 15 14 48 48 H 1.09005 * 109.46483 * 32.48989 * 17 16 15 49 49 H 1.08995 * 109.47301 * 152.49438 * 17 16 15 50 50 H 0.97002 * 119.99977 * 0.02562 * 18 17 16 51 51 H 0.97000 * 120.00406 * 180.02562 * 22 21 19 52 52 H 1.09001 * 113.61158 * 203.66864 * 27 14 13 53 53 H 1.08998 * 113.61196 * 334.56885 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6907 1.1960 5 6 3.2404 -1.2593 1.1941 6 8 3.9358 -1.1987 0.2023 7 6 3.7425 -1.9703 2.4243 8 7 5.0895 -2.4982 2.1692 9 6 5.0570 -3.5514 1.1456 10 6 5.7065 -2.9880 3.4091 11 6 7.1615 -3.2912 3.1604 12 8 7.6378 -3.1161 2.0588 13 7 7.9338 -3.7561 4.1623 14 6 9.3483 -4.0514 3.9204 15 6 9.6595 -5.5554 3.8456 16 6 9.8761 -5.5037 5.3699 17 6 11.0601 -6.3456 5.8499 18 7 10.6130 -7.7178 6.1021 19 6 11.5054 -8.6587 6.5419 20 1 12.5388 -8.3890 6.7033 21 6 11.0818 -9.9587 6.7814 22 7 9.8225 -10.2871 6.5853 23 14 12.2990 -11.2420 7.3821 24 1 13.6416 -10.6231 7.5228 25 1 11.8559 -11.7666 8.6988 26 1 12.3673 -12.3562 6.4027 27 6 10.2118 -4.0135 5.1923 28 1 -0.3632 0.5138 0.8901 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3634 -1.0276 -0.0005 31 1 1.8933 -0.5138 -0.8902 32 1 3.1301 1.4425 -0.0005 33 1 1.6767 1.9564 -0.8899 34 1 1.6768 1.9562 0.8901 35 1 1.4623 -0.7388 1.9893 36 1 3.0699 -2.7925 2.6687 37 1 3.7791 -1.2703 3.2590 38 1 4.4774 -4.3980 1.5137 39 1 4.5953 -3.1621 0.2382 40 1 6.0741 -3.8756 0.9255 41 1 5.1969 -3.8948 3.7350 42 1 5.6214 -2.2253 4.1831 43 1 7.5533 -3.8951 5.0436 44 1 9.7649 -3.4776 3.0925 45 1 8.8063 -6.1635 3.5448 46 1 10.5644 -5.7867 3.2836 47 1 8.9688 -5.6810 5.9474 48 1 11.8360 -6.3512 5.0843 49 1 11.4601 -5.9190 6.7696 50 1 9.6850 -7.9600 5.9568 51 1 9.5263 -11.1954 6.7530 52 1 11.2674 -3.8239 4.9978 53 1 9.8041 -3.3774 5.9780 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001505506255.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:14:10 Heat of formation + Delta-G solvation = -59.955282 kcal Electronic energy + Delta-G solvation = -29096.004073 eV Core-core repulsion = 25002.734709 eV Total energy + Delta-G solvation = -4093.269364 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.226 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.37507 -40.85728 -39.59871 -37.63782 -36.58871 -36.28146 -34.39495 -32.82246 -32.69635 -29.88147 -28.86742 -28.22215 -28.08717 -26.61025 -25.39450 -24.47694 -22.89567 -22.19175 -21.52625 -21.35787 -20.26456 -19.05595 -18.51916 -17.89220 -17.09832 -16.95896 -16.83026 -16.71042 -16.42219 -15.88972 -15.82412 -15.42149 -15.33321 -15.23931 -15.05603 -14.93532 -14.45396 -14.41685 -13.89907 -13.77666 -13.62753 -13.40368 -13.15792 -13.12517 -13.07222 -12.96447 -12.84596 -12.76399 -12.62341 -12.48923 -12.23867 -12.12116 -11.92438 -11.89803 -11.71853 -11.33137 -11.13138 -11.00365 -10.85446 -10.59384 -10.06498 -9.96471 -9.28640 -8.97204 -7.95162 -5.23060 1.47121 1.47866 1.57986 1.68286 1.70583 1.90499 2.32077 2.56199 3.06377 3.38198 3.61927 3.62215 3.78007 3.82374 3.96307 3.98064 4.01654 4.14102 4.21555 4.31900 4.33431 4.34686 4.38433 4.42423 4.58345 4.59397 4.62067 4.74295 4.77064 4.78998 4.86403 4.93489 4.93879 4.94322 5.00492 5.03913 5.16533 5.18196 5.27148 5.29897 5.32997 5.41012 5.50581 5.61581 5.72861 5.87446 5.90882 6.28018 6.65468 6.66883 7.34073 7.35655 7.38539 8.12099 8.34659 9.28661 Molecular weight = 340.23amu Principal moments of inertia in cm(-1) A = 0.026024 B = 0.001515 C = 0.001467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1075.665961 B =18478.070286 C =19088.400896 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.133 3.867 3 C -0.159 4.159 4 N -0.716 5.716 5 C 0.507 3.493 6 O -0.570 6.570 7 C 0.038 3.962 8 N -0.534 5.534 9 C 0.025 3.975 10 C 0.042 3.958 11 C 0.508 3.492 12 O -0.569 6.569 13 N -0.701 5.701 14 C 0.128 3.872 15 C -0.144 4.144 16 C -0.108 4.108 17 C 0.159 3.841 18 N -0.745 5.745 19 C -0.245 4.245 20 H 0.074 0.926 21 C -0.076 4.076 22 N -0.970 5.970 23 Si 0.972 3.028 24 H -0.266 1.266 25 H -0.291 1.291 26 H -0.295 1.295 27 C -0.115 4.115 28 H 0.078 0.922 29 H 0.078 0.922 30 H 0.063 0.937 31 H 0.058 0.942 32 H 0.030 0.970 33 H 0.074 0.926 34 H 0.071 0.929 35 H 0.416 0.584 36 H 0.093 0.907 37 H 0.138 0.862 38 H 0.033 0.967 39 H 0.066 0.934 40 H 0.057 0.943 41 H 0.091 0.909 42 H 0.142 0.858 43 H 0.415 0.585 44 H 0.086 0.914 45 H 0.049 0.951 46 H 0.079 0.921 47 H 0.089 0.911 48 H 0.017 0.983 49 H 0.023 0.977 50 H 0.373 0.627 51 H 0.251 0.749 52 H 0.102 0.898 53 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.212 25.395 -5.664 34.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.029 3.971 3 C -0.217 4.217 4 N -0.370 5.370 5 C 0.293 3.707 6 O -0.448 6.448 7 C -0.092 4.092 8 N -0.258 5.258 9 C -0.123 4.123 10 C -0.089 4.089 11 C 0.296 3.704 12 O -0.447 6.447 13 N -0.354 5.354 14 C 0.022 3.978 15 C -0.183 4.183 16 C -0.127 4.127 17 C 0.032 3.968 18 N -0.387 5.387 19 C -0.377 4.377 20 H 0.092 0.908 21 C -0.268 4.268 22 N -0.621 5.621 23 Si 0.801 3.199 24 H -0.191 1.191 25 H -0.218 1.218 26 H -0.222 1.222 27 C -0.153 4.153 28 H 0.097 0.903 29 H 0.097 0.903 30 H 0.082 0.918 31 H 0.076 0.924 32 H 0.050 0.950 33 H 0.093 0.907 34 H 0.090 0.910 35 H 0.254 0.746 36 H 0.111 0.889 37 H 0.156 0.844 38 H 0.051 0.949 39 H 0.084 0.916 40 H 0.076 0.924 41 H 0.109 0.891 42 H 0.160 0.840 43 H 0.252 0.748 44 H 0.104 0.896 45 H 0.068 0.932 46 H 0.098 0.902 47 H 0.108 0.892 48 H 0.035 0.965 49 H 0.041 0.959 50 H 0.205 0.795 51 H 0.059 0.941 52 H 0.120 0.880 53 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -20.918 25.925 -7.293 34.101 hybrid contribution -0.287 -2.062 0.863 2.253 sum -21.205 23.863 -6.430 32.565 Atomic orbital electron populations 1.22012 0.91626 1.03101 1.04135 1.20941 0.95667 0.92581 0.87961 1.22141 1.00247 0.96089 1.03263 1.46004 1.17171 1.56317 1.17523 1.21037 0.81340 0.78500 0.89790 1.90710 1.57052 1.60307 1.36778 1.22120 0.89689 1.01024 0.96353 1.61165 1.20006 1.36326 1.08325 1.22471 1.02031 0.91943 0.95890 1.22089 0.90120 1.03351 0.93313 1.21145 0.89606 0.75710 0.83965 1.90695 1.75506 1.53220 1.25315 1.45578 1.09548 1.66204 1.14038 1.21677 0.81764 0.95173 0.99182 1.23457 1.01272 0.96773 0.96795 1.22719 0.98391 0.95850 0.95714 1.20838 0.95234 0.83950 0.96734 1.42578 1.09427 1.06440 1.80247 1.19709 0.92332 0.90683 1.34996 0.90770 1.25545 0.98023 0.99557 1.03688 1.69815 1.16139 1.18886 1.57222 0.85089 0.78691 0.79014 0.77078 1.19065 1.21845 1.22203 1.23202 1.00863 0.94663 0.96613 0.90324 0.90295 0.91842 0.92371 0.95041 0.90740 0.90955 0.74637 0.88885 0.84418 0.94904 0.91550 0.92394 0.89134 0.84035 0.74752 0.89553 0.93163 0.90229 0.89229 0.96512 0.95915 0.79516 0.94063 0.87974 0.88624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.70 9.38 71.98 0.68 -0.03 16 2 C 0.13 1.49 3.18 44.99 0.14 1.63 16 3 C -0.16 -1.83 9.48 71.98 0.68 -1.14 16 4 N -0.72 -7.12 5.08 -442.53 -2.25 -9.37 16 5 C 0.51 8.83 7.49 87.66 0.66 9.48 16 6 O -0.57 -16.47 13.99 -3.04 -0.04 -16.52 16 7 C 0.04 0.44 5.45 85.56 0.47 0.91 16 8 N -0.53 -10.79 4.24 -931.63 -3.95 -14.74 16 9 C 0.02 0.61 8.85 127.69 1.13 1.74 16 10 C 0.04 0.62 5.45 85.55 0.47 1.08 16 11 C 0.51 12.11 7.55 87.66 0.66 12.77 16 12 O -0.57 -19.60 13.93 -3.05 -0.04 -19.65 16 13 N -0.70 -14.22 5.26 -440.04 -2.32 -16.53 16 14 C 0.13 3.14 4.30 45.51 0.20 3.33 16 15 C -0.14 -4.35 7.45 31.21 0.23 -4.12 16 16 C -0.11 -3.19 3.65 -10.18 -0.04 -3.23 16 17 C 0.16 6.21 6.10 86.38 0.53 6.73 16 18 N -0.74 -38.00 5.60 -343.44 -1.92 -39.93 16 19 C -0.25 -13.87 9.99 84.03 0.84 -13.03 16 20 H 0.07 4.04 7.83 -2.91 -0.02 4.02 16 21 C -0.08 -4.40 5.50 84.86 0.47 -3.94 16 22 N -0.97 -59.65 13.06 21.65 0.28 -59.36 16 23 Si 0.97 46.45 29.55 68.60 2.03 48.48 16 24 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 25 H -0.29 -13.80 7.11 99.48 0.71 -13.09 16 26 H -0.29 -14.13 7.11 99.48 0.71 -13.42 16 27 C -0.12 -2.48 7.38 31.12 0.23 -2.26 16 28 H 0.08 0.13 8.14 -2.39 -0.02 0.11 16 29 H 0.08 0.30 8.14 -2.39 -0.02 0.28 16 30 H 0.06 0.30 8.14 -2.39 -0.02 0.28 16 31 H 0.06 1.00 7.58 -2.38 -0.02 0.98 16 32 H 0.03 0.56 8.14 -2.38 -0.02 0.54 16 33 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 34 H 0.07 0.59 8.14 -2.38 -0.02 0.57 16 35 H 0.42 1.01 8.60 -92.71 -0.80 0.21 16 36 H 0.09 0.59 8.12 -2.39 -0.02 0.57 16 37 H 0.14 0.66 7.93 -2.39 -0.02 0.64 16 38 H 0.03 0.67 8.14 -2.39 -0.02 0.65 16 39 H 0.07 1.88 5.82 -2.39 -0.01 1.87 16 40 H 0.06 1.82 5.88 -2.39 -0.01 1.80 16 41 H 0.09 0.96 8.12 -2.39 -0.02 0.95 16 42 H 0.14 1.05 7.93 -2.39 -0.02 1.03 16 43 H 0.42 5.86 8.70 -92.71 -0.81 5.05 16 44 H 0.09 2.39 7.50 -2.39 -0.02 2.37 16 45 H 0.05 1.67 8.14 -2.38 -0.02 1.65 16 46 H 0.08 2.54 7.90 -2.39 -0.02 2.52 16 47 H 0.09 2.63 8.14 -2.38 -0.02 2.61 16 48 H 0.02 0.68 7.85 -2.38 -0.02 0.66 16 49 H 0.02 0.88 8.14 -2.39 -0.02 0.86 16 50 H 0.37 20.20 7.67 -92.71 -0.71 19.49 16 51 H 0.25 14.89 8.31 -92.71 -0.77 14.12 16 52 H 0.10 2.11 8.10 -2.39 -0.02 2.09 16 53 H 0.10 1.63 8.14 -2.39 -0.02 1.61 16 Total: -1.00 -84.94 426.65 -2.27 -87.22 By element: Atomic # 1 Polarization: 31.84 SS G_CDS: -1.40 Total: 30.44 kcal Atomic # 6 Polarization: 2.62 SS G_CDS: 7.34 Total: 9.95 kcal Atomic # 7 Polarization: -129.77 SS G_CDS: -10.15 Total: -139.92 kcal Atomic # 8 Polarization: -36.08 SS G_CDS: -0.08 Total: -36.16 kcal Atomic # 14 Polarization: 46.45 SS G_CDS: 2.03 Total: 48.48 kcal Total: -84.94 -2.27 -87.22 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001505506255.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.261 kcal (2) G-P(sol) polarization free energy of solvation -84.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.682 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.216 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds