Wall clock time and date at job start Sat Apr 11 2020 06:11:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47005 * 2 1 4 4 H 1.09005 * 109.46737 * 57.10969 * 3 2 1 5 5 C 1.50702 * 109.47030 * 177.10570 * 3 2 1 6 6 O 1.21277 * 119.99446 * 99.71244 * 5 3 2 7 7 N 1.34773 * 120.00254 * 279.71181 * 5 3 2 8 8 C 1.46496 * 119.99686 * 179.97438 * 7 5 3 9 9 H 1.08998 * 112.85230 * 336.19427 * 8 7 5 10 10 C 1.53779 * 113.61771 * 107.50423 * 8 7 5 11 11 C 1.53784 * 87.08119 * 89.11057 * 10 8 7 12 12 H 1.08993 * 113.62080 * 270.88730 * 11 10 8 13 13 C 1.53006 * 113.68953 * 139.99476 * 11 10 8 14 14 N 1.46895 * 109.47109 * 87.46849 * 13 11 10 15 15 C 1.46904 * 110.99863 * 180.02562 * 14 13 11 16 16 C 1.50701 * 109.47081 * 179.97438 * 15 14 13 17 17 O 1.21297 * 120.00030 * 0.02562 * 16 15 14 18 18 N 1.34771 * 120.00137 * 179.97438 * 16 15 14 19 19 C 1.37099 * 120.00379 * 179.97438 * 18 16 15 20 20 H 1.07997 * 119.99694 * 0.02562 * 19 18 16 21 21 C 1.38947 * 120.00398 * 180.02562 * 19 18 16 22 22 N 1.31408 * 120.00066 * 180.02562 * 21 19 18 23 23 Si 1.86806 * 119.99738 * 359.97438 * 21 19 18 24 24 H 1.48500 * 109.46995 * 90.00514 * 23 21 19 25 25 H 1.48500 * 109.47024 * 210.00109 * 23 21 19 26 26 H 1.48501 * 109.47088 * 330.00385 * 23 21 19 27 27 C 1.53781 * 113.61250 * 205.00113 * 8 7 5 28 28 N 1.46898 * 109.47690 * 297.11249 * 3 2 1 29 29 C 1.46893 * 111.00392 * 184.53682 * 28 3 2 30 30 C 1.46905 * 110.99673 * 308.49483 * 28 3 2 31 31 H 1.09006 * 109.47455 * 295.79005 * 1 2 3 32 32 H 1.09003 * 109.47279 * 55.78718 * 1 2 3 33 33 H 1.08996 * 109.47239 * 175.79133 * 1 2 3 34 34 H 1.08994 * 109.47091 * 120.00188 * 2 1 3 35 35 H 1.09000 * 109.46567 * 240.00371 * 2 1 3 36 36 H 0.97001 * 120.00107 * 0.02562 * 7 5 3 37 37 H 1.08991 * 113.61788 * 203.66309 * 10 8 7 38 38 H 1.09000 * 113.60896 * 334.57092 * 10 8 7 39 39 H 1.09004 * 109.47259 * 207.47006 * 13 11 10 40 40 H 1.09001 * 109.46946 * 327.46519 * 13 11 10 41 41 H 1.00903 * 111.00179 * 303.95203 * 14 13 11 42 42 H 1.09006 * 109.46805 * 299.99692 * 15 14 13 43 43 H 1.08994 * 109.47178 * 59.99504 * 15 14 13 44 44 H 0.97003 * 119.99742 * 0.02562 * 18 16 15 45 45 H 0.97000 * 119.99820 * 179.97438 * 22 21 19 46 46 H 1.09005 * 113.61895 * 25.43386 * 27 8 7 47 47 H 1.08998 * 113.61712 * 156.33471 * 27 8 7 48 48 H 1.08998 * 109.47036 * 66.35084 * 29 28 3 49 49 H 1.08999 * 109.47260 * 186.35011 * 29 28 3 50 50 H 1.09000 * 109.47308 * 306.34872 * 29 28 3 51 51 H 1.09001 * 109.47465 * 66.67238 * 30 28 3 52 52 H 1.09000 * 109.47140 * 186.68052 * 30 28 3 53 53 H 1.09005 * 109.46911 * 306.67378 * 30 28 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6349 1.9710 0.8630 5 6 3.5453 1.4431 0.0717 6 8 4.2002 1.6031 -0.9364 7 7 4.1636 1.2659 1.2561 8 6 5.6269 1.2659 1.3256 9 1 6.0958 1.0048 0.3769 10 6 6.2127 2.5298 1.9771 11 6 6.0955 1.7950 3.3229 12 1 5.1349 1.9396 3.8172 13 6 7.2851 2.0286 4.2564 14 7 7.0495 3.2376 5.0567 15 6 8.1741 3.4942 5.9664 16 6 7.8973 4.7397 6.7685 17 8 6.8646 5.3530 6.5993 18 7 8.7968 5.1715 7.6745 19 6 8.5453 6.3048 8.4038 20 1 7.6262 6.8514 8.2526 21 6 9.4729 6.7503 9.3375 22 7 9.2315 7.8364 10.0369 23 14 11.0624 5.8046 9.5996 24 1 12.1063 6.3270 8.6816 25 1 11.5112 5.9708 11.0053 26 1 10.8332 4.3642 9.3200 27 6 6.1866 0.4834 2.5253 28 7 1.6082 2.1147 -1.2327 29 6 2.1699 3.4693 -1.3183 30 6 1.9637 1.3215 -2.4170 31 1 -0.3634 0.4471 0.9253 32 1 -0.3634 0.5778 -0.8498 33 1 -0.3633 -1.0248 -0.0754 34 1 1.8933 -0.5138 0.8899 35 1 1.8932 -0.5138 -0.8900 36 1 3.6397 1.1375 2.0623 37 1 7.2409 2.7372 1.6809 38 1 5.5641 3.4022 1.8981 39 1 7.4008 1.1709 4.9192 40 1 8.1918 2.1553 3.6648 41 1 6.8751 4.0354 4.4640 42 1 8.2962 2.6468 6.6411 43 1 9.0866 3.6313 5.3864 44 1 9.6225 4.6808 7.8100 45 1 9.8789 8.1471 10.6889 46 1 5.5171 -0.2962 2.8889 47 1 7.2077 0.1314 2.3790 48 1 3.2525 3.4074 -1.4279 49 1 1.7463 3.9845 -2.1804 50 1 1.9275 4.0211 -0.4101 51 1 1.3868 0.3967 -2.4216 52 1 1.7407 1.8934 -3.3177 53 1 3.0276 1.0858 -2.3905 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001506897759.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:13 Heat of formation + Delta-G solvation = -65.903399 kcal Electronic energy + Delta-G solvation = -29529.242168 eV Core-core repulsion = 25435.714874 eV Total energy + Delta-G solvation = -4093.527293 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.226 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -41.75446 -40.42315 -40.02226 -37.69528 -36.54425 -35.83071 -34.62857 -33.75763 -33.48100 -30.06577 -28.81739 -28.28552 -27.21789 -26.64594 -25.18565 -24.24350 -23.25786 -22.59290 -21.31583 -20.94908 -20.41068 -20.01053 -18.45981 -17.83661 -17.39489 -17.18065 -16.69347 -16.55288 -16.35072 -16.13400 -15.78350 -15.64200 -15.54561 -15.08899 -15.01798 -14.78494 -14.54065 -14.21612 -14.00246 -13.95813 -13.84428 -13.40810 -13.29081 -13.15632 -13.07389 -12.89034 -12.77948 -12.66500 -12.59149 -12.43608 -12.41720 -11.98998 -11.92220 -11.82464 -11.66364 -11.52201 -11.43566 -11.26222 -11.09008 -10.43876 -10.25829 -10.04369 -9.31082 -9.18818 -8.41995 -6.03172 1.30007 1.35258 1.44563 1.48629 1.94928 2.12448 2.22654 2.73173 2.91695 3.14477 3.38154 3.54658 3.68656 3.73801 3.83651 3.93611 3.96183 4.05408 4.17075 4.23147 4.41617 4.47281 4.48475 4.51378 4.56181 4.59667 4.65370 4.67694 4.77038 4.79872 4.82055 4.85330 4.89653 4.93173 4.99227 5.05920 5.08517 5.16274 5.18303 5.25312 5.32985 5.52111 5.53410 5.65573 5.87518 5.90701 5.94744 6.08236 6.39709 6.49660 6.59157 6.87254 7.18248 7.38954 7.95706 8.75664 Molecular weight = 340.23amu Principal moments of inertia in cm(-1) A = 0.022472 B = 0.001648 C = 0.001609 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1245.703428 B =16991.064192 C =17398.157619 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.109 4.109 3 C 0.065 3.935 4 H 0.118 0.882 5 C 0.488 3.512 6 O -0.574 6.574 7 N -0.699 5.699 8 C 0.117 3.883 9 H 0.085 0.915 10 C -0.152 4.152 11 C -0.101 4.101 12 H 0.092 0.908 13 C 0.070 3.930 14 N -0.687 5.687 15 C 0.061 3.939 16 C 0.446 3.554 17 O -0.616 6.616 18 N -0.591 5.591 19 C -0.330 4.330 20 H 0.054 0.946 21 C -0.016 4.016 22 N -0.934 5.934 23 Si 0.966 3.034 24 H -0.257 1.257 25 H -0.275 1.275 26 H -0.230 1.230 27 C -0.119 4.119 28 N -0.514 5.514 29 C 0.012 3.988 30 C 0.005 3.995 31 H 0.060 0.940 32 H 0.058 0.942 33 H 0.062 0.938 34 H 0.085 0.915 35 H 0.063 0.937 36 H 0.413 0.587 37 H 0.090 0.910 38 H 0.052 0.948 39 H 0.085 0.915 40 H 0.042 0.958 41 H 0.341 0.659 42 H 0.115 0.885 43 H 0.075 0.925 44 H 0.390 0.610 45 H 0.279 0.721 46 H 0.089 0.911 47 H 0.107 0.893 48 H 0.026 0.974 49 H 0.076 0.924 50 H 0.068 0.932 51 H 0.078 0.922 52 H 0.065 0.935 53 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.110 -23.417 -21.674 33.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.147 4.147 3 C -0.048 4.048 4 H 0.136 0.864 5 C 0.275 3.725 6 O -0.454 6.454 7 N -0.350 5.350 8 C 0.011 3.989 9 H 0.103 0.897 10 C -0.191 4.191 11 C -0.120 4.120 12 H 0.110 0.890 13 C -0.058 4.058 14 N -0.319 5.319 15 C -0.071 4.071 16 C 0.235 3.765 17 O -0.500 6.500 18 N -0.232 5.232 19 C -0.460 4.460 20 H 0.072 0.928 21 C -0.214 4.214 22 N -0.575 5.575 23 Si 0.786 3.214 24 H -0.182 1.182 25 H -0.200 1.200 26 H -0.153 1.153 27 C -0.157 4.157 28 N -0.236 5.236 29 C -0.136 4.136 30 C -0.143 4.143 31 H 0.079 0.921 32 H 0.078 0.922 33 H 0.081 0.919 34 H 0.104 0.896 35 H 0.082 0.918 36 H 0.250 0.750 37 H 0.108 0.892 38 H 0.071 0.929 39 H 0.103 0.897 40 H 0.060 0.940 41 H 0.159 0.841 42 H 0.133 0.867 43 H 0.093 0.907 44 H 0.226 0.774 45 H 0.089 0.911 46 H 0.108 0.892 47 H 0.126 0.874 48 H 0.044 0.956 49 H 0.095 0.905 50 H 0.087 0.913 51 H 0.097 0.903 52 H 0.084 0.916 53 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -10.186 -23.032 -21.869 33.354 hybrid contribution 2.177 0.872 0.259 2.359 sum -8.009 -22.160 -21.611 31.972 Atomic orbital electron populations 1.21647 0.93385 1.02019 1.02741 1.21574 0.98107 0.91801 1.03254 1.22156 0.87507 0.99075 0.96012 0.86409 1.22459 0.92420 0.74664 0.83000 1.90613 1.68340 1.50761 1.35651 1.45860 1.06708 1.72132 1.10331 1.21782 0.80629 0.97179 0.99276 0.89724 1.23524 1.01562 0.97286 0.96702 1.22543 0.99293 0.96746 0.93391 0.88970 1.22067 0.96600 0.92361 0.94792 1.60114 1.40643 1.07611 1.23538 1.21642 0.93953 0.95127 0.96376 1.21061 0.84144 0.88400 0.82945 1.90542 1.28681 1.60692 1.70107 1.42035 1.19915 1.24944 1.36336 1.19012 1.05897 1.02841 1.18220 0.92769 1.26140 1.02901 0.97347 0.95044 1.69806 1.38234 1.24352 1.25089 0.85348 0.77113 0.80011 0.78934 1.18189 1.19996 1.15335 1.23252 1.03067 0.96126 0.93250 1.62546 1.56461 1.02781 1.01820 1.22529 0.98114 0.89941 1.03049 1.22675 1.00810 0.98582 0.92203 0.92108 0.92241 0.91923 0.89633 0.91797 0.74968 0.89156 0.92929 0.89679 0.94017 0.84114 0.86725 0.90721 0.77435 0.91131 0.89242 0.87418 0.95555 0.90518 0.91271 0.90348 0.91645 0.93777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.25 9.72 71.98 0.70 -0.56 16 2 C -0.11 -1.10 4.91 30.59 0.15 -0.95 16 3 C 0.06 0.89 2.33 44.17 0.10 0.99 16 4 H 0.12 1.33 8.14 -2.38 -0.02 1.31 16 5 C 0.49 8.75 6.23 87.66 0.55 9.29 16 6 O -0.57 -14.58 11.59 -3.02 -0.04 -14.61 16 7 N -0.70 -9.78 5.26 -440.06 -2.32 -12.09 16 8 C 0.12 1.79 4.32 45.52 0.20 1.98 16 9 H 0.08 1.59 7.46 -2.39 -0.02 1.57 16 10 C -0.15 -2.65 7.43 31.12 0.23 -2.41 16 11 C -0.10 -1.57 3.77 -10.26 -0.04 -1.61 16 12 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 13 C 0.07 1.28 5.52 86.31 0.48 1.76 16 14 N -0.69 -19.31 6.13 -517.92 -3.17 -22.49 16 15 C 0.06 1.82 6.17 85.56 0.53 2.35 16 16 C 0.45 20.12 7.82 87.66 0.69 20.80 16 17 O -0.62 -34.31 15.78 -3.08 -0.05 -34.36 16 18 N -0.59 -27.79 5.09 -306.99 -1.56 -29.36 16 19 C -0.33 -19.44 10.16 84.04 0.85 -18.58 16 20 H 0.05 3.80 7.39 -2.91 -0.02 3.78 16 21 C -0.02 -0.87 5.50 84.93 0.47 -0.41 16 22 N -0.93 -56.41 13.96 21.66 0.30 -56.11 16 23 Si 0.97 38.52 27.74 68.60 1.90 40.42 16 24 H -0.26 -9.72 7.11 99.48 0.71 -9.01 16 25 H -0.27 -10.89 7.11 99.48 0.71 -10.18 16 26 H -0.23 -7.66 6.52 99.48 0.65 -7.01 16 27 C -0.12 -1.28 7.39 31.12 0.23 -1.05 16 28 N -0.51 -8.41 4.37 -927.73 -4.05 -12.46 16 29 C 0.01 0.21 9.02 127.69 1.15 1.37 16 30 C 0.01 0.08 8.54 127.69 1.09 1.17 16 31 H 0.06 0.49 8.14 -2.38 -0.02 0.48 16 32 H 0.06 0.67 7.43 -2.39 -0.02 0.66 16 33 H 0.06 0.46 8.14 -2.39 -0.02 0.44 16 34 H 0.09 0.61 8.14 -2.39 -0.02 0.59 16 35 H 0.06 0.76 6.29 -2.39 -0.02 0.74 16 36 H 0.41 3.90 8.70 -92.71 -0.81 3.09 16 37 H 0.09 1.53 7.90 -2.39 -0.02 1.51 16 38 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 39 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 40 H 0.04 0.68 7.85 -2.39 -0.02 0.66 16 41 H 0.34 10.63 8.43 -89.69 -0.76 9.87 16 42 H 0.11 2.84 8.14 -2.38 -0.02 2.82 16 43 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 44 H 0.39 15.06 5.76 -92.71 -0.53 14.53 16 45 H 0.28 15.38 8.31 -92.71 -0.77 14.61 16 46 H 0.09 0.75 8.14 -2.38 -0.02 0.73 16 47 H 0.11 0.95 8.10 -2.39 -0.02 0.93 16 48 H 0.03 0.60 5.94 -2.39 -0.01 0.59 16 49 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 50 H 0.07 1.14 8.12 -2.39 -0.02 1.12 16 51 H 0.08 1.06 6.32 -2.39 -0.02 1.04 16 52 H 0.06 1.01 8.07 -2.39 -0.02 0.99 16 53 H 0.04 0.94 5.38 -2.38 -0.01 0.93 16 Total: -1.00 -80.25 416.50 -2.84 -83.09 By element: Atomic # 1 Polarization: 45.06 SS G_CDS: -1.23 Total: 43.83 kcal Atomic # 6 Polarization: 6.78 SS G_CDS: 7.37 Total: 14.15 kcal Atomic # 7 Polarization: -121.71 SS G_CDS: -10.80 Total: -132.51 kcal Atomic # 8 Polarization: -48.89 SS G_CDS: -0.08 Total: -48.98 kcal Atomic # 14 Polarization: 38.52 SS G_CDS: 1.90 Total: 40.42 kcal Total: -80.25 -2.84 -83.09 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001506897759.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.185 kcal (2) G-P(sol) polarization free energy of solvation -80.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.839 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.088 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.903 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds