Wall clock time and date at job start Sat Apr 11 2020 06:11:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52992 * 109.47240 * 2 1 4 4 N 1.46500 * 109.47206 * 120.00260 * 2 1 3 5 5 C 1.46503 * 120.00203 * 118.37711 * 4 2 1 6 6 C 1.53000 * 109.46910 * 88.88182 * 5 4 2 7 7 N 1.46495 * 109.47102 * 180.02562 * 6 5 4 8 8 C 1.46499 * 120.00245 * 89.99587 * 7 6 5 9 9 C 1.36945 * 119.99968 * 270.27380 * 7 6 5 10 10 H 1.08000 * 119.99531 * 30.17334 * 9 7 6 11 11 C 1.38805 * 120.00214 * 210.17491 * 9 7 6 12 12 N 1.31625 * 119.99889 * 7.45060 * 11 9 7 13 13 Si 1.86794 * 120.00381 * 187.45423 * 11 9 7 14 14 H 1.48504 * 109.47094 * 359.97438 * 13 11 9 15 15 H 1.48495 * 109.47298 * 119.99708 * 13 11 9 16 16 H 1.48500 * 109.47412 * 240.00204 * 13 11 9 17 17 C 1.34781 * 119.99920 * 298.38129 * 4 2 1 18 18 O 1.21286 * 119.99761 * 3.77504 * 17 4 2 19 19 C 1.50697 * 120.00161 * 183.78067 * 17 4 2 20 20 H 1.09006 * 109.49682 * 40.06688 * 19 17 4 21 21 C 1.53040 * 109.49928 * 160.15938 * 19 17 4 22 22 C 1.53039 * 109.53925 * 181.31613 * 21 19 17 23 23 C 1.53192 * 109.31353 * 298.63857 * 22 21 19 24 24 N 1.46932 * 108.77600 * 54.63348 * 23 22 21 25 25 C 1.34773 * 120.62737 * 126.41591 * 24 23 22 26 26 N 1.34778 * 120.00353 * 5.86881 * 25 24 23 27 27 O 1.21593 * 119.99638 * 185.87523 * 25 24 23 28 28 C 1.46923 * 118.73582 * 306.39496 * 24 23 22 29 29 H 1.09007 * 109.47101 * 305.68495 * 1 2 3 30 30 H 1.08994 * 109.47442 * 65.68364 * 1 2 3 31 31 H 1.09004 * 109.47432 * 185.68726 * 1 2 3 32 32 H 1.09005 * 109.46880 * 240.00039 * 2 1 3 33 33 H 1.09001 * 109.47131 * 183.91206 * 3 2 1 34 34 H 1.09008 * 109.47214 * 303.91201 * 3 2 1 35 35 H 1.09004 * 109.47533 * 63.90950 * 3 2 1 36 36 H 1.09000 * 109.46931 * 328.87856 * 5 4 2 37 37 H 1.08996 * 109.46862 * 208.87741 * 5 4 2 38 38 H 1.08999 * 109.47072 * 59.99997 * 6 5 4 39 39 H 1.09004 * 109.46963 * 299.99835 * 6 5 4 40 40 H 1.08996 * 109.47023 * 85.44975 * 8 7 6 41 41 H 1.08996 * 109.47465 * 205.45023 * 8 7 6 42 42 H 1.09000 * 109.46996 * 325.45104 * 8 7 6 43 43 H 0.97000 * 120.00161 * 179.97438 * 12 11 9 44 44 H 1.09000 * 109.46275 * 301.34353 * 21 19 17 45 45 H 1.09002 * 109.45528 * 61.29902 * 21 19 17 46 46 H 1.09002 * 109.50085 * 178.68811 * 22 21 19 47 47 H 1.08998 * 109.52486 * 58.60848 * 22 21 19 48 48 H 1.09008 * 109.58534 * 294.84649 * 23 22 21 49 49 H 1.08999 * 109.70549 * 174.49155 * 23 22 21 50 50 H 0.96997 * 119.99642 * 4.83990 * 26 25 24 51 51 H 0.97001 * 119.99716 * 184.83773 * 26 25 24 52 52 H 1.09001 * 109.58632 * 293.81624 * 28 24 23 53 53 H 1.08996 * 109.70266 * 173.46804 * 28 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0184 -0.6907 1.1961 5 6 2.8311 -1.9022 1.0620 6 6 4.3085 -1.5169 0.9637 7 7 5.1211 -2.7283 0.8290 8 6 5.4248 -3.2626 -0.5009 9 6 5.5922 -3.3646 1.9464 10 1 5.0311 -3.3232 2.8682 11 6 6.7908 -4.0627 1.8941 12 7 7.5467 -3.9931 0.8188 13 14 7.3311 -5.1012 3.3498 14 1 6.3124 -5.0122 4.4266 15 1 7.4773 -6.5156 2.9218 16 1 8.6334 -4.6008 3.8586 17 6 1.7199 -0.2115 2.4200 18 8 0.9908 0.7512 2.5331 19 6 2.2921 -0.8717 3.6479 20 1 3.3289 -1.1517 3.4607 21 6 2.2303 0.1018 4.8271 22 6 2.8412 -0.5561 6.0665 23 6 2.0317 -1.8055 6.4279 24 7 1.9642 -2.6822 5.2507 25 6 2.3419 -3.9732 5.3335 26 7 2.6740 -4.5030 6.5274 27 8 2.3833 -4.6600 4.3309 28 6 1.4765 -2.1246 3.9818 29 1 -0.3634 0.5995 0.8348 30 1 -0.3634 0.4231 -0.9364 31 1 -0.3634 -1.0226 0.1018 32 1 1.8933 -0.5139 -0.8900 33 1 3.1278 1.4432 -0.0701 34 1 1.6206 1.9761 -0.8529 35 1 1.7351 1.9357 0.9230 36 1 2.5352 -2.4403 0.1615 37 1 2.6791 -2.5399 1.9328 38 1 4.6043 -0.9788 1.8643 39 1 4.4605 -0.8792 0.0929 40 1 6.3059 -2.7613 -0.9013 41 1 5.6177 -4.3328 -0.4272 42 1 4.5766 -3.0911 -1.1637 43 1 8.3844 -4.4806 0.7824 44 1 2.7896 1.0048 4.5823 45 1 1.1912 0.3620 5.0290 46 1 2.8180 0.1460 6.8999 47 1 3.8729 -0.8389 5.8577 48 1 1.0241 -1.5147 6.7253 49 1 2.5170 -2.3331 7.2490 50 1 2.5742 -3.9768 7.3361 51 1 3.0128 -5.4105 6.5779 52 1 0.4237 -1.8599 4.0797 53 1 1.5957 -2.8609 3.1870 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001507815337.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:20 Heat of formation + Delta-G solvation = -60.950449 kcal Electronic energy + Delta-G solvation = -33091.933671 eV Core-core repulsion = 28998.621154 eV Total energy + Delta-G solvation = -4093.312517 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.226 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.89403 -40.86321 -38.36987 -37.89661 -36.70655 -35.17908 -34.21475 -33.29612 -33.02748 -31.68709 -29.40759 -28.04680 -27.87826 -26.45895 -25.78607 -24.84160 -23.42443 -22.38055 -22.07597 -20.55433 -19.84064 -19.23108 -18.72608 -18.01141 -17.78095 -17.22618 -16.85837 -16.54962 -16.04430 -16.01763 -15.55325 -15.47330 -15.33433 -15.15142 -14.87800 -14.65411 -14.42773 -14.30810 -14.16373 -14.09338 -13.83896 -13.59285 -13.16959 -13.00336 -12.89090 -12.81154 -12.79691 -12.50602 -12.44968 -12.20681 -12.08678 -12.07237 -11.99281 -11.95581 -11.86063 -11.71377 -11.42447 -11.28851 -10.67994 -10.66582 -10.47285 -9.77743 -9.60152 -8.63645 -7.86156 -5.39383 1.39705 1.42992 1.47704 1.53960 1.80340 2.05087 2.17702 2.49897 3.23303 3.30445 3.40371 3.70262 3.82082 3.82145 3.93754 4.05018 4.06028 4.15255 4.18639 4.23364 4.37317 4.45599 4.51290 4.53780 4.65145 4.69201 4.73549 4.76405 4.80466 4.86782 4.88700 4.94073 4.97096 4.99898 5.02519 5.13285 5.18531 5.28105 5.36136 5.38959 5.40903 5.46280 5.62450 5.67922 5.75660 5.84387 6.00256 6.34428 6.45048 6.93773 7.15893 7.19105 7.64473 7.83555 8.29962 9.18466 Molecular weight = 340.23amu Principal moments of inertia in cm(-1) A = 0.007943 B = 0.005920 C = 0.003858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3524.290019 B = 4728.802405 C = 7256.671137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.134 3.866 3 C -0.160 4.160 4 N -0.599 5.599 5 C 0.097 3.903 6 C 0.148 3.852 7 N -0.611 5.611 8 C 0.176 3.824 9 C -0.247 4.247 10 H 0.056 0.944 11 C -0.045 4.045 12 N -0.936 5.936 13 Si 0.961 3.039 14 H -0.273 1.273 15 H -0.292 1.292 16 H -0.287 1.287 17 C 0.528 3.472 18 O -0.555 6.555 19 C -0.122 4.122 20 H 0.079 0.921 21 C -0.091 4.091 22 C -0.131 4.131 23 C 0.106 3.894 24 N -0.624 5.624 25 C 0.697 3.303 26 N -0.849 5.849 27 O -0.636 6.636 28 C 0.148 3.852 29 H 0.060 0.940 30 H 0.082 0.918 31 H 0.049 0.951 32 H 0.094 0.906 33 H 0.046 0.954 34 H 0.083 0.917 35 H 0.059 0.941 36 H 0.076 0.924 37 H 0.071 0.929 38 H 0.035 0.965 39 H 0.046 0.954 40 H -0.002 1.002 41 H 0.024 0.976 42 H 0.028 0.972 43 H 0.249 0.751 44 H 0.062 0.938 45 H 0.080 0.920 46 H 0.111 0.889 47 H 0.052 0.948 48 H 0.095 0.905 49 H 0.104 0.896 50 H 0.413 0.587 51 H 0.417 0.583 52 H 0.080 0.920 53 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.464 8.219 10.504 19.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.032 3.968 3 C -0.218 4.218 4 N -0.331 5.331 5 C -0.028 4.028 6 C 0.020 3.980 7 N -0.335 5.335 8 C 0.031 3.969 9 C -0.378 4.378 10 H 0.073 0.927 11 C -0.240 4.240 12 N -0.582 5.582 13 Si 0.790 3.210 14 H -0.197 1.197 15 H -0.219 1.219 16 H -0.214 1.214 17 C 0.316 3.684 18 O -0.434 6.434 19 C -0.145 4.145 20 H 0.097 0.903 21 C -0.129 4.129 22 C -0.169 4.169 23 C -0.016 4.016 24 N -0.362 5.362 25 C 0.396 3.604 26 N -0.420 5.420 27 O -0.517 6.517 28 C 0.023 3.977 29 H 0.079 0.921 30 H 0.101 0.899 31 H 0.068 0.932 32 H 0.112 0.888 33 H 0.065 0.935 34 H 0.101 0.899 35 H 0.078 0.922 36 H 0.095 0.905 37 H 0.089 0.911 38 H 0.053 0.947 39 H 0.065 0.935 40 H 0.017 0.983 41 H 0.043 0.957 42 H 0.047 0.953 43 H 0.058 0.942 44 H 0.081 0.919 45 H 0.099 0.901 46 H 0.130 0.870 47 H 0.071 0.929 48 H 0.113 0.887 49 H 0.122 0.878 50 H 0.246 0.754 51 H 0.250 0.750 52 H 0.098 0.902 53 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -14.721 8.337 9.788 19.545 hybrid contribution 1.121 -1.070 0.600 1.662 sum -13.599 7.267 10.389 18.593 Atomic orbital electron populations 1.22101 0.94130 1.01889 1.03286 1.21240 0.95101 0.93561 0.86922 1.22109 1.00585 0.95748 1.03352 1.48214 1.51399 1.27445 1.06075 1.22363 0.91806 0.85746 1.02876 1.21100 0.89803 0.88013 0.99059 1.43941 1.59706 1.27019 1.02818 1.20530 0.94804 0.96956 0.84606 1.19251 1.00627 1.26873 0.91035 0.92663 1.25818 0.96050 1.02577 0.99587 1.70169 1.13139 1.45517 1.29411 0.85288 0.77561 0.78237 0.79945 1.19720 1.21893 1.21353 1.20482 0.79982 0.83391 0.84562 1.90575 1.37749 1.28291 1.86782 1.21743 1.00939 0.97253 0.94535 0.90291 1.21296 1.02649 0.96456 0.92542 1.21942 0.99021 0.97447 0.98494 1.22010 1.02247 0.90843 0.86474 1.47182 1.68729 1.08271 1.12024 1.16188 0.77624 0.82218 0.84328 1.42899 1.72238 1.19970 1.06912 1.90994 1.61891 1.61807 1.37030 1.21194 0.96800 0.93401 0.86289 0.92137 0.89944 0.93217 0.88796 0.93471 0.89857 0.92234 0.90516 0.91088 0.94697 0.93523 0.98334 0.95719 0.95341 0.94207 0.91891 0.90105 0.87034 0.92881 0.88735 0.87797 0.75398 0.75027 0.90167 0.90883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.61 9.05 71.98 0.65 -2.96 16 2 C 0.13 3.44 3.27 44.99 0.15 3.58 16 3 C -0.16 -3.95 9.15 71.98 0.66 -3.29 16 4 N -0.60 -18.01 2.42 -797.83 -1.93 -19.94 16 5 C 0.10 3.42 5.30 86.38 0.46 3.87 16 6 C 0.15 6.07 5.88 86.38 0.51 6.58 16 7 N -0.61 -31.13 2.90 -726.96 -2.11 -33.24 16 8 C 0.18 8.80 9.00 127.77 1.15 9.95 16 9 C -0.25 -13.99 9.59 84.03 0.81 -13.18 16 10 H 0.06 3.20 7.84 -2.91 -0.02 3.17 16 11 C -0.05 -2.60 5.13 84.86 0.44 -2.16 16 12 N -0.94 -56.46 10.95 21.65 0.24 -56.22 16 13 Si 0.96 47.02 29.56 68.60 2.03 49.05 16 14 H -0.27 -13.01 7.11 99.48 0.71 -12.30 16 15 H -0.29 -14.31 7.11 99.48 0.71 -13.60 16 16 H -0.29 -13.69 7.11 99.48 0.71 -12.98 16 17 C 0.53 16.07 6.25 87.66 0.55 16.61 16 18 O -0.55 -17.90 12.33 -3.05 -0.04 -17.94 16 19 C -0.12 -3.49 1.83 -11.47 -0.02 -3.52 16 20 H 0.08 2.74 6.13 -2.38 -0.01 2.72 16 21 C -0.09 -2.04 4.61 30.62 0.14 -1.90 16 22 C -0.13 -2.24 6.08 30.67 0.19 -2.05 16 23 C 0.11 1.63 6.34 86.36 0.55 2.18 16 24 N -0.62 -15.93 2.97 -836.91 -2.49 -18.41 16 25 C 0.70 21.71 8.57 179.06 1.53 23.25 16 26 N -0.85 -17.49 8.73 -184.74 -1.61 -19.10 16 27 O -0.64 -27.51 16.60 -4.01 -0.07 -27.58 16 28 C 0.15 4.22 5.47 86.36 0.47 4.69 16 29 H 0.06 1.61 6.34 -2.38 -0.02 1.60 16 30 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 31 H 0.05 1.17 8.14 -2.38 -0.02 1.15 16 32 H 0.09 2.24 7.82 -2.38 -0.02 2.22 16 33 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 34 H 0.08 1.64 8.14 -2.38 -0.02 1.62 16 35 H 0.06 1.69 6.08 -2.38 -0.01 1.67 16 36 H 0.08 2.62 7.96 -2.39 -0.02 2.60 16 37 H 0.07 2.79 4.58 -2.39 -0.01 2.77 16 38 H 0.03 1.50 6.90 -2.39 -0.02 1.48 16 39 H 0.05 1.82 8.07 -2.39 -0.02 1.80 16 40 H 0.00 -0.09 7.77 -2.39 -0.02 -0.11 16 41 H 0.02 1.34 7.05 -2.39 -0.02 1.32 16 42 H 0.03 1.19 8.11 -2.39 -0.02 1.17 16 43 H 0.25 14.53 8.31 -92.71 -0.77 13.76 16 44 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 45 H 0.08 1.70 7.95 -2.39 -0.02 1.69 16 46 H 0.11 1.22 8.14 -2.39 -0.02 1.20 16 47 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 48 H 0.09 1.05 8.14 -2.38 -0.02 1.03 16 49 H 0.10 1.04 5.75 -2.39 -0.01 1.02 16 50 H 0.41 4.93 6.43 -92.71 -0.60 4.34 16 51 H 0.42 8.29 8.93 -92.71 -0.83 7.47 16 52 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 53 H 0.07 2.58 4.88 -2.39 -0.01 2.57 16 Total: -1.00 -76.79 403.47 1.74 -75.05 By element: Atomic # 1 Polarization: 27.19 SS G_CDS: -0.50 Total: 26.69 kcal Atomic # 6 Polarization: 33.42 SS G_CDS: 8.22 Total: 41.64 kcal Atomic # 7 Polarization: -139.01 SS G_CDS: -7.91 Total: -146.91 kcal Atomic # 8 Polarization: -45.42 SS G_CDS: -0.10 Total: -45.52 kcal Atomic # 14 Polarization: 47.02 SS G_CDS: 2.03 Total: 49.05 kcal Total: -76.79 1.74 -75.05 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001507815337.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.103 kcal (2) G-P(sol) polarization free energy of solvation -76.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.690 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.054 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds