Wall clock time and date at job start Sat Apr 11 2020 06:11:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 109.47253 * 2 1 4 4 H 1.08992 * 109.47423 * 176.78590 * 3 2 1 5 5 C 1.50705 * 109.47111 * 296.78901 * 3 2 1 6 6 O 1.21276 * 120.00144 * 91.31061 * 5 3 2 7 7 N 1.34780 * 119.99317 * 271.30612 * 5 3 2 8 8 C 1.46491 * 120.00212 * 3.99198 * 7 5 3 9 9 C 1.46502 * 119.99603 * 183.98543 * 7 5 3 10 10 C 1.53782 * 113.61342 * 123.95640 * 9 7 5 11 11 C 1.53776 * 87.08268 * 140.06847 * 10 9 7 12 12 N 1.46895 * 113.61418 * 219.93919 * 11 10 9 13 13 C 1.46900 * 111.00108 * 203.46824 * 12 11 10 14 14 C 1.50697 * 109.47453 * 179.97438 * 13 12 11 15 15 O 1.21293 * 119.99796 * 0.02562 * 14 13 12 16 16 N 1.34778 * 120.00118 * 180.02562 * 14 13 12 17 17 C 1.37099 * 119.99893 * 180.02562 * 16 14 13 18 18 H 1.08002 * 120.00496 * 359.97438 * 17 16 14 19 19 C 1.38950 * 120.00091 * 179.97438 * 17 16 14 20 20 N 1.31420 * 119.99822 * 359.97438 * 19 17 16 21 21 Si 1.86802 * 120.00362 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.46767 * 0.02562 * 21 19 17 23 23 H 1.48501 * 109.47065 * 119.99563 * 21 19 17 24 24 H 1.48496 * 109.47147 * 239.99936 * 21 19 17 25 25 C 1.53777 * 113.69453 * 221.49315 * 9 7 5 26 26 N 1.46903 * 109.46999 * 56.78631 * 3 2 1 27 27 C 1.46897 * 111.00154 * 56.22175 * 26 3 2 28 28 C 1.46895 * 111.00053 * 180.18304 * 26 3 2 29 29 H 1.08996 * 109.47056 * 185.54010 * 1 2 3 30 30 H 1.09002 * 109.46674 * 305.53676 * 1 2 3 31 31 H 1.08995 * 109.47159 * 65.53619 * 1 2 3 32 32 H 1.09005 * 109.46800 * 240.00574 * 2 1 3 33 33 H 1.08998 * 109.47284 * 120.00174 * 2 1 3 34 34 H 1.09007 * 109.46854 * 183.14732 * 8 7 5 35 35 H 1.08997 * 109.47575 * 303.14554 * 8 7 5 36 36 H 1.09000 * 109.47493 * 63.15457 * 8 7 5 37 37 H 1.09004 * 112.85143 * 352.76628 * 9 7 5 38 38 H 1.09004 * 113.61201 * 25.51673 * 10 9 7 39 39 H 1.09006 * 113.61695 * 254.61842 * 10 9 7 40 40 H 1.09000 * 113.61795 * 89.11472 * 11 10 9 41 41 H 1.00907 * 111.00496 * 79.51706 * 12 11 10 42 42 H 1.08997 * 109.47042 * 300.00061 * 13 12 11 43 43 H 1.09004 * 109.47011 * 59.99693 * 13 12 11 44 44 H 0.97000 * 120.00303 * 359.97438 * 16 14 13 45 45 H 0.96998 * 119.99578 * 179.97438 * 20 19 17 46 46 H 1.09001 * 113.61369 * 105.46114 * 25 9 7 47 47 H 1.09002 * 113.61375 * 334.55865 * 25 9 7 48 48 H 1.09008 * 109.46815 * 61.97993 * 27 26 3 49 49 H 1.08998 * 109.47026 * 181.97776 * 27 26 3 50 50 H 1.08995 * 109.47002 * 301.98215 * 27 26 3 51 51 H 1.09004 * 109.47558 * 66.01904 * 28 26 3 52 52 H 1.09002 * 109.47369 * 186.01795 * 28 26 3 53 53 H 1.09001 * 109.47238 * 306.01944 * 28 26 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 3.1285 1.4431 0.0576 5 6 1.6038 2.1296 -1.2684 6 8 0.5555 2.7387 -1.2983 7 7 2.3787 2.0672 -2.3693 8 6 3.6010 1.2598 -2.3599 9 6 1.9986 2.8067 -3.5755 10 6 3.0871 3.7712 -4.0754 11 6 2.7127 3.3303 -5.5003 12 7 3.8715 3.1587 -6.3867 13 6 3.4801 3.2910 -7.7964 14 6 4.6921 3.1100 -8.6734 15 8 5.7754 2.8916 -8.1733 16 7 4.5725 3.1906 -10.0134 17 6 5.6751 3.0254 -10.8113 18 1 6.6396 2.8309 -10.3661 19 6 5.5516 3.1080 -12.1928 20 7 4.3778 3.3441 -12.7347 21 14 7.0540 2.8836 -13.2800 22 1 8.2458 2.6302 -12.4310 23 1 6.8395 1.7287 -14.1885 24 1 7.2710 4.1127 -14.0845 25 6 2.2112 2.0167 -4.8775 26 7 1.4880 2.1570 1.1588 27 6 1.8184 1.4639 2.4110 28 6 1.9538 3.5499 1.1892 29 1 -0.3633 -1.0228 0.0992 30 1 -0.3633 0.5973 0.8363 31 1 -0.3633 0.4256 -0.9354 32 1 1.8933 -0.5138 -0.8901 33 1 1.8934 -0.5138 0.8899 34 1 4.1205 1.3759 -3.3112 35 1 4.2495 1.5915 -1.5490 36 1 3.3427 0.2111 -2.2127 37 1 1.0121 3.2640 -3.4984 38 1 4.0957 3.4822 -3.7797 39 1 2.8690 4.8195 -3.8712 40 1 1.9215 3.9306 -5.9494 41 1 4.3268 2.2739 -6.2194 42 1 2.7379 2.5310 -8.0403 43 1 3.0553 4.2808 -7.9641 44 1 3.7061 3.3649 -10.4134 45 1 4.2918 3.4022 -13.6991 46 1 1.2860 1.6485 -5.3209 47 1 2.9804 1.2481 -4.8012 48 1 2.9009 1.4372 2.5368 49 1 1.3681 1.9947 3.2498 50 1 1.4315 0.4455 2.3756 51 1 1.5459 4.0882 0.3336 52 1 1.6184 4.0251 2.1110 53 1 3.0428 3.5699 1.1455 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001508141935.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:27 Heat of formation + Delta-G solvation = -55.327590 kcal Electronic energy + Delta-G solvation = -30153.233241 eV Core-core repulsion = 26060.164549 eV Total energy + Delta-G solvation = -4093.068692 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.226 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -41.72145 -40.39030 -39.75739 -37.94840 -36.32692 -35.85793 -34.33882 -33.67370 -33.20744 -29.19583 -28.51565 -28.13537 -27.83537 -26.65870 -26.07978 -24.47659 -24.10746 -22.16018 -21.23389 -20.39738 -19.90334 -19.75231 -18.40072 -17.81248 -17.50229 -16.95480 -16.76908 -16.65087 -16.35807 -16.00078 -15.82830 -15.71386 -15.41878 -14.91216 -14.68755 -14.55168 -14.29018 -14.20462 -13.97878 -13.73885 -13.52929 -13.43766 -13.34192 -13.23487 -13.15871 -13.06654 -13.01806 -12.81983 -12.56767 -12.40843 -12.32806 -12.12253 -12.04818 -11.97302 -11.91936 -11.78917 -11.65579 -11.51036 -10.59283 -10.33120 -10.01326 -9.61234 -9.27609 -9.23862 -8.46701 -5.95444 1.36879 1.42270 1.56387 1.57829 1.90776 2.05433 2.29471 2.92491 2.98617 3.20716 3.40474 3.46233 3.63495 3.72548 3.86769 3.94243 3.97904 3.98252 4.21016 4.24710 4.33413 4.35482 4.40886 4.47870 4.53494 4.55234 4.61851 4.63899 4.64070 4.68941 4.72904 4.76707 4.82615 4.92815 4.97014 4.99346 5.01893 5.04706 5.11396 5.14383 5.18955 5.41438 5.50582 5.58102 5.90134 5.92771 6.05275 6.13486 6.39996 6.45118 6.60107 7.12731 7.20786 7.56565 8.11452 8.70846 Molecular weight = 340.23amu Principal moments of inertia in cm(-1) A = 0.031750 B = 0.001686 C = 0.001683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 881.687809 B =16604.146877 C =16628.080850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.110 4.110 3 C 0.070 3.930 4 H 0.077 0.923 5 C 0.517 3.483 6 O -0.561 6.561 7 N -0.604 5.604 8 C 0.066 3.934 9 C 0.126 3.874 10 C -0.130 4.130 11 C 0.070 3.930 12 N -0.666 5.666 13 C 0.064 3.936 14 C 0.438 3.562 15 O -0.623 6.623 16 N -0.574 5.574 17 C -0.333 4.333 18 H 0.079 0.921 19 C -0.014 4.014 20 N -0.921 5.921 21 Si 0.993 3.007 22 H -0.273 1.273 23 H -0.271 1.271 24 H -0.272 1.272 25 C -0.168 4.168 26 N -0.541 5.541 27 C 0.022 3.978 28 C 0.025 3.975 29 H 0.063 0.937 30 H 0.060 0.940 31 H 0.027 0.973 32 H 0.078 0.922 33 H 0.097 0.903 34 H 0.085 0.915 35 H 0.075 0.925 36 H 0.078 0.922 37 H 0.105 0.895 38 H 0.089 0.911 39 H 0.070 0.930 40 H 0.108 0.892 41 H 0.347 0.653 42 H 0.068 0.932 43 H 0.102 0.898 44 H 0.396 0.604 45 H 0.277 0.723 46 H 0.076 0.924 47 H 0.096 0.904 48 H 0.036 0.964 49 H 0.076 0.924 50 H 0.083 0.917 51 H 0.048 0.952 52 H 0.080 0.920 53 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.228 -6.522 27.816 29.471 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.148 4.148 3 C -0.042 4.042 4 H 0.095 0.905 5 C 0.306 3.694 6 O -0.439 6.439 7 N -0.336 5.336 8 C -0.076 4.076 9 C 0.021 3.979 10 C -0.170 4.170 11 C -0.041 4.041 12 N -0.297 5.297 13 C -0.068 4.068 14 C 0.225 3.775 15 O -0.510 6.510 16 N -0.211 5.211 17 C -0.463 4.463 18 H 0.097 0.903 19 C -0.214 4.214 20 N -0.562 5.562 21 Si 0.817 3.183 22 H -0.197 1.197 23 H -0.196 1.196 24 H -0.197 1.197 25 C -0.208 4.208 26 N -0.267 5.267 27 C -0.125 4.125 28 C -0.123 4.123 29 H 0.082 0.918 30 H 0.079 0.921 31 H 0.046 0.954 32 H 0.097 0.903 33 H 0.116 0.884 34 H 0.104 0.896 35 H 0.094 0.906 36 H 0.097 0.903 37 H 0.123 0.877 38 H 0.107 0.893 39 H 0.089 0.911 40 H 0.126 0.874 41 H 0.167 0.833 42 H 0.086 0.914 43 H 0.120 0.880 44 H 0.230 0.770 45 H 0.087 0.913 46 H 0.095 0.905 47 H 0.115 0.885 48 H 0.054 0.946 49 H 0.095 0.905 50 H 0.101 0.899 51 H 0.067 0.933 52 H 0.099 0.901 53 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -7.413 -5.667 27.934 29.452 hybrid contribution 0.585 -0.490 -1.224 1.442 sum -6.828 -6.157 26.711 28.249 Atomic orbital electron populations 1.21614 0.95384 1.01287 1.01554 1.21594 0.96913 0.92082 1.04166 1.21775 0.98453 0.95439 0.88534 0.90519 1.20900 0.83409 0.79869 0.85258 1.90662 1.24485 1.44150 1.84560 1.47915 1.25137 1.48404 1.12133 1.22054 0.85742 0.95463 1.04308 1.22307 0.99114 0.93533 0.82929 1.23489 0.99384 0.99641 0.94473 1.22900 0.91913 0.97017 0.92247 1.60012 1.26338 1.41186 1.02208 1.21583 0.93585 1.03303 0.88351 1.20898 0.91269 0.82383 0.82912 1.90485 1.30524 1.55458 1.74495 1.41952 1.10954 1.63180 1.05018 1.19713 0.90074 1.47829 0.88674 0.90253 1.26052 1.00964 0.96381 0.97955 1.69683 1.24363 1.49189 1.12918 0.84863 0.77499 0.78271 0.77652 1.19738 1.19589 1.19708 1.24146 1.02720 0.98105 0.95809 1.61682 1.60115 1.02445 1.02420 1.22540 0.99526 1.00276 0.90182 1.22382 0.97734 0.89294 1.02898 0.91836 0.92051 0.95403 0.90308 0.88415 0.89648 0.90608 0.90320 0.87742 0.89280 0.91110 0.87448 0.83269 0.91413 0.87952 0.76986 0.91329 0.90544 0.88529 0.94571 0.90525 0.89861 0.93290 0.90083 0.95034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.28 9.27 71.98 0.67 -1.61 16 2 C -0.11 -1.30 5.13 30.60 0.16 -1.14 16 3 C 0.07 1.05 1.51 44.17 0.07 1.11 16 4 H 0.08 0.90 6.51 -2.39 -0.02 0.88 16 5 C 0.52 10.97 5.14 87.66 0.45 11.42 16 6 O -0.56 -16.46 14.34 -3.02 -0.04 -16.50 16 7 N -0.60 -10.88 3.09 -819.65 -2.53 -13.41 16 8 C 0.07 0.79 8.62 127.77 1.10 1.89 16 9 C 0.13 2.50 4.23 45.52 0.19 2.70 16 10 C -0.13 -2.70 7.37 31.12 0.23 -2.47 16 11 C 0.07 1.55 4.16 45.44 0.19 1.74 16 12 N -0.67 -19.79 6.24 -492.87 -3.07 -22.87 16 13 C 0.06 2.13 6.02 85.56 0.52 2.64 16 14 C 0.44 20.51 7.82 87.66 0.69 21.20 16 15 O -0.62 -33.98 15.78 -3.07 -0.05 -34.03 16 16 N -0.57 -29.24 5.29 -306.98 -1.62 -30.87 16 17 C -0.33 -18.86 9.68 84.04 0.81 -18.05 16 18 H 0.08 4.79 7.16 -2.91 -0.02 4.77 16 19 C -0.01 -0.74 5.50 84.93 0.47 -0.27 16 20 N -0.92 -49.54 13.05 21.66 0.28 -49.26 16 21 Si 0.99 42.73 29.55 68.60 2.03 44.76 16 22 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 23 H -0.27 -11.11 7.11 99.48 0.71 -10.41 16 24 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 25 C -0.17 -3.14 7.10 31.12 0.22 -2.92 16 26 N -0.54 -8.79 3.65 -927.73 -3.38 -12.18 16 27 C 0.02 0.22 8.95 127.69 1.14 1.36 16 28 C 0.03 0.42 9.17 127.69 1.17 1.59 16 29 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 30 H 0.06 1.12 7.07 -2.39 -0.02 1.11 16 31 H 0.03 0.60 7.10 -2.39 -0.02 0.58 16 32 H 0.08 0.81 6.98 -2.38 -0.02 0.79 16 33 H 0.10 0.73 6.49 -2.39 -0.02 0.72 16 34 H 0.08 1.07 5.68 -2.38 -0.01 1.06 16 35 H 0.08 0.70 7.09 -2.39 -0.02 0.69 16 36 H 0.08 0.68 6.98 -2.39 -0.02 0.67 16 37 H 0.10 2.45 7.18 -2.39 -0.02 2.44 16 38 H 0.09 1.88 7.15 -2.38 -0.02 1.86 16 39 H 0.07 1.49 8.14 -2.38 -0.02 1.47 16 40 H 0.11 2.24 7.88 -2.39 -0.02 2.22 16 41 H 0.35 10.57 7.92 -89.69 -0.71 9.86 16 42 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 43 H 0.10 3.11 8.13 -2.38 -0.02 3.09 16 44 H 0.40 19.19 7.90 -92.71 -0.73 18.46 16 45 H 0.28 13.94 8.31 -92.71 -0.77 13.17 16 46 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 47 H 0.10 1.70 6.03 -2.39 -0.01 1.68 16 48 H 0.04 0.29 8.14 -2.38 -0.02 0.27 16 49 H 0.08 0.70 8.09 -2.39 -0.02 0.68 16 50 H 0.08 0.68 6.00 -2.39 -0.01 0.66 16 51 H 0.05 1.09 6.59 -2.39 -0.02 1.07 16 52 H 0.08 1.12 8.04 -2.39 -0.02 1.11 16 53 H 0.03 0.45 8.12 -2.39 -0.02 0.43 16 Total: -1.00 -72.54 411.07 -0.84 -73.37 By element: Atomic # 1 Polarization: 42.30 SS G_CDS: -0.51 Total: 41.79 kcal Atomic # 6 Polarization: 11.12 SS G_CDS: 8.07 Total: 19.19 kcal Atomic # 7 Polarization: -118.25 SS G_CDS: -10.33 Total: -128.58 kcal Atomic # 8 Polarization: -50.43 SS G_CDS: -0.09 Total: -50.52 kcal Atomic # 14 Polarization: 42.73 SS G_CDS: 2.03 Total: 44.76 kcal Total: -72.54 -0.84 -73.37 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001508141935.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.045 kcal (2) G-P(sol) polarization free energy of solvation -72.536 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.836 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.372 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.328 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds