Wall clock time and date at job start Sat Apr 11 2020 06:11:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47267 * 2 1 4 4 H 1.08997 * 109.47624 * 299.58698 * 3 2 1 5 5 C 1.50707 * 109.47218 * 179.58535 * 3 2 1 6 6 O 1.21279 * 120.00381 * 262.53819 * 5 3 2 7 7 N 1.34775 * 119.99257 * 82.53908 * 5 3 2 8 8 C 1.46499 * 120.00645 * 6.45167 * 7 5 3 9 9 C 1.46509 * 119.99761 * 186.45254 * 7 5 3 10 10 C 1.53777 * 113.61556 * 215.44898 * 9 7 5 11 11 C 1.54047 * 86.98268 * 270.83576 * 10 9 7 12 12 N 1.46901 * 113.69631 * 220.00811 * 11 10 9 13 13 C 1.46895 * 111.00257 * 252.53529 * 12 11 10 14 14 C 1.50700 * 109.47325 * 179.97438 * 13 12 11 15 15 O 1.21297 * 120.00048 * 0.02562 * 14 13 12 16 16 N 1.34778 * 120.00523 * 180.02562 * 14 13 12 17 17 C 1.37087 * 120.00361 * 180.02562 * 16 14 13 18 18 H 1.08000 * 120.00181 * 359.97438 * 17 16 14 19 19 C 1.38959 * 120.00344 * 180.02562 * 17 16 14 20 20 N 1.31417 * 119.99668 * 359.97438 * 19 17 16 21 21 Si 1.86794 * 120.00438 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.47179 * 59.99317 * 21 19 17 23 23 H 1.48497 * 109.47340 * 179.97438 * 21 19 17 24 24 H 1.48500 * 109.46818 * 299.99716 * 21 19 17 25 25 C 1.53777 * 113.61479 * 117.83502 * 9 7 5 26 26 N 1.46899 * 109.46840 * 59.59031 * 3 2 1 27 27 C 1.46905 * 111.00125 * 55.51389 * 26 3 2 28 28 C 1.46903 * 110.99979 * 179.46355 * 26 3 2 29 29 H 1.09004 * 109.47018 * 54.76293 * 1 2 3 30 30 H 1.08991 * 109.47042 * 294.76268 * 1 2 3 31 31 H 1.08997 * 109.46767 * 174.75713 * 1 2 3 32 32 H 1.09001 * 109.47088 * 120.00175 * 2 1 3 33 33 H 1.09001 * 109.47416 * 239.99909 * 2 1 3 34 34 H 1.08997 * 109.46841 * 33.41690 * 8 7 5 35 35 H 1.08999 * 109.47022 * 153.41257 * 8 7 5 36 36 H 1.09001 * 109.47044 * 273.41669 * 8 7 5 37 37 H 1.09002 * 112.84725 * 346.64471 * 9 7 5 38 38 H 1.08993 * 113.61461 * 25.42789 * 10 9 7 39 39 H 1.08997 * 113.61094 * 156.33484 * 10 9 7 40 40 H 1.09004 * 113.61385 * 89.11871 * 11 10 9 41 41 H 1.00904 * 111.00197 * 128.58461 * 12 11 10 42 42 H 1.09002 * 109.47593 * 299.99914 * 13 12 11 43 43 H 1.09002 * 109.47178 * 59.99993 * 13 12 11 44 44 H 0.97005 * 119.99476 * 0.02562 * 16 14 13 45 45 H 0.97000 * 119.99957 * 180.02562 * 20 19 17 46 46 H 1.08995 * 113.61585 * 203.66776 * 25 9 7 47 47 H 1.08999 * 113.61389 * 334.57729 * 25 9 7 48 48 H 1.08998 * 109.47297 * 68.56692 * 27 26 3 49 49 H 1.09001 * 109.46792 * 188.56984 * 27 26 3 50 50 H 1.09001 * 109.46368 * 308.56429 * 27 26 3 51 51 H 1.08999 * 109.47087 * 62.71403 * 28 26 3 52 52 H 1.08999 * 109.47167 * 182.70796 * 28 26 3 53 53 H 1.08998 * 109.47310 * 302.71023 * 28 26 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6828 1.9542 -0.8936 5 6 3.5471 1.4425 0.0103 6 8 4.1464 1.5814 1.0554 7 7 4.2287 1.2881 -1.1421 8 6 3.5118 1.2622 -2.4195 9 6 5.6867 1.1462 -1.1174 10 6 6.3905 1.8099 -2.3128 11 6 6.2193 0.4699 -3.0532 12 7 7.3851 0.0891 -3.8618 13 6 7.1037 0.2408 -5.2955 14 6 8.3199 -0.1576 -6.0912 15 8 9.3225 -0.5316 -5.5201 16 7 8.2937 -0.0984 -7.4374 17 6 9.3999 -0.4613 -8.1612 18 1 10.2926 -0.7943 -7.6527 19 6 9.3731 -0.3997 -9.5492 20 7 8.2871 0.0060 -10.1680 21 14 10.8807 -0.8935 -10.5354 22 1 11.2197 -2.3099 -10.2456 23 1 10.5964 -0.7395 -11.9847 24 1 12.0244 -0.0240 -10.1598 25 6 6.1840 -0.2001 -1.6695 26 7 1.5423 2.1378 1.1945 27 6 1.9155 1.4154 2.4180 28 6 2.0235 3.5252 1.2348 29 1 -0.3633 0.5929 -0.8394 30 1 -0.3633 0.4304 0.9331 31 1 -0.3633 -1.0234 -0.0939 32 1 1.8933 -0.5139 0.8900 33 1 1.8934 -0.5138 -0.8900 34 1 2.6461 1.9220 -2.3637 35 1 4.1754 1.6000 -3.2154 36 1 3.1806 0.2452 -2.6296 37 1 6.1213 1.4101 -0.1533 38 1 5.8231 2.6295 -2.7535 39 1 7.4305 2.0708 -2.1171 40 1 5.2803 0.3905 -3.6009 41 1 7.6811 -0.8518 -3.6491 42 1 6.2640 -0.3976 -5.5706 43 1 6.8548 1.2803 -5.5090 44 1 7.4920 0.2011 -7.8942 45 1 8.2682 0.0487 -11.1369 46 1 7.1676 -0.4877 -1.2983 47 1 5.4499 -1.0020 -1.5913 48 1 2.9943 1.4762 2.5611 49 1 1.4096 1.8636 3.2731 50 1 1.6193 0.3703 2.3274 51 1 1.6342 4.0699 0.3747 52 1 1.6801 4.0023 2.1528 53 1 3.1131 3.5328 1.2070 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001508141938.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:30 Heat of formation + Delta-G solvation = -46.133914 kcal Electronic energy + Delta-G solvation = -30428.444574 eV Core-core repulsion = 26335.774550 eV Total energy + Delta-G solvation = -4092.670024 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.226 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -42.00804 -40.48718 -39.86494 -37.65396 -36.32047 -35.83564 -34.38040 -33.54083 -33.20372 -29.12461 -28.65157 -28.28131 -27.99749 -26.72699 -25.95833 -24.43464 -23.80362 -22.35328 -21.16683 -20.62985 -19.93097 -19.65196 -18.62021 -17.77575 -17.45253 -16.91461 -16.85708 -16.60465 -16.34688 -16.07185 -15.92760 -15.75607 -15.53610 -15.15879 -15.00515 -14.48297 -14.22657 -14.07363 -13.98676 -13.63355 -13.51755 -13.34694 -13.21656 -13.11447 -13.06225 -12.99684 -12.86436 -12.74732 -12.54326 -12.45145 -12.43266 -12.31047 -12.12248 -11.86803 -11.68910 -11.60456 -11.50102 -11.38369 -11.12598 -10.32318 -10.01331 -9.68991 -9.30157 -9.16918 -8.46542 -5.95035 1.39763 1.41960 1.45772 1.52569 1.89013 2.05894 2.29363 2.92201 2.95940 3.20870 3.38827 3.47968 3.58270 3.65876 3.81689 3.88697 3.99358 4.07884 4.18794 4.24428 4.29543 4.45784 4.48139 4.52940 4.56628 4.59160 4.60963 4.62644 4.70731 4.74942 4.80004 4.82122 4.87812 4.91541 4.96201 4.98509 5.01895 5.11271 5.18590 5.20051 5.26621 5.40979 5.53825 5.58178 5.88167 5.93445 5.95079 6.16440 6.34810 6.39762 6.60743 7.08994 7.12977 7.56844 8.12499 8.70444 Molecular weight = 340.23amu Principal moments of inertia in cm(-1) A = 0.026725 B = 0.001806 C = 0.001760 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1047.445706 B =15500.786435 C =15908.137142 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.110 4.110 3 C 0.068 3.932 4 H 0.125 0.875 5 C 0.487 3.513 6 O -0.575 6.575 7 N -0.591 5.591 8 C 0.054 3.946 9 C 0.120 3.880 10 C -0.129 4.129 11 C 0.058 3.942 12 N -0.673 5.673 13 C 0.066 3.934 14 C 0.436 3.564 15 O -0.626 6.626 16 N -0.572 5.572 17 C -0.335 4.335 18 H 0.077 0.923 19 C -0.012 4.012 20 N -0.919 5.919 21 Si 0.992 3.008 22 H -0.272 1.272 23 H -0.270 1.270 24 H -0.273 1.273 25 C -0.143 4.143 26 N -0.513 5.513 27 C 0.001 3.999 28 C 0.015 3.985 29 H 0.064 0.936 30 H 0.057 0.943 31 H 0.059 0.941 32 H 0.058 0.942 33 H 0.082 0.918 34 H 0.092 0.908 35 H 0.087 0.913 36 H 0.076 0.924 37 H 0.087 0.913 38 H 0.079 0.921 39 H 0.087 0.913 40 H 0.100 0.900 41 H 0.345 0.655 42 H 0.071 0.929 43 H 0.103 0.897 44 H 0.397 0.603 45 H 0.278 0.722 46 H 0.091 0.909 47 H 0.077 0.923 48 H 0.044 0.956 49 H 0.069 0.931 50 H 0.072 0.928 51 H 0.079 0.921 52 H 0.075 0.925 53 H 0.017 0.983 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.971 3.703 18.122 27.962 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.148 4.148 3 C -0.044 4.044 4 H 0.143 0.857 5 C 0.275 3.725 6 O -0.455 6.455 7 N -0.323 5.323 8 C -0.087 4.087 9 C 0.015 3.985 10 C -0.168 4.168 11 C -0.051 4.051 12 N -0.305 5.305 13 C -0.066 4.066 14 C 0.223 3.777 15 O -0.512 6.512 16 N -0.210 5.210 17 C -0.465 4.465 18 H 0.095 0.905 19 C -0.212 4.212 20 N -0.559 5.559 21 Si 0.815 3.185 22 H -0.197 1.197 23 H -0.194 1.194 24 H -0.199 1.199 25 C -0.182 4.182 26 N -0.235 5.235 27 C -0.146 4.146 28 C -0.133 4.133 29 H 0.083 0.917 30 H 0.076 0.924 31 H 0.078 0.922 32 H 0.076 0.924 33 H 0.100 0.900 34 H 0.111 0.889 35 H 0.106 0.894 36 H 0.094 0.906 37 H 0.105 0.895 38 H 0.098 0.902 39 H 0.106 0.894 40 H 0.117 0.883 41 H 0.165 0.835 42 H 0.088 0.912 43 H 0.121 0.879 44 H 0.231 0.769 45 H 0.087 0.913 46 H 0.109 0.891 47 H 0.096 0.904 48 H 0.063 0.937 49 H 0.088 0.912 50 H 0.091 0.909 51 H 0.098 0.902 52 H 0.094 0.906 53 H 0.036 0.964 Dipole moment (debyes) X Y Z Total from point charges -20.284 4.184 18.855 28.008 hybrid contribution 1.170 -0.759 -0.880 1.649 sum -19.114 3.424 17.975 26.460 Atomic orbital electron populations 1.21584 0.92931 1.01817 1.02848 1.21552 0.98372 0.92071 1.02816 1.22220 0.86643 0.98773 0.96801 0.85736 1.22599 0.92278 0.74745 0.82862 1.90603 1.71716 1.51194 1.31983 1.47844 1.05977 1.70806 1.07638 1.22371 0.98020 1.03725 0.84609 1.21656 0.80604 0.96949 0.99303 1.23434 1.01147 0.97203 0.95014 1.23509 0.92466 0.96721 0.92429 1.60179 1.34763 1.32478 1.03076 1.21595 0.93643 1.02916 0.88471 1.20965 0.90917 0.83127 0.82670 1.90496 1.36481 1.53529 1.70724 1.41922 1.15135 1.58802 1.05104 1.19614 0.94239 1.43195 0.89418 0.90465 1.26021 1.01190 0.96785 0.97238 1.69658 1.28761 1.47024 1.10488 0.85007 0.77604 0.78756 0.77086 1.19730 1.19414 1.19881 1.23545 1.02200 0.97029 0.95402 1.62578 1.56331 1.02566 1.01987 1.22741 1.00795 0.99220 0.91881 1.22500 0.97896 0.89271 1.03613 0.91718 0.92397 0.92168 0.92353 0.89987 0.88910 0.89410 0.90569 0.89522 0.90234 0.89442 0.88274 0.83525 0.91153 0.87862 0.76887 0.91273 0.89068 0.90449 0.93743 0.91229 0.90929 0.90186 0.90575 0.96446 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.25 9.67 71.98 0.70 -0.55 16 2 C -0.11 -1.26 4.94 30.59 0.15 -1.11 16 3 C 0.07 0.93 1.66 44.17 0.07 1.00 16 4 H 0.13 1.22 6.15 -2.39 -0.01 1.20 16 5 C 0.49 9.45 5.90 87.66 0.52 9.97 16 6 O -0.57 -15.58 11.73 -3.03 -0.04 -15.62 16 7 N -0.59 -9.79 3.08 -819.64 -2.52 -12.31 16 8 C 0.05 0.54 8.40 127.77 1.07 1.61 16 9 C 0.12 2.42 4.45 45.51 0.20 2.62 16 10 C -0.13 -2.65 7.11 31.21 0.22 -2.42 16 11 C 0.06 1.20 3.47 45.53 0.16 1.36 16 12 N -0.67 -19.95 6.19 -492.38 -3.05 -23.00 16 13 C 0.07 2.12 6.01 85.56 0.51 2.63 16 14 C 0.44 20.30 7.82 87.66 0.69 20.98 16 15 O -0.63 -34.48 15.78 -3.08 -0.05 -34.53 16 16 N -0.57 -28.84 5.29 -306.98 -1.62 -30.46 16 17 C -0.34 -18.89 9.68 84.04 0.81 -18.07 16 18 H 0.08 4.66 7.16 -2.91 -0.02 4.64 16 19 C -0.01 -0.66 5.50 84.93 0.47 -0.19 16 20 N -0.92 -48.78 13.05 21.67 0.28 -48.50 16 21 Si 0.99 42.59 29.55 68.60 2.03 44.61 16 22 H -0.27 -11.54 7.11 99.48 0.71 -10.84 16 23 H -0.27 -10.87 7.11 99.48 0.71 -10.16 16 24 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 25 C -0.14 -2.81 7.35 31.12 0.23 -2.58 16 26 N -0.51 -8.07 4.37 -927.71 -4.05 -12.12 16 27 C 0.00 0.02 8.81 127.69 1.13 1.15 16 28 C 0.02 0.24 9.29 127.69 1.19 1.43 16 29 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 30 H 0.06 0.66 7.73 -2.39 -0.02 0.64 16 31 H 0.06 0.48 8.14 -2.39 -0.02 0.47 16 32 H 0.06 0.83 6.18 -2.39 -0.01 0.82 16 33 H 0.08 0.77 7.57 -2.39 -0.02 0.75 16 34 H 0.09 0.56 6.16 -2.39 -0.01 0.54 16 35 H 0.09 0.90 4.69 -2.39 -0.01 0.89 16 36 H 0.08 0.57 7.76 -2.39 -0.02 0.55 16 37 H 0.09 2.14 7.23 -2.39 -0.02 2.12 16 38 H 0.08 1.46 7.29 -2.39 -0.02 1.44 16 39 H 0.09 2.11 8.14 -2.39 -0.02 2.09 16 40 H 0.10 1.65 5.32 -2.38 -0.01 1.64 16 41 H 0.35 10.96 8.25 -89.69 -0.74 10.22 16 42 H 0.07 1.90 8.13 -2.39 -0.02 1.88 16 43 H 0.10 2.97 8.14 -2.39 -0.02 2.96 16 44 H 0.40 18.80 7.90 -92.70 -0.73 18.07 16 45 H 0.28 13.84 8.31 -92.71 -0.77 13.07 16 46 H 0.09 1.98 8.14 -2.39 -0.02 1.96 16 47 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 48 H 0.04 1.03 5.40 -2.39 -0.01 1.02 16 49 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 50 H 0.07 1.15 5.77 -2.39 -0.01 1.13 16 51 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 52 H 0.08 1.08 8.12 -2.39 -0.02 1.06 16 53 H 0.02 0.36 6.09 -2.39 -0.01 0.34 16 Total: -1.00 -71.29 406.74 -1.44 -72.73 By element: Atomic # 1 Polarization: 41.91 SS G_CDS: -0.54 Total: 41.37 kcal Atomic # 6 Polarization: 9.71 SS G_CDS: 8.11 Total: 17.82 kcal Atomic # 7 Polarization: -115.43 SS G_CDS: -10.96 Total: -126.39 kcal Atomic # 8 Polarization: -50.07 SS G_CDS: -0.08 Total: -50.15 kcal Atomic # 14 Polarization: 42.59 SS G_CDS: 2.03 Total: 44.61 kcal Total: -71.29 -1.44 -72.73 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001508141938.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.601 kcal (2) G-P(sol) polarization free energy of solvation -71.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.692 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.441 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.735 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds