Wall clock time and date at job start Sat Apr 11 2020 06:11:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42900 * 114.00092 * 2 1 4 4 C 1.53004 * 109.47164 * 180.02562 * 3 2 1 5 5 N 1.46896 * 109.46951 * 64.56576 * 4 3 2 6 6 C 1.46900 * 110.99964 * 71.81356 * 5 4 3 7 7 C 1.50697 * 109.47426 * 66.87472 * 6 5 4 8 8 H 1.08000 * 119.99544 * 4.64421 * 7 6 5 9 9 C 1.37873 * 119.99896 * 184.63869 * 7 6 5 10 10 N 1.31506 * 120.00577 * 0.02562 * 9 7 6 11 11 Si 1.86809 * 119.99587 * 180.02562 * 9 7 6 12 12 H 1.48496 * 109.47289 * 0.02562 * 11 9 7 13 13 H 1.48498 * 109.46839 * 120.00176 * 11 9 7 14 14 H 1.48504 * 109.46938 * 239.99955 * 11 9 7 15 15 C 1.38587 * 110.99740 * 195.76696 * 5 4 3 16 16 N 1.31216 * 126.47342 * 342.24648 * 15 5 4 17 17 N 1.28525 * 109.85982 * 180.02562 * 16 15 5 18 18 C 1.30296 * 110.05348 * 359.72645 * 17 16 15 19 19 C 1.50696 * 126.34649 * 180.30909 * 18 17 16 20 20 N 1.36451 * 126.47013 * 162.29742 * 15 5 4 21 21 C 1.46491 * 127.14122 * 359.96160 * 20 15 5 22 22 C 1.52999 * 109.47323 * 274.61490 * 21 20 15 23 23 C 1.53004 * 109.47403 * 64.84712 * 22 21 20 24 24 C 1.53005 * 109.47086 * 304.85022 * 22 21 20 25 25 C 1.53002 * 109.47454 * 184.84878 * 22 21 20 26 26 O 1.42898 * 109.46920 * 179.97438 * 25 22 21 27 27 C 1.42906 * 113.99924 * 180.02562 * 26 25 22 28 28 H 1.09000 * 109.47031 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.46741 * 299.99410 * 1 2 3 30 30 H 1.08997 * 109.47533 * 59.99913 * 1 2 3 31 31 H 1.08997 * 109.46866 * 60.00088 * 3 2 1 32 32 H 1.08995 * 109.47139 * 300.00267 * 3 2 1 33 33 H 1.08996 * 109.46745 * 304.56340 * 4 3 2 34 34 H 1.08996 * 109.46680 * 184.56625 * 4 3 2 35 35 H 1.09004 * 109.46994 * 186.87303 * 6 5 4 36 36 H 1.08997 * 109.46921 * 306.87149 * 6 5 4 37 37 H 0.96997 * 120.00642 * 179.97438 * 10 9 7 38 38 H 1.08997 * 109.47269 * 270.15436 * 19 18 17 39 39 H 1.09004 * 109.47349 * 30.15377 * 19 18 17 40 40 H 1.09003 * 109.47298 * 150.15168 * 19 18 17 41 41 H 1.08994 * 109.47548 * 154.61407 * 21 20 15 42 42 H 1.09007 * 109.47373 * 34.61369 * 21 20 15 43 43 H 1.08994 * 109.47211 * 180.02562 * 23 22 21 44 44 H 1.09000 * 109.46451 * 300.00613 * 23 22 21 45 45 H 1.08997 * 109.46801 * 60.00180 * 23 22 21 46 46 H 1.09007 * 109.46774 * 295.62420 * 24 22 21 47 47 H 1.09002 * 109.47436 * 55.61816 * 24 22 21 48 48 H 1.08996 * 109.47428 * 175.62174 * 24 22 21 49 49 H 1.08997 * 109.47129 * 300.00051 * 25 22 21 50 50 H 1.09001 * 109.46967 * 60.00047 * 25 22 21 51 51 H 1.08992 * 109.47386 * 180.02562 * 27 26 25 52 52 H 1.09000 * 109.46912 * 300.00261 * 27 26 25 53 53 H 1.09002 * 109.47037 * 59.99785 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 7 3.9761 0.5532 -1.2517 6 6 3.8195 1.4708 -2.3881 7 6 4.7737 2.6272 -2.2353 8 1 5.4825 2.6383 -1.4205 9 6 4.7419 3.6708 -3.1358 10 7 3.8785 3.6575 -4.1276 11 14 5.9253 5.1038 -2.9467 12 1 6.7886 4.8796 -1.7595 13 1 6.7728 5.2094 -4.1616 14 1 5.1555 6.3613 -2.7693 15 6 5.2846 0.1082 -1.1493 16 7 6.1675 0.4812 -0.2532 17 7 7.2794 -0.1311 -0.4546 18 6 7.1711 -0.9288 -1.4791 19 6 8.2495 -1.8247 -2.0315 20 7 5.8983 -0.8000 -1.9620 21 6 5.3130 -1.4974 -3.1097 22 6 4.5796 -2.7499 -2.6256 23 6 3.3942 -2.3402 -1.7493 24 6 5.5391 -3.6200 -1.8112 25 6 4.0721 -3.5421 -3.8322 26 8 3.3877 -4.7122 -3.3800 27 6 2.8715 -5.5275 -4.4341 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5137 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 1.6886 1.8463 0.8900 32 1 1.6886 1.8464 -0.8899 33 1 3.8519 0.5746 0.8454 34 1 3.9785 2.1771 0.0812 35 1 4.0364 0.9409 -3.3156 36 1 2.7962 1.8452 -2.4144 37 1 3.8559 4.3919 -4.7609 38 1 8.8214 -1.2830 -2.7848 39 1 8.9136 -2.1342 -1.2243 40 1 7.7938 -2.7051 -2.4848 41 1 6.1040 -1.7845 -3.8024 42 1 4.6089 -0.8369 -3.6158 43 1 2.8720 -3.2324 -1.4042 44 1 3.7559 -1.7758 -0.8898 45 1 2.7107 -1.7203 -2.3295 46 1 6.3429 -3.9758 -2.4558 47 1 5.9606 -3.0314 -0.9962 48 1 4.9976 -4.4725 -1.4014 49 1 3.3886 -2.9223 -4.4124 50 1 4.9166 -3.8341 -4.4564 51 1 2.3664 -6.3945 -4.0087 52 1 2.1629 -4.9491 -5.0269 53 1 3.6913 -5.8602 -5.0707 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001519162439.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:42 Heat of formation + Delta-G solvation = -22.623360 kcal Electronic energy + Delta-G solvation = -33138.263014 eV Core-core repulsion = 29046.612484 eV Total energy + Delta-G solvation = -4091.650530 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.226 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -43.84361 -39.69718 -39.39123 -37.84417 -37.41233 -34.72940 -34.18005 -32.73363 -30.75252 -29.33044 -28.26375 -28.20001 -27.91442 -27.45534 -26.92378 -26.02237 -24.88478 -23.35255 -21.83027 -21.18335 -20.01122 -18.83169 -17.94962 -17.71521 -17.47241 -17.33284 -16.78878 -16.70354 -16.57991 -16.10617 -15.89705 -15.73200 -15.37194 -15.19129 -14.69250 -14.58494 -14.51596 -14.13892 -13.89034 -13.67536 -13.45243 -13.34129 -13.18935 -13.12472 -12.82431 -12.73667 -12.64790 -12.61097 -12.48681 -12.40064 -12.33987 -12.17929 -12.11078 -11.93702 -11.75476 -11.63286 -11.51666 -11.18822 -10.78154 -10.66394 -10.52696 -10.46810 -10.24062 -9.02150 -8.25506 -6.39816 1.04168 1.27659 1.31811 1.44730 1.50828 2.06198 2.32607 2.83530 2.97519 3.03290 3.13100 3.57890 3.65690 3.77487 3.96632 4.05118 4.15229 4.21303 4.26931 4.32332 4.39537 4.47554 4.52311 4.55109 4.59002 4.61994 4.64730 4.66318 4.71575 4.74211 4.79399 4.86855 4.89930 4.92140 4.93854 5.00309 5.06495 5.07928 5.12537 5.18924 5.23154 5.24865 5.29322 5.42559 5.60787 5.66794 5.77575 5.96074 6.03279 6.29497 6.38568 6.57410 6.76779 7.30713 8.00781 8.78163 Molecular weight = 340.23amu Principal moments of inertia in cm(-1) A = 0.008904 B = 0.004839 C = 0.004054 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3143.726577 B = 5784.872115 C = 6904.735088 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.395 6.395 3 C 0.079 3.921 4 C 0.084 3.916 5 N -0.439 5.439 6 C 0.211 3.789 7 C -0.557 4.557 8 H 0.050 0.950 9 C 0.031 3.969 10 N -0.913 5.913 11 Si 0.942 3.058 12 H -0.284 1.284 13 H -0.277 1.277 14 H -0.271 1.271 15 C 0.398 3.602 16 N -0.375 5.375 17 N -0.337 5.337 18 C 0.170 3.830 19 C -0.061 4.061 20 N -0.466 5.466 21 C 0.119 3.881 22 C -0.070 4.070 23 C -0.108 4.108 24 C -0.128 4.128 25 C 0.081 3.919 26 O -0.403 6.403 27 C 0.027 3.973 28 H 0.095 0.905 29 H 0.051 0.949 30 H 0.038 0.962 31 H 0.073 0.927 32 H 0.044 0.956 33 H 0.068 0.932 34 H 0.054 0.946 35 H 0.016 0.984 36 H 0.037 0.963 37 H 0.267 0.733 38 H 0.093 0.907 39 H 0.101 0.899 40 H 0.102 0.898 41 H 0.121 0.879 42 H 0.081 0.919 43 H 0.051 0.949 44 H 0.040 0.960 45 H 0.043 0.957 46 H 0.080 0.920 47 H 0.033 0.967 48 H 0.061 0.939 49 H 0.050 0.950 50 H 0.075 0.925 51 H 0.094 0.906 52 H 0.043 0.957 53 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.131 -17.302 -1.781 17.524 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.315 6.315 3 C 0.002 3.998 4 C -0.044 4.044 5 N -0.163 5.163 6 C 0.086 3.914 7 C -0.596 4.596 8 H 0.069 0.931 9 C -0.170 4.170 10 N -0.552 5.552 11 Si 0.768 3.232 12 H -0.210 1.210 13 H -0.203 1.203 14 H -0.196 1.196 15 C 0.041 3.959 16 N -0.218 5.218 17 N -0.176 5.176 18 C -0.098 4.098 19 C -0.120 4.120 20 N -0.160 5.160 21 C -0.003 4.003 22 C -0.071 4.071 23 C -0.166 4.166 24 C -0.185 4.185 25 C 0.004 3.996 26 O -0.322 6.322 27 C -0.069 4.069 28 H 0.113 0.887 29 H 0.069 0.931 30 H 0.056 0.944 31 H 0.091 0.909 32 H 0.062 0.938 33 H 0.087 0.913 34 H 0.072 0.928 35 H 0.034 0.966 36 H 0.054 0.946 37 H 0.076 0.924 38 H 0.111 0.889 39 H 0.120 0.880 40 H 0.121 0.879 41 H 0.139 0.861 42 H 0.099 0.901 43 H 0.070 0.930 44 H 0.059 0.941 45 H 0.062 0.938 46 H 0.099 0.901 47 H 0.052 0.948 48 H 0.080 0.920 49 H 0.069 0.931 50 H 0.093 0.907 51 H 0.113 0.887 52 H 0.062 0.938 53 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -1.830 -17.089 -0.661 17.199 hybrid contribution -0.016 1.725 -1.190 2.095 sum -1.846 -15.364 -1.851 15.585 Atomic orbital electron populations 1.22850 0.80350 1.03352 1.00289 1.87939 1.20574 1.27531 1.95418 1.22447 0.91764 0.84989 1.00571 1.21824 0.94215 0.98492 0.89884 1.59372 1.10797 1.39101 1.06992 1.19585 0.96832 0.88174 0.86814 1.21977 1.19277 1.06083 1.12306 0.93149 1.25470 0.96671 1.00044 0.94772 1.69992 1.36520 1.33292 1.15429 0.85750 0.79463 0.80248 0.77702 1.20953 1.20277 1.19585 1.22479 0.91636 0.91515 0.90297 1.74471 0.97191 1.23473 1.26684 1.73724 1.17259 1.09946 1.16693 1.25413 0.86634 1.02383 0.95409 1.20473 0.92839 0.96384 1.02284 1.46024 1.11136 1.32871 1.25969 1.21978 0.99390 0.93496 0.85476 1.20842 0.96385 0.93234 0.96595 1.21518 0.96409 0.99591 0.99070 1.21793 0.98620 0.98768 0.99305 1.22361 0.96396 0.86557 0.94313 1.87849 1.74460 1.36158 1.33757 1.22897 0.98434 0.94798 0.90819 0.88661 0.93068 0.94377 0.90918 0.93810 0.91340 0.92800 0.96588 0.94551 0.92383 0.88872 0.88037 0.87936 0.86072 0.90068 0.92993 0.94131 0.93781 0.90146 0.94755 0.91964 0.93130 0.90734 0.88739 0.93835 0.92738 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.69 11.01 113.37 1.25 1.94 16 2 O -0.40 -13.37 10.64 -148.98 -1.59 -14.96 16 3 C 0.08 2.79 6.08 71.98 0.44 3.23 16 4 C 0.08 3.48 4.72 86.31 0.41 3.89 16 5 N -0.44 -19.04 3.13 -710.37 -2.22 -21.26 16 6 C 0.21 10.44 4.96 85.56 0.42 10.86 16 7 C -0.56 -30.74 7.53 25.60 0.19 -30.55 16 8 H 0.05 2.99 6.41 -2.91 -0.02 2.97 16 9 C 0.03 1.73 5.46 84.65 0.46 2.19 16 10 N -0.91 -51.39 13.29 21.44 0.28 -51.11 16 11 Si 0.94 45.00 29.54 68.60 2.03 47.03 16 12 H -0.28 -14.18 7.11 99.48 0.71 -13.47 16 13 H -0.28 -12.86 7.11 99.48 0.71 -12.16 16 14 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 15 C 0.40 17.56 4.22 260.11 1.10 18.65 16 16 N -0.37 -18.13 10.83 -58.00 -0.63 -18.76 16 17 N -0.34 -14.89 12.18 -49.54 -0.60 -15.49 16 18 C 0.17 5.98 6.54 137.64 0.90 6.88 16 19 C -0.06 -1.32 9.79 71.23 0.70 -0.62 16 20 N -0.47 -16.97 2.18 -514.87 -1.12 -18.09 16 21 C 0.12 3.41 4.91 86.38 0.42 3.83 16 22 C -0.07 -1.75 0.68 -52.18 -0.04 -1.79 16 23 C -0.11 -3.42 7.41 71.98 0.53 -2.89 16 24 C -0.13 -2.94 7.00 71.98 0.50 -2.44 16 25 C 0.08 1.64 4.81 71.98 0.35 1.99 16 26 O -0.40 -8.66 9.44 -148.98 -1.41 -10.07 16 27 C 0.03 0.39 11.01 113.37 1.25 1.63 16 28 H 0.09 2.02 8.14 -2.39 -0.02 2.00 16 29 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 30 H 0.04 0.94 8.14 -2.39 -0.02 0.92 16 31 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 32 H 0.04 1.67 6.49 -2.39 -0.02 1.66 16 33 H 0.07 2.87 7.81 -2.39 -0.02 2.85 16 34 H 0.05 2.50 6.78 -2.39 -0.02 2.48 16 35 H 0.02 0.84 6.26 -2.39 -0.01 0.82 16 36 H 0.04 1.90 6.40 -2.39 -0.02 1.89 16 37 H 0.27 14.21 8.31 -92.71 -0.77 13.43 16 38 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 39 H 0.10 1.96 8.14 -2.38 -0.02 1.94 16 40 H 0.10 1.61 5.48 -2.39 -0.01 1.60 16 41 H 0.12 2.57 7.66 -2.39 -0.02 2.56 16 42 H 0.08 2.71 6.19 -2.38 -0.01 2.70 16 43 H 0.05 1.59 7.68 -2.39 -0.02 1.57 16 44 H 0.04 1.52 5.73 -2.39 -0.01 1.50 16 45 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 46 H 0.08 1.37 6.84 -2.38 -0.02 1.35 16 47 H 0.03 0.95 6.13 -2.39 -0.01 0.94 16 48 H 0.06 1.48 7.82 -2.39 -0.02 1.46 16 49 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 50 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 51 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 52 H 0.04 0.60 8.14 -2.39 -0.02 0.58 16 53 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 Total: -1.00 -72.13 408.31 4.52 -67.61 By element: Atomic # 1 Polarization: 17.39 SS G_CDS: 0.89 Total: 18.28 kcal Atomic # 6 Polarization: 7.93 SS G_CDS: 8.89 Total: 16.81 kcal Atomic # 7 Polarization: -120.41 SS G_CDS: -4.29 Total: -124.70 kcal Atomic # 8 Polarization: -22.04 SS G_CDS: -2.99 Total: -25.03 kcal Atomic # 14 Polarization: 45.00 SS G_CDS: 2.03 Total: 47.03 kcal Total: -72.13 4.52 -67.61 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001519162439.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.987 kcal (2) G-P(sol) polarization free energy of solvation -72.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.145 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.610 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds