Wall clock time and date at job start Sat Apr 11 2020 06:12:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.34782 * 119.99538 * 2 1 4 4 O 1.21582 * 120.00444 * 0.02562 * 3 2 1 5 5 N 1.34780 * 119.99894 * 179.97438 * 3 2 1 6 6 C 1.46498 * 119.99911 * 180.02562 * 5 3 2 7 7 C 1.53008 * 109.46838 * 180.02562 * 6 5 3 8 8 C 1.50694 * 109.46901 * 179.97438 * 7 6 5 9 9 O 1.21286 * 120.00413 * 0.02562 * 8 7 6 10 10 N 1.34780 * 119.99975 * 179.97438 * 8 7 6 11 11 C 1.46498 * 119.99911 * 180.02562 * 10 8 7 12 12 H 1.08995 * 110.21357 * 36.93251 * 11 10 8 13 13 C 1.52533 * 110.24837 * 275.00053 * 11 10 8 14 14 C 1.46242 * 114.27225 * 151.62377 * 13 11 10 15 15 N 1.50161 * 107.53496 * 58.40937 * 14 13 11 16 16 C 1.36943 * 120.53652 * 109.56764 * 15 14 13 17 17 H 1.08004 * 120.00144 * 156.67771 * 16 15 14 18 18 C 1.38814 * 119.99903 * 336.67314 * 16 15 14 19 19 N 1.31614 * 120.00106 * 340.42991 * 18 16 15 20 20 Si 1.86800 * 119.99834 * 160.42879 * 18 16 15 21 21 H 1.48496 * 109.47097 * 59.99795 * 20 18 16 22 22 H 1.48501 * 109.47011 * 179.97438 * 20 18 16 23 23 H 1.48501 * 109.47043 * 300.00032 * 20 18 16 24 24 C 1.43435 * 118.92780 * 289.58755 * 15 14 13 25 25 C 1.54898 * 116.07989 * 91.56602 * 24 15 14 26 26 C 1.53003 * 109.35740 * 78.85108 * 25 24 15 27 27 C 1.53005 * 109.35762 * 198.43815 * 25 24 15 28 28 C 1.50130 * 110.25041 * 159.02235 * 11 10 8 29 29 H 1.09000 * 109.47620 * 59.99997 * 1 2 3 30 30 H 1.09006 * 109.46857 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47542 * 299.99396 * 1 2 3 32 32 H 0.96993 * 120.00614 * 180.02562 * 2 1 3 33 33 H 0.97000 * 119.99862 * 0.02562 * 5 3 2 34 34 H 1.08995 * 109.47058 * 60.00782 * 6 5 3 35 35 H 1.08992 * 109.47024 * 299.99766 * 6 5 3 36 36 H 1.08999 * 109.46694 * 59.99969 * 7 6 5 37 37 H 1.08997 * 109.46886 * 300.00104 * 7 6 5 38 38 H 0.97000 * 119.99862 * 0.02562 * 10 8 7 39 39 H 1.08995 * 108.52226 * 272.86322 * 13 11 10 40 40 H 1.08998 * 108.52426 * 30.38395 * 13 11 10 41 41 H 1.09003 * 109.84168 * 177.92027 * 14 13 11 42 42 H 1.09002 * 109.84650 * 298.82693 * 14 13 11 43 43 H 0.97002 * 120.00219 * 180.02562 * 19 18 16 44 44 H 1.09002 * 108.15803 * 213.28960 * 24 15 14 45 45 H 1.08997 * 108.15370 * 330.05732 * 24 15 14 46 46 H 1.08997 * 109.47003 * 59.99942 * 26 25 24 47 47 H 1.08995 * 109.46957 * 180.02562 * 26 25 24 48 48 H 1.08999 * 109.46765 * 299.99556 * 26 25 24 49 49 H 1.09001 * 109.47131 * 59.99819 * 27 25 24 50 50 H 1.08992 * 109.46830 * 180.02562 * 27 25 24 51 51 H 1.08999 * 109.46804 * 299.99999 * 27 25 24 52 52 H 1.09004 * 109.20299 * 337.00215 * 28 11 10 53 53 H 1.09001 * 109.20678 * 96.30911 * 28 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1387 1.1673 0.0000 4 8 1.5308 2.2202 0.0005 5 7 3.4865 1.1674 0.0005 6 6 4.2189 2.4361 0.0011 7 6 5.7233 2.1566 0.0010 8 6 6.4766 3.4617 0.0009 9 8 5.8702 4.5121 0.0014 10 7 7.8245 3.4618 0.0013 11 6 8.5568 4.7306 0.0018 12 1 8.0368 5.4653 0.6164 13 6 8.7132 5.2504 -1.4236 14 6 8.8088 6.7062 -1.5255 15 7 9.9890 7.1405 -0.7050 16 6 11.1223 7.6126 -1.3117 17 1 11.7976 8.2567 -0.7680 18 6 11.4032 7.2633 -2.6254 19 7 10.8285 6.2083 -3.1631 20 14 12.5968 8.2905 -3.6302 21 1 13.9258 8.2941 -2.9679 22 1 12.7242 7.7110 -4.9915 23 1 12.0895 9.6826 -3.7298 24 6 9.9103 7.0526 0.7245 25 6 10.4196 5.7324 1.3546 26 6 11.9484 5.7546 1.4123 27 6 9.8632 5.6000 2.7738 28 6 9.9555 4.5230 0.5065 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5137 0.8900 32 1 1.9500 -0.8399 -0.0004 33 1 3.9716 0.3274 0.0005 34 1 3.9553 3.0074 0.8911 35 1 3.9560 3.0078 -0.8888 36 1 5.9865 1.5854 -0.8893 37 1 5.9865 1.5846 0.8907 38 1 8.3095 2.6218 0.0013 39 1 9.6137 4.8132 -1.8548 40 1 7.8563 4.9179 -2.0094 41 1 8.9550 6.9954 -2.5662 42 1 7.8988 7.1648 -1.1386 43 1 11.0251 5.9640 -4.0810 44 1 10.4864 7.8755 1.1477 45 1 8.8685 7.1851 1.0161 46 1 12.2768 6.5984 2.0191 47 1 12.3088 4.8261 1.8550 48 1 12.3485 5.8549 0.4034 49 1 8.7738 5.5900 2.7375 50 1 10.2209 4.6717 3.2190 51 1 10.1989 6.4444 3.3758 52 1 9.9854 3.6223 1.1196 53 1 10.6284 4.4007 -0.3422 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001566130074.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:12:25 Heat of formation + Delta-G solvation = -72.794956 kcal Electronic energy + Delta-G solvation = -31079.883213 eV Core-core repulsion = 26986.057079 eV Total energy + Delta-G solvation = -4093.826134 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.226 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -41.31261 -40.89850 -39.69255 -36.48042 -36.16483 -35.84944 -35.56350 -33.36226 -32.59373 -31.49076 -29.08086 -28.02298 -27.51720 -27.29189 -25.27880 -24.56163 -23.06358 -22.07183 -21.64682 -21.32610 -19.79815 -19.30172 -18.57240 -18.03516 -17.19526 -17.10467 -17.02564 -16.76740 -16.23397 -15.86940 -15.55129 -15.32122 -15.23885 -15.18838 -15.07915 -14.76571 -14.29115 -14.15630 -13.86644 -13.75839 -13.48148 -13.23959 -13.03590 -13.01682 -12.92358 -12.84865 -12.62960 -12.51652 -12.41881 -12.36478 -12.23814 -11.91463 -11.64995 -11.53467 -11.48367 -11.39086 -11.11441 -10.98354 -10.74181 -10.45871 -10.43918 -9.85783 -9.78263 -8.61289 -7.78083 -5.17369 1.48274 1.52026 1.56643 1.63121 1.73554 2.12555 2.39971 2.56687 3.34611 3.39704 3.58872 3.69966 3.99664 4.02305 4.10150 4.13235 4.14060 4.46542 4.47884 4.50885 4.56441 4.58035 4.67294 4.77155 4.81512 4.88802 4.91744 4.92749 4.96114 5.00236 5.02017 5.10431 5.14740 5.23598 5.29400 5.35193 5.38355 5.41538 5.49300 5.49844 5.56540 5.66746 5.70374 5.78226 5.84008 6.01911 6.10606 6.45744 6.69975 7.13134 7.20508 7.40103 7.58801 7.93756 8.46736 9.26419 Molecular weight = 340.23amu Principal moments of inertia in cm(-1) A = 0.017529 B = 0.002315 C = 0.002146 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1596.952505 B =12091.536096 C =13042.231723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.102 3.898 2 N -0.735 5.735 3 C 0.690 3.310 4 O -0.645 6.645 5 N -0.727 5.727 6 C 0.160 3.840 7 C -0.132 4.132 8 C 0.507 3.493 9 O -0.590 6.590 10 N -0.707 5.707 11 C 0.162 3.838 12 H 0.064 0.936 13 C -0.116 4.116 14 C 0.173 3.827 15 N -0.595 5.595 16 C -0.246 4.246 17 H 0.062 0.938 18 C -0.042 4.042 19 N -0.915 5.915 20 Si 0.952 3.048 21 H -0.279 1.279 22 H -0.297 1.297 23 H -0.290 1.290 24 C 0.163 3.837 25 C -0.086 4.086 26 C -0.120 4.120 27 C -0.127 4.127 28 C -0.090 4.090 29 H 0.042 0.958 30 H 0.117 0.883 31 H 0.044 0.956 32 H 0.418 0.582 33 H 0.418 0.582 34 H 0.049 0.951 35 H 0.042 0.958 36 H 0.131 0.869 37 H 0.140 0.860 38 H 0.414 0.586 39 H 0.080 0.920 40 H 0.016 0.984 41 H 0.058 0.942 42 H 0.001 0.999 43 H 0.246 0.754 44 H 0.028 0.972 45 H 0.025 0.975 46 H 0.049 0.951 47 H 0.059 0.941 48 H 0.034 0.966 49 H 0.044 0.956 50 H 0.069 0.931 51 H 0.057 0.943 52 H 0.077 0.923 53 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.793 -20.506 10.036 24.842 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.042 4.042 2 N -0.391 5.391 3 C 0.390 3.610 4 O -0.527 6.527 5 N -0.384 5.384 6 C 0.034 3.966 7 C -0.172 4.172 8 C 0.295 3.705 9 O -0.470 6.470 10 N -0.359 5.359 11 C 0.058 3.942 12 H 0.082 0.918 13 C -0.155 4.155 14 C 0.049 3.951 15 N -0.316 5.316 16 C -0.376 4.376 17 H 0.079 0.921 18 C -0.238 4.238 19 N -0.561 5.561 20 Si 0.782 3.218 21 H -0.205 1.205 22 H -0.223 1.223 23 H -0.217 1.217 24 C 0.035 3.965 25 C -0.090 4.090 26 C -0.178 4.178 27 C -0.184 4.184 28 C -0.128 4.128 29 H 0.061 0.939 30 H 0.135 0.865 31 H 0.063 0.937 32 H 0.254 0.746 33 H 0.256 0.744 34 H 0.067 0.933 35 H 0.061 0.939 36 H 0.149 0.851 37 H 0.158 0.842 38 H 0.251 0.749 39 H 0.098 0.902 40 H 0.034 0.966 41 H 0.076 0.924 42 H 0.019 0.981 43 H 0.055 0.945 44 H 0.046 0.954 45 H 0.043 0.957 46 H 0.068 0.932 47 H 0.078 0.922 48 H 0.053 0.947 49 H 0.063 0.937 50 H 0.088 0.912 51 H 0.076 0.924 52 H 0.096 0.904 53 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -10.746 -18.865 9.864 23.847 hybrid contribution 1.216 0.042 -1.175 1.692 sum -9.529 -18.823 8.689 22.817 Atomic orbital electron populations 1.21535 0.77499 1.04167 1.01004 1.44783 1.08199 1.06671 1.79476 1.16310 0.82378 0.84545 0.77798 1.90933 1.69117 1.32797 1.59834 1.44762 1.03968 1.10027 1.79660 1.20598 0.90047 0.84594 1.01361 1.21719 0.92322 0.94805 1.08354 1.21082 0.82650 0.91780 0.75036 1.90749 1.69002 1.35897 1.51379 1.46050 1.05976 1.09655 1.74196 1.20036 0.92476 0.85400 0.96330 0.91832 1.21090 1.00551 0.98366 0.95520 1.19907 0.85893 0.93209 0.96127 1.44260 1.12183 1.74406 1.00790 1.19246 1.00565 1.21605 0.96158 0.92057 1.25434 1.00797 0.97641 0.99899 1.70086 1.47580 1.24668 1.13801 0.85583 0.79540 0.78694 0.77996 1.20526 1.22340 1.21664 1.20617 0.97000 0.94822 0.84097 1.21846 0.95921 0.96261 0.94989 1.21640 0.94709 1.00766 1.00663 1.21756 0.99941 1.02151 0.94574 1.21608 0.93847 0.98045 0.99309 0.93903 0.86486 0.93722 0.74573 0.74417 0.93259 0.93948 0.85115 0.84231 0.74878 0.90187 0.96565 0.92364 0.98064 0.94506 0.95401 0.95657 0.93237 0.92222 0.94697 0.93729 0.91224 0.92442 0.90440 0.93198 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.15 10.70 127.77 1.37 2.52 16 2 N -0.73 -9.11 5.72 -500.20 -2.86 -11.97 16 3 C 0.69 15.31 8.57 179.05 1.53 16.85 16 4 O -0.65 -22.30 16.34 -3.98 -0.06 -22.37 16 5 N -0.73 -11.47 5.56 -478.54 -2.66 -14.13 16 6 C 0.16 3.57 4.96 86.38 0.43 4.00 16 7 C -0.13 -2.01 5.81 29.85 0.17 -1.84 16 8 C 0.51 14.00 7.68 87.65 0.67 14.67 16 9 O -0.59 -23.25 15.70 -3.05 -0.05 -23.29 16 10 N -0.71 -18.52 5.01 -447.70 -2.24 -20.77 16 11 C 0.16 5.73 2.10 43.91 0.09 5.82 16 12 H 0.06 2.57 5.29 -2.39 -0.01 2.55 16 13 C -0.12 -5.09 4.73 28.36 0.13 -4.96 16 14 C 0.17 8.63 5.24 83.58 0.44 9.06 16 15 N -0.60 -29.19 2.60 -707.84 -1.84 -31.03 16 16 C -0.25 -13.04 8.94 84.03 0.75 -12.29 16 17 H 0.06 3.26 7.89 -2.91 -0.02 3.23 16 18 C -0.04 -2.25 4.91 84.86 0.42 -1.84 16 19 N -0.92 -50.60 9.42 21.65 0.20 -50.39 16 20 Si 0.95 44.50 29.60 68.60 2.03 46.53 16 21 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 22 H -0.30 -14.01 7.11 99.48 0.71 -13.30 16 23 H -0.29 -13.62 7.11 99.48 0.71 -12.91 16 24 C 0.16 6.74 4.01 87.59 0.35 7.09 16 25 C -0.09 -2.90 0.76 -50.90 -0.04 -2.93 16 26 C -0.12 -4.01 8.29 71.98 0.60 -3.41 16 27 C -0.13 -3.36 8.20 71.98 0.59 -2.77 16 28 C -0.09 -2.97 4.15 30.30 0.13 -2.84 16 29 H 0.04 0.63 8.14 -2.39 -0.02 0.61 16 30 H 0.12 0.31 8.14 -2.38 -0.02 0.29 16 31 H 0.04 0.64 8.14 -2.39 -0.02 0.62 16 32 H 0.42 1.61 8.84 -92.71 -0.82 0.79 16 33 H 0.42 2.53 8.49 -92.71 -0.79 1.75 16 34 H 0.05 1.38 8.10 -2.39 -0.02 1.36 16 35 H 0.04 1.25 8.10 -2.39 -0.02 1.23 16 36 H 0.13 1.26 8.14 -2.39 -0.02 1.24 16 37 H 0.14 1.04 8.14 -2.39 -0.02 1.02 16 38 H 0.41 7.51 8.45 -92.71 -0.78 6.72 16 39 H 0.08 3.92 5.29 -2.39 -0.01 3.91 16 40 H 0.02 0.72 7.90 -2.39 -0.02 0.70 16 41 H 0.06 3.26 6.05 -2.39 -0.01 3.25 16 42 H 0.00 0.06 8.13 -2.39 -0.02 0.04 16 43 H 0.25 13.45 8.31 -92.71 -0.77 12.68 16 44 H 0.03 1.16 7.84 -2.39 -0.02 1.15 16 45 H 0.03 1.05 6.66 -2.39 -0.02 1.03 16 46 H 0.05 1.55 8.13 -2.39 -0.02 1.53 16 47 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 48 H 0.03 1.42 7.45 -2.39 -0.02 1.40 16 49 H 0.04 1.23 7.57 -2.39 -0.02 1.21 16 50 H 0.07 1.53 8.12 -2.39 -0.02 1.51 16 51 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 52 H 0.08 1.99 7.63 -2.38 -0.02 1.97 16 53 H 0.05 2.01 6.66 -2.39 -0.02 1.99 16 Total: -1.00 -80.33 408.22 -1.31 -81.64 By element: Atomic # 1 Polarization: 20.09 SS G_CDS: -1.46 Total: 18.64 kcal Atomic # 6 Polarization: 19.51 SS G_CDS: 7.64 Total: 27.14 kcal Atomic # 7 Polarization: -118.89 SS G_CDS: -9.40 Total: -128.29 kcal Atomic # 8 Polarization: -45.55 SS G_CDS: -0.11 Total: -45.66 kcal Atomic # 14 Polarization: 44.50 SS G_CDS: 2.03 Total: 46.53 kcal Total: -80.33 -1.31 -81.64 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001566130074.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.843 kcal (2) G-P(sol) polarization free energy of solvation -80.330 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.487 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.638 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds