Wall clock time and date at job start Sat Apr 11 2020 06:13:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52990 * 109.47483 * 2 1 4 4 C 1.52997 * 109.46977 * 239.99755 * 2 1 3 5 5 C 1.53000 * 109.47021 * 120.00285 * 2 1 3 6 6 H 1.09000 * 109.46928 * 294.12976 * 5 2 1 7 7 N 1.46499 * 109.47184 * 174.13737 * 5 2 1 8 8 C 1.34779 * 120.00393 * 84.99448 * 7 5 2 9 9 N 1.34769 * 120.00118 * 180.02562 * 8 7 5 10 10 O 1.21582 * 119.99796 * 0.02562 * 8 7 5 11 11 C 1.50695 * 109.47353 * 54.13364 * 5 2 1 12 12 O 1.21283 * 119.99874 * 89.50570 * 11 5 2 13 13 N 1.34780 * 120.00164 * 269.50383 * 11 5 2 14 14 C 1.46500 * 120.00098 * 185.34985 * 13 11 5 15 15 C 1.52994 * 109.47207 * 180.02562 * 14 13 11 16 16 H 1.09003 * 109.49863 * 54.92868 * 15 14 13 17 17 C 1.53037 * 109.49971 * 175.00118 * 15 14 13 18 18 C 1.53044 * 109.53854 * 181.31484 * 17 15 14 19 19 C 1.53191 * 109.31351 * 298.63490 * 18 17 15 20 20 N 1.46928 * 108.77411 * 54.63133 * 19 18 17 21 21 C 1.36934 * 120.62607 * 126.37110 * 20 19 18 22 22 H 1.08002 * 120.00139 * 326.10779 * 21 20 19 23 23 C 1.38817 * 120.00120 * 146.10388 * 21 20 19 24 24 N 1.31616 * 119.99657 * 343.46371 * 23 21 20 25 25 Si 1.86799 * 119.99943 * 163.46189 * 23 21 20 26 26 H 1.48504 * 109.47093 * 60.00476 * 25 23 21 27 27 H 1.48503 * 109.46665 * 179.97438 * 25 23 21 28 28 H 1.48494 * 109.47251 * 299.99827 * 25 23 21 29 29 C 1.46918 * 118.74291 * 306.64306 * 20 19 18 30 30 H 1.09006 * 109.46849 * 297.19731 * 1 2 3 31 31 H 1.08998 * 109.46943 * 57.18695 * 1 2 3 32 32 H 1.08993 * 109.47254 * 177.19458 * 1 2 3 33 33 H 1.09004 * 109.47421 * 180.02562 * 3 2 1 34 34 H 1.09001 * 109.47397 * 300.00141 * 3 2 1 35 35 H 1.09001 * 109.47517 * 60.00033 * 3 2 1 36 36 H 1.09003 * 109.47280 * 300.00574 * 4 2 1 37 37 H 1.09001 * 109.47172 * 59.99928 * 4 2 1 38 38 H 1.08999 * 109.47690 * 180.02562 * 4 2 1 39 39 H 0.97004 * 119.99887 * 264.99751 * 7 5 2 40 40 H 0.97004 * 120.00162 * 0.02562 * 9 8 7 41 41 H 0.97003 * 120.00022 * 180.02562 * 9 8 7 42 42 H 0.96993 * 119.99686 * 5.35705 * 13 11 5 43 43 H 1.09001 * 109.46875 * 60.00171 * 14 13 11 44 44 H 1.09002 * 109.46693 * 300.00249 * 14 13 11 45 45 H 1.09000 * 109.46207 * 61.29453 * 17 15 14 46 46 H 1.08998 * 109.44842 * 301.32418 * 17 15 14 47 47 H 1.09000 * 109.49925 * 178.68130 * 18 17 15 48 48 H 1.09000 * 109.52301 * 58.60114 * 18 17 15 49 49 H 1.09001 * 109.58485 * 294.84505 * 19 18 17 50 50 H 1.09000 * 109.70591 * 174.49542 * 19 18 17 51 51 H 0.96997 * 119.99794 * 180.02562 * 24 23 21 52 52 H 1.08998 * 109.58877 * 173.14498 * 29 20 19 53 53 H 1.08997 * 109.58851 * 293.57576 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 2.0400 -0.7213 1.2492 6 1 1.7650 -0.1504 2.1361 7 7 3.4981 -0.8447 1.1808 8 6 4.2808 0.1678 1.6035 9 7 5.6222 0.0545 1.5401 10 8 3.7766 1.1836 2.0421 11 6 1.4226 -2.0940 1.3239 12 8 1.9722 -3.0358 0.7929 13 7 0.2598 -2.2751 1.9809 14 6 -0.2808 -3.6256 2.1546 15 6 -1.5990 -3.5518 2.9277 16 1 -2.2818 -2.8717 2.4184 17 6 -2.2266 -4.9455 3.0015 18 6 -3.5613 -4.8670 3.7462 19 6 -3.3161 -4.3709 5.1747 20 7 -2.5830 -3.0990 5.1142 21 6 -3.0576 -1.9890 5.7604 22 1 -4.1220 -1.8255 5.8423 23 6 -2.1705 -1.0737 6.3104 24 7 -0.9134 -1.4111 6.5052 25 14 -2.7612 0.6368 6.7738 26 1 -3.8408 0.5299 7.7878 27 1 -1.6291 1.4156 7.3371 28 1 -3.2831 1.3245 5.5656 29 6 -1.3344 -3.0393 4.3423 30 1 -0.3633 0.4697 0.9141 31 1 -0.3633 0.5569 -0.8637 32 1 -0.3633 -1.0264 -0.0503 33 1 3.1301 1.4424 -0.0005 34 1 1.6768 1.9563 -0.8900 35 1 1.6768 1.9563 0.8900 36 1 1.6765 -1.7490 -1.2492 37 1 1.6766 -0.2075 -2.1392 38 1 3.1299 -0.7218 -1.2491 39 1 3.9004 -1.6552 0.8312 40 1 6.0245 -0.7558 1.1898 41 1 6.1855 0.7831 1.8447 42 1 -0.2192 -1.5113 2.3386 43 1 0.4330 -4.2339 2.7101 44 1 -0.4577 -4.0745 1.1772 45 1 -1.5538 -5.6192 3.5322 46 1 -2.3955 -5.3215 1.9924 47 1 -4.0190 -5.8558 3.7780 48 1 -4.2264 -4.1748 3.2299 49 1 -2.7263 -5.1071 5.7209 50 1 -4.2699 -4.2194 5.6800 51 1 -0.2936 -0.7717 6.8898 52 1 -0.9822 -2.0088 4.2963 53 1 -0.5797 -3.6646 4.8192 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001566878402.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:13:01 Heat of formation + Delta-G solvation = -91.341673 kcal Electronic energy + Delta-G solvation = -32179.342665 eV Core-core repulsion = 28084.712285 eV Total energy + Delta-G solvation = -4094.630380 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.226 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -41.98827 -40.44387 -39.37993 -37.82467 -36.20672 -35.06549 -34.78150 -33.89298 -32.59164 -31.62350 -28.94521 -28.17288 -27.88401 -27.21786 -26.29927 -23.89801 -22.56458 -22.28336 -21.81598 -20.71206 -19.97121 -19.59055 -18.72578 -18.51264 -17.47127 -17.17145 -17.01563 -16.75564 -16.23687 -15.86863 -15.77678 -15.38396 -15.27957 -15.11568 -15.05291 -14.60962 -14.50834 -14.35216 -14.04430 -13.85913 -13.74797 -13.48841 -13.11129 -12.96458 -12.90303 -12.85261 -12.59214 -12.54064 -12.31631 -12.26028 -12.03929 -11.92326 -11.78324 -11.74870 -11.53839 -11.41478 -11.28129 -11.06880 -10.87844 -10.62328 -10.55268 -10.11696 -9.96462 -8.58404 -7.87631 -5.38770 1.34891 1.46403 1.48545 1.55160 1.77460 2.14191 2.35015 2.50426 3.25994 3.47444 3.59326 3.64498 3.70291 3.84876 4.01242 4.06836 4.09562 4.16341 4.31092 4.37679 4.48308 4.55144 4.65844 4.73146 4.78077 4.82245 4.87976 4.89821 4.90431 4.99306 5.00104 5.04400 5.10972 5.17663 5.20853 5.24968 5.30720 5.35751 5.40024 5.40331 5.47654 5.48082 5.52744 5.67876 5.76465 5.83055 6.03487 6.41616 6.42427 7.01401 7.07054 7.17018 7.63561 7.86470 8.41805 9.16661 Molecular weight = 340.23amu Principal moments of inertia in cm(-1) A = 0.010413 B = 0.003754 C = 0.003179 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2688.206732 B = 7455.930643 C = 8806.183728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.067 4.067 3 C -0.121 4.121 4 C -0.132 4.132 5 C 0.157 3.843 6 H 0.087 0.913 7 N -0.719 5.719 8 C 0.702 3.298 9 N -0.847 5.847 10 O -0.627 6.627 11 C 0.522 3.478 12 O -0.560 6.560 13 N -0.714 5.714 14 C 0.139 3.861 15 C -0.111 4.111 16 H 0.073 0.927 17 C -0.097 4.097 18 C -0.121 4.121 19 C 0.136 3.864 20 N -0.609 5.609 21 C -0.269 4.269 22 H 0.061 0.939 23 C -0.036 4.036 24 N -0.928 5.928 25 Si 0.956 3.044 26 H -0.276 1.276 27 H -0.298 1.298 28 H -0.273 1.273 29 C 0.194 3.806 30 H 0.055 0.945 31 H 0.080 0.920 32 H 0.057 0.943 33 H 0.050 0.950 34 H 0.065 0.935 35 H 0.042 0.958 36 H 0.050 0.950 37 H 0.069 0.931 38 H 0.058 0.942 39 H 0.412 0.588 40 H 0.413 0.587 41 H 0.422 0.578 42 H 0.406 0.594 43 H 0.052 0.948 44 H 0.081 0.919 45 H 0.054 0.946 46 H 0.083 0.917 47 H 0.082 0.918 48 H 0.057 0.943 49 H 0.007 0.993 50 H 0.049 0.951 51 H 0.249 0.751 52 H 0.048 0.952 53 H -0.013 1.013 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.806 -1.326 -17.068 18.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.069 4.069 3 C -0.178 4.178 4 C -0.189 4.189 5 C 0.047 3.953 6 H 0.105 0.895 7 N -0.377 5.377 8 C 0.400 3.600 9 N -0.416 5.416 10 O -0.507 6.507 11 C 0.307 3.693 12 O -0.439 6.439 13 N -0.364 5.364 14 C 0.015 3.985 15 C -0.132 4.132 16 H 0.091 0.909 17 C -0.135 4.135 18 C -0.160 4.160 19 C 0.010 3.990 20 N -0.332 5.332 21 C -0.399 4.399 22 H 0.079 0.921 23 C -0.233 4.233 24 N -0.572 5.572 25 Si 0.784 3.216 26 H -0.202 1.202 27 H -0.224 1.224 28 H -0.199 1.199 29 C 0.068 3.932 30 H 0.075 0.925 31 H 0.099 0.901 32 H 0.076 0.924 33 H 0.069 0.931 34 H 0.084 0.916 35 H 0.061 0.939 36 H 0.069 0.931 37 H 0.088 0.912 38 H 0.077 0.923 39 H 0.249 0.751 40 H 0.243 0.757 41 H 0.256 0.744 42 H 0.242 0.758 43 H 0.071 0.929 44 H 0.099 0.901 45 H 0.073 0.927 46 H 0.101 0.899 47 H 0.101 0.899 48 H 0.076 0.924 49 H 0.025 0.975 50 H 0.068 0.932 51 H 0.058 0.942 52 H 0.066 0.934 53 H 0.005 0.995 Dipole moment (debyes) X Y Z Total from point charges 7.753 -1.171 -16.979 18.702 hybrid contribution 0.381 0.859 1.090 1.439 sum 8.134 -0.313 -15.889 17.853 Atomic orbital electron populations 1.22014 0.93141 1.02474 1.03227 1.20850 0.96383 0.96045 0.93598 1.21769 1.00946 0.93843 1.01257 1.21781 1.01280 0.99789 0.96090 1.20680 0.80806 0.92952 1.00849 0.89487 1.44619 1.04713 1.19646 1.68702 1.16035 0.82768 0.82944 0.78218 1.42746 1.03868 1.24179 1.70833 1.90980 1.74429 1.31245 1.54095 1.20516 0.80926 0.90356 0.77465 1.90636 1.62786 1.43607 1.46906 1.46127 1.23407 1.10697 1.56201 1.21326 0.94374 0.82801 0.99996 1.21829 0.95439 0.99066 0.96842 0.90901 1.21347 0.96492 0.94776 1.00931 1.21866 0.97157 1.01084 0.95921 1.21123 0.95026 0.87105 0.95711 1.44220 1.25599 1.06682 1.56739 1.19362 0.91611 0.99606 1.29350 0.92132 1.25823 0.96405 1.02823 0.98200 1.70170 1.04820 1.34779 1.47439 0.85524 0.76964 0.80673 0.78407 1.20193 1.22439 1.19869 1.20385 0.86616 0.98266 0.87916 0.92547 0.90142 0.92383 0.93075 0.91630 0.93876 0.93066 0.91168 0.92318 0.75109 0.75691 0.74431 0.75808 0.92914 0.90057 0.92732 0.89875 0.89942 0.92384 0.97470 0.93229 0.94239 0.93399 0.99477 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.25 7.60 71.98 0.55 -2.70 16 2 C -0.07 -1.52 0.62 -52.19 -0.03 -1.55 16 3 C -0.12 -2.89 7.09 71.98 0.51 -2.38 16 4 C -0.13 -2.64 8.01 71.98 0.58 -2.07 16 5 C 0.16 4.21 1.94 44.24 0.09 4.30 16 6 H 0.09 2.76 7.58 -2.39 -0.02 2.74 16 7 N -0.72 -16.89 4.01 -461.43 -1.85 -18.74 16 8 C 0.70 17.40 7.44 179.06 1.33 18.74 16 9 N -0.85 -12.60 8.88 -184.76 -1.64 -14.25 16 10 O -0.63 -20.91 14.32 -3.97 -0.06 -20.97 16 11 C 0.52 15.13 5.28 87.65 0.46 15.59 16 12 O -0.56 -17.69 15.19 -3.04 -0.05 -17.74 16 13 N -0.71 -21.23 4.43 -463.07 -2.05 -23.29 16 14 C 0.14 4.14 5.07 86.38 0.44 4.58 16 15 C -0.11 -3.69 2.36 -10.86 -0.03 -3.72 16 16 H 0.07 2.43 8.14 -2.39 -0.02 2.41 16 17 C -0.10 -2.81 5.17 30.62 0.16 -2.65 16 18 C -0.12 -3.72 6.08 30.67 0.19 -3.53 16 19 C 0.14 5.50 6.52 86.36 0.56 6.07 16 20 N -0.61 -29.74 2.96 -699.92 -2.07 -31.81 16 21 C -0.27 -14.53 9.51 84.04 0.80 -13.73 16 22 H 0.06 3.22 7.88 -2.91 -0.02 3.20 16 23 C -0.04 -1.96 4.88 84.86 0.41 -1.55 16 24 N -0.93 -54.40 11.64 21.65 0.25 -54.15 16 25 Si 0.96 44.43 29.58 68.60 2.03 46.46 16 26 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 27 H -0.30 -14.15 7.11 99.48 0.71 -13.45 16 28 H -0.27 -12.17 7.11 99.48 0.71 -11.47 16 29 C 0.19 8.75 4.34 86.22 0.37 9.13 16 30 H 0.06 1.29 8.14 -2.38 -0.02 1.27 16 31 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 32 H 0.06 1.29 6.68 -2.39 -0.02 1.27 16 33 H 0.05 1.31 5.63 -2.38 -0.01 1.29 16 34 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 35 H 0.04 1.20 7.89 -2.39 -0.02 1.18 16 36 H 0.05 1.15 6.79 -2.39 -0.02 1.14 16 37 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 38 H 0.06 1.12 7.45 -2.39 -0.02 1.10 16 39 H 0.41 8.43 7.87 -92.71 -0.73 7.70 16 40 H 0.41 3.56 8.84 -92.71 -0.82 2.74 16 41 H 0.42 5.31 8.93 -92.71 -0.83 4.48 16 42 H 0.41 12.46 7.40 -92.71 -0.69 11.78 16 43 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 44 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16 45 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 46 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 47 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 48 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 49 H 0.01 0.31 8.14 -2.39 -0.02 0.29 16 50 H 0.05 2.00 7.93 -2.39 -0.02 1.98 16 51 H 0.25 14.36 8.31 -92.71 -0.77 13.59 16 52 H 0.05 2.39 5.72 -2.39 -0.01 2.38 16 53 H -0.01 -0.65 8.14 -2.39 -0.02 -0.67 16 Total: -1.00 -70.57 405.01 -1.17 -71.74 By element: Atomic # 1 Polarization: 40.33 SS G_CDS: -2.12 Total: 38.21 kcal Atomic # 6 Polarization: 18.13 SS G_CDS: 6.39 Total: 24.53 kcal Atomic # 7 Polarization: -134.87 SS G_CDS: -7.36 Total: -142.23 kcal Atomic # 8 Polarization: -38.60 SS G_CDS: -0.10 Total: -38.71 kcal Atomic # 14 Polarization: 44.43 SS G_CDS: 2.03 Total: 46.46 kcal Total: -70.57 -1.17 -71.74 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001566878402.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.599 kcal (2) G-P(sol) polarization free energy of solvation -70.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.173 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.742 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.342 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds