Wall clock time and date at job start Sat Apr 11 2020 06:13:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52994 * 109.47118 * 2 1 4 4 N 1.46507 * 109.47338 * 180.02562 * 3 2 1 5 5 C 1.34777 * 119.99769 * 270.00577 * 4 3 2 6 6 O 1.21280 * 119.99837 * 179.97438 * 5 4 3 7 7 C 1.50691 * 120.00250 * 359.97438 * 5 4 3 8 8 C 1.52996 * 109.47383 * 180.02562 * 7 5 4 9 9 C 1.52997 * 109.47568 * 180.02562 * 8 7 5 10 10 C 1.52999 * 109.47472 * 180.02562 * 9 8 7 11 11 N 1.46500 * 109.47594 * 179.97438 * 10 9 8 12 12 C 1.34770 * 120.00385 * 179.97438 * 11 10 9 13 13 N 1.34778 * 120.00410 * 180.02562 * 12 11 10 14 14 O 1.21587 * 119.99825 * 359.97438 * 12 11 10 15 15 C 1.46494 * 119.99983 * 89.99791 * 4 3 2 16 16 H 1.09008 * 110.88436 * 2.43162 * 15 4 3 17 17 C 1.55154 * 111.03692 * 126.33321 * 15 4 3 18 18 C 1.54325 * 102.94303 * 153.59078 * 17 15 4 19 19 N 1.47290 * 107.30599 * 337.81911 * 18 17 15 20 20 C 1.36938 * 125.79079 * 178.92205 * 19 18 17 21 21 H 1.08005 * 119.99558 * 180.02562 * 20 19 18 22 22 C 1.38811 * 120.00146 * 0.02562 * 20 19 18 23 23 N 1.31620 * 120.00086 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 119.99779 * 180.02562 * 22 20 19 25 25 H 1.48498 * 109.47268 * 359.97438 * 24 22 20 26 26 H 1.48502 * 109.47204 * 119.99715 * 24 22 20 27 27 H 1.48508 * 109.46889 * 239.99519 * 24 22 20 28 28 C 1.47425 * 108.55742 * 358.92448 * 19 18 17 29 29 H 1.09006 * 109.46687 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.46895 * 299.99642 * 1 2 3 31 31 H 1.08994 * 109.47340 * 59.99949 * 1 2 3 32 32 H 1.08997 * 109.46934 * 239.99575 * 2 1 3 33 33 H 1.09006 * 109.47123 * 120.00362 * 2 1 3 34 34 H 1.09002 * 109.47437 * 60.00425 * 3 2 1 35 35 H 1.08997 * 109.47563 * 300.00215 * 3 2 1 36 36 H 1.09001 * 109.47821 * 300.00807 * 7 5 4 37 37 H 1.09003 * 109.47115 * 60.00634 * 7 5 4 38 38 H 1.08997 * 109.47581 * 300.00449 * 8 7 5 39 39 H 1.09004 * 109.47205 * 60.00193 * 8 7 5 40 40 H 1.09007 * 109.47216 * 299.99982 * 9 8 7 41 41 H 1.08994 * 109.47449 * 60.00034 * 9 8 7 42 42 H 1.09005 * 109.47300 * 300.00190 * 10 9 8 43 43 H 1.09004 * 109.47553 * 59.99636 * 10 9 8 44 44 H 0.97001 * 119.99821 * 0.02562 * 11 10 9 45 45 H 0.97001 * 119.99296 * 359.97438 * 13 12 11 46 46 H 0.96996 * 120.00420 * 180.02562 * 13 12 11 47 47 H 1.09002 * 110.72290 * 271.95765 * 17 15 4 48 48 H 1.08997 * 110.72022 * 35.22537 * 17 15 4 49 49 H 1.09004 * 109.88239 * 97.22707 * 18 17 15 50 50 H 1.08995 * 109.88239 * 218.23629 * 18 17 15 51 51 H 0.96999 * 120.00175 * 180.02562 * 23 22 20 52 52 H 1.09002 * 110.36696 * 265.26054 * 28 19 18 53 53 H 1.08995 * 110.36608 * 143.04891 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5051 1.4425 -0.0006 5 6 4.1794 1.4422 1.1663 6 8 5.3922 1.4418 1.1658 7 6 3.4265 1.4425 2.4717 8 6 4.4212 1.4427 3.6342 9 6 3.6568 1.4423 4.9595 10 6 4.6515 1.4432 6.1221 11 7 3.9196 1.4435 7.3911 12 6 4.5939 1.4437 8.5580 13 7 3.9206 1.4434 9.7255 14 8 5.8098 1.4433 8.5575 15 6 4.2370 1.4427 -1.2696 16 1 3.5497 1.4860 -2.1146 17 6 5.2585 2.6093 -1.3233 18 6 6.3329 2.0835 -2.2983 19 7 6.2319 0.6141 -2.3106 20 6 6.9968 -0.2349 -3.0651 21 1 6.8423 -1.3020 -3.0010 22 6 7.9707 0.2758 -3.9122 23 7 8.1585 1.5761 -3.9907 24 14 9.0136 -0.8824 -4.9419 25 1 8.6075 -2.2853 -4.6733 26 1 8.8177 -0.5770 -6.3819 27 1 10.4452 -0.7057 -4.5887 28 6 5.1681 0.2090 -1.3738 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 1.8933 -0.5139 -0.8899 33 1 1.8934 -0.5139 0.8900 34 1 1.6768 1.9563 0.8900 35 1 1.6767 1.9563 -0.8899 36 1 2.8000 2.3326 2.5298 37 1 2.7996 0.5526 2.5297 38 1 5.0479 0.5529 3.5764 39 1 5.0478 2.3328 3.5761 40 1 3.0298 2.3321 5.0177 41 1 3.0305 0.5522 5.0175 42 1 5.2789 0.5537 6.0642 43 1 5.2775 2.3337 6.0640 44 1 2.9496 1.4427 7.3916 45 1 2.9506 1.4434 9.7259 46 1 4.4059 1.4440 10.5653 47 1 4.7915 3.5131 -1.7148 48 1 5.6878 2.7916 -0.3381 49 1 6.1495 2.4756 -3.2987 50 1 7.3229 2.3863 -1.9574 51 1 8.8388 1.9331 -4.5829 52 1 5.5922 -0.0296 -0.3984 53 1 4.6208 -0.6470 -1.7684 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001567685371.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:13:47 Heat of formation + Delta-G solvation = -85.913522 kcal Electronic energy + Delta-G solvation = -30203.120944 eV Core-core repulsion = 26108.725947 eV Total energy + Delta-G solvation = -4094.394997 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.226 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -41.37393 -40.80173 -38.63123 -37.08915 -36.93965 -35.01779 -34.60777 -33.97469 -33.21921 -31.15261 -30.19670 -28.84643 -26.91500 -26.53307 -25.03474 -22.95762 -22.38449 -22.22677 -22.00127 -21.67464 -19.72298 -19.15745 -18.88631 -18.20337 -17.83395 -17.15066 -17.08209 -16.69467 -16.38385 -15.87381 -15.72634 -15.54500 -15.47039 -15.34633 -15.07248 -14.51869 -14.46371 -14.25206 -14.06758 -13.68862 -13.62526 -13.30044 -12.97046 -12.89480 -12.81585 -12.68406 -12.60071 -12.57205 -12.25090 -12.06585 -12.02443 -11.99350 -11.91937 -11.83377 -11.66889 -11.54007 -11.49547 -11.34711 -10.74950 -10.73732 -10.35549 -9.95566 -9.54742 -8.88609 -7.86861 -5.23078 1.41800 1.44860 1.54943 1.78826 1.93912 2.10531 2.17854 2.48700 3.30458 3.56097 3.70553 3.74918 3.84531 3.92821 4.04066 4.05412 4.10188 4.25575 4.26534 4.35679 4.40916 4.49188 4.56175 4.65024 4.70106 4.74514 4.76145 4.81823 4.85764 4.92455 4.96955 5.01907 5.05762 5.09545 5.13487 5.31754 5.35868 5.36540 5.40008 5.44737 5.52859 5.56391 5.64270 5.69643 5.82051 5.93525 6.05366 6.16829 6.61238 7.06699 7.15399 7.39896 7.67916 7.73955 8.40570 9.24086 Molecular weight = 340.23amu Principal moments of inertia in cm(-1) A = 0.011044 B = 0.002252 C = 0.001973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2534.645912 B =12432.393945 C =14186.491616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.143 4.143 3 C 0.105 3.895 4 N -0.602 5.602 5 C 0.496 3.504 6 O -0.577 6.577 7 C -0.123 4.123 8 C -0.103 4.103 9 C -0.108 4.108 10 C 0.134 3.866 11 N -0.728 5.728 12 C 0.693 3.307 13 N -0.847 5.847 14 O -0.655 6.655 15 C 0.153 3.847 16 H 0.107 0.893 17 C -0.142 4.142 18 C 0.195 3.805 19 N -0.624 5.624 20 C -0.242 4.242 21 H 0.080 0.920 22 C -0.071 4.071 23 N -0.953 5.953 24 Si 0.984 3.016 25 H -0.265 1.265 26 H -0.286 1.286 27 H -0.294 1.294 28 C 0.130 3.870 29 H 0.054 0.946 30 H 0.076 0.924 31 H 0.057 0.943 32 H 0.043 0.957 33 H 0.065 0.935 34 H 0.114 0.886 35 H 0.087 0.913 36 H 0.127 0.873 37 H 0.120 0.880 38 H 0.046 0.954 39 H 0.051 0.949 40 H 0.097 0.903 41 H 0.094 0.906 42 H 0.044 0.956 43 H 0.047 0.953 44 H 0.417 0.583 45 H 0.416 0.584 46 H 0.419 0.581 47 H 0.080 0.920 48 H 0.068 0.932 49 H 0.017 0.983 50 H -0.007 1.007 51 H 0.247 0.753 52 H 0.017 0.983 53 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.533 1.314 22.441 34.775 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.181 4.181 3 C -0.017 4.017 4 N -0.334 5.334 5 C 0.286 3.714 6 O -0.456 6.456 7 C -0.163 4.163 8 C -0.142 4.142 9 C -0.146 4.146 10 C 0.009 3.991 11 N -0.386 5.386 12 C 0.390 3.610 13 N -0.416 5.416 14 O -0.538 6.538 15 C 0.047 3.953 16 H 0.125 0.875 17 C -0.181 4.181 18 C 0.070 3.930 19 N -0.350 5.350 20 C -0.371 4.371 21 H 0.098 0.902 22 C -0.264 4.264 23 N -0.602 5.602 24 Si 0.811 3.189 25 H -0.189 1.189 26 H -0.212 1.212 27 H -0.221 1.221 28 C 0.003 3.997 29 H 0.073 0.927 30 H 0.095 0.905 31 H 0.076 0.924 32 H 0.062 0.938 33 H 0.084 0.916 34 H 0.132 0.868 35 H 0.105 0.895 36 H 0.145 0.855 37 H 0.138 0.862 38 H 0.065 0.935 39 H 0.070 0.930 40 H 0.115 0.885 41 H 0.112 0.888 42 H 0.063 0.937 43 H 0.065 0.935 44 H 0.254 0.746 45 H 0.247 0.753 46 H 0.252 0.748 47 H 0.099 0.901 48 H 0.087 0.913 49 H 0.035 0.965 50 H 0.011 0.989 51 H 0.056 0.944 52 H 0.035 0.965 53 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -24.792 1.314 22.123 33.253 hybrid contribution 1.015 -0.519 -0.643 1.309 sum -23.777 0.795 21.480 32.052 Atomic orbital electron populations 1.21662 0.93238 1.02264 1.02932 1.21958 0.97493 0.96678 1.01995 1.22022 0.76547 0.97707 1.05385 1.48064 1.07937 1.72939 1.04438 1.21654 0.87900 0.75005 0.86846 1.90754 1.16699 1.50224 1.87937 1.21748 0.98896 1.06866 0.88755 1.21184 0.97602 1.02079 0.93291 1.21643 0.97335 1.05078 0.90547 1.21158 0.95016 1.00833 0.82051 1.44876 1.10551 1.79320 1.03820 1.16341 0.84933 0.77411 0.82302 1.42769 1.11543 1.81083 1.06186 1.90964 1.14714 1.60572 1.87539 1.21952 0.92681 0.94307 0.86333 0.87543 1.23062 0.96915 0.97970 1.00177 1.20795 0.94152 0.83102 0.94984 1.44718 1.39893 1.02736 1.47700 1.19493 1.11914 0.89572 1.16125 0.90189 1.25745 1.00953 0.97829 1.01827 1.70218 1.36321 1.11702 1.41951 0.84933 0.77744 0.78263 0.77913 1.18918 1.21227 1.22114 1.21873 0.89427 0.95923 0.92439 0.92656 0.90544 0.92429 0.93819 0.91596 0.86782 0.89455 0.85550 0.86240 0.93505 0.93038 0.88488 0.88785 0.93705 0.93490 0.74592 0.75292 0.74849 0.90140 0.91334 0.96473 0.98910 0.94369 0.96493 0.94550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.28 9.91 71.98 0.71 -0.56 16 2 C -0.14 -2.00 6.26 30.59 0.19 -1.81 16 3 C 0.10 1.52 5.20 86.38 0.45 1.97 16 4 N -0.60 -15.56 2.56 -790.15 -2.02 -17.59 16 5 C 0.50 13.96 6.95 87.65 0.61 14.56 16 6 O -0.58 -23.60 12.02 -3.03 -0.04 -23.63 16 7 C -0.12 -1.85 4.25 29.84 0.13 -1.72 16 8 C -0.10 -1.85 4.50 30.59 0.14 -1.71 16 9 C -0.11 -1.03 5.33 30.59 0.16 -0.87 16 10 C 0.13 2.21 5.67 86.38 0.49 2.70 16 11 N -0.73 -8.73 5.56 -478.53 -2.66 -11.39 16 12 C 0.69 12.64 8.84 179.06 1.58 14.22 16 13 N -0.85 -6.52 8.88 -184.75 -1.64 -8.16 16 14 O -0.66 -20.31 17.18 -3.99 -0.07 -20.37 16 15 C 0.15 5.46 3.55 46.38 0.16 5.62 16 16 H 0.11 3.45 7.87 -2.38 -0.02 3.43 16 17 C -0.14 -5.98 6.28 31.78 0.20 -5.78 16 18 C 0.20 10.77 5.38 86.68 0.47 11.24 16 19 N -0.62 -35.56 3.40 -691.30 -2.35 -37.91 16 20 C -0.24 -14.73 10.28 84.03 0.86 -13.87 16 21 H 0.08 4.66 7.83 -2.91 -0.02 4.64 16 22 C -0.07 -4.33 5.49 84.86 0.47 -3.86 16 23 N -0.95 -61.23 10.33 21.65 0.22 -61.01 16 24 Si 0.98 48.58 29.55 68.60 2.03 50.60 16 25 H -0.26 -12.27 7.11 99.48 0.71 -11.56 16 26 H -0.29 -13.76 7.11 99.48 0.71 -13.05 16 27 H -0.29 -14.58 7.11 99.48 0.71 -13.87 16 28 C 0.13 5.99 6.62 86.85 0.57 6.56 16 29 H 0.05 0.52 8.14 -2.38 -0.02 0.50 16 30 H 0.08 0.37 8.14 -2.39 -0.02 0.36 16 31 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 32 H 0.04 0.85 8.14 -2.39 -0.02 0.83 16 33 H 0.07 0.90 7.22 -2.38 -0.02 0.89 16 34 H 0.11 0.85 6.44 -2.39 -0.02 0.83 16 35 H 0.09 1.17 7.94 -2.39 -0.02 1.15 16 36 H 0.13 1.03 7.40 -2.39 -0.02 1.01 16 37 H 0.12 1.16 7.19 -2.39 -0.02 1.15 16 38 H 0.05 1.11 8.10 -2.39 -0.02 1.09 16 39 H 0.05 1.17 8.10 -2.39 -0.02 1.15 16 40 H 0.10 0.47 8.14 -2.38 -0.02 0.45 16 41 H 0.09 0.51 8.14 -2.39 -0.02 0.49 16 42 H 0.04 0.96 8.14 -2.38 -0.02 0.94 16 43 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 44 H 0.42 1.35 8.49 -92.71 -0.79 0.57 16 45 H 0.42 -0.15 8.84 -92.71 -0.82 -0.97 16 46 H 0.42 2.87 8.93 -92.71 -0.83 2.04 16 47 H 0.08 2.90 8.14 -2.39 -0.02 2.89 16 48 H 0.07 3.10 5.71 -2.39 -0.01 3.09 16 49 H 0.02 1.01 7.39 -2.38 -0.02 1.00 16 50 H -0.01 -0.47 7.51 -2.39 -0.02 -0.49 16 51 H 0.25 15.28 8.31 -92.71 -0.77 14.51 16 52 H 0.02 0.87 6.08 -2.39 -0.01 0.86 16 53 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 Total: -1.00 -94.98 416.11 -0.84 -95.82 By element: Atomic # 1 Polarization: 8.47 SS G_CDS: -1.51 Total: 6.96 kcal Atomic # 6 Polarization: 19.49 SS G_CDS: 7.20 Total: 26.69 kcal Atomic # 7 Polarization: -127.60 SS G_CDS: -8.45 Total: -136.06 kcal Atomic # 8 Polarization: -43.90 SS G_CDS: -0.10 Total: -44.01 kcal Atomic # 14 Polarization: 48.58 SS G_CDS: 2.03 Total: 50.60 kcal Total: -94.98 -0.84 -95.82 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567685371.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.905 kcal (2) G-P(sol) polarization free energy of solvation -94.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -95.819 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds