Wall clock time and date at job start Sat Apr 11 2020 06:14:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86794 * 119.99910 * 2 1 4 4 H 1.48490 * 109.47437 * 269.99718 * 3 2 1 5 5 H 1.48502 * 109.47391 * 30.00055 * 3 2 1 6 6 H 1.48508 * 109.47122 * 149.99735 * 3 2 1 7 7 C 1.38817 * 119.99857 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99783 * 180.02562 * 7 2 1 9 9 N 1.36932 * 120.00042 * 0.02562 * 7 2 1 10 10 C 1.46499 * 120.00118 * 179.97438 * 9 7 2 11 11 C 1.53001 * 109.47607 * 180.02562 * 10 9 7 12 12 C 1.52998 * 109.47426 * 180.02562 * 11 10 9 13 13 H 1.08998 * 109.49689 * 55.05660 * 12 11 10 14 14 C 1.53042 * 109.49626 * 295.00037 * 12 11 10 15 15 C 1.53038 * 109.53884 * 178.68337 * 14 12 11 16 16 C 1.53189 * 109.31174 * 61.36493 * 15 14 12 17 17 N 1.46923 * 108.77570 * 305.36206 * 16 15 14 18 18 C 1.34775 * 120.63475 * 233.58598 * 17 16 15 19 19 O 1.21283 * 120.00426 * 179.97438 * 18 17 16 20 20 C 1.50702 * 119.99785 * 0.02562 * 18 17 16 21 21 C 1.53003 * 109.46874 * 179.97438 * 20 18 17 22 22 C 1.53003 * 109.47017 * 179.97438 * 21 20 18 23 23 C 1.52996 * 109.47301 * 179.97438 * 22 21 20 24 24 N 1.46498 * 109.47059 * 179.97438 * 23 22 21 25 25 C 1.34777 * 119.99828 * 179.72339 * 24 23 22 26 26 N 1.34777 * 120.00128 * 180.27942 * 25 24 23 27 27 O 1.21593 * 119.99949 * 0.28071 * 25 24 23 28 28 C 1.46925 * 118.73793 * 53.86221 * 17 16 15 29 29 H 0.96997 * 120.00028 * 0.02562 * 1 2 3 30 30 H 0.97003 * 120.00180 * 0.02562 * 9 7 2 31 31 H 1.09000 * 109.47359 * 59.99429 * 10 9 7 32 32 H 1.09008 * 109.47000 * 300.00288 * 10 9 7 33 33 H 1.08995 * 109.46767 * 59.99824 * 11 10 9 34 34 H 1.08998 * 109.46721 * 299.99823 * 11 10 9 35 35 H 1.08995 * 109.46250 * 58.65967 * 14 12 11 36 36 H 1.09000 * 109.46223 * 298.70527 * 14 12 11 37 37 H 1.08995 * 109.49524 * 301.41261 * 15 14 12 38 38 H 1.09008 * 109.49548 * 181.31486 * 15 14 12 39 39 H 1.09006 * 109.58819 * 185.57903 * 16 15 14 40 40 H 1.09002 * 109.70762 * 65.22429 * 16 15 14 41 41 H 1.08998 * 109.47129 * 59.99946 * 20 18 17 42 42 H 1.09003 * 109.46980 * 299.99152 * 20 18 17 43 43 H 1.08990 * 109.47421 * 59.99778 * 21 20 18 44 44 H 1.09002 * 109.47073 * 299.99063 * 21 20 18 45 45 H 1.09004 * 109.47038 * 59.99615 * 22 21 20 46 46 H 1.09000 * 109.46939 * 300.00268 * 22 21 20 47 47 H 1.09004 * 109.47066 * 60.00027 * 23 22 21 48 48 H 1.08994 * 109.46974 * 300.00175 * 23 22 21 49 49 H 0.97001 * 120.00384 * 0.02562 * 24 23 22 50 50 H 0.97000 * 119.99549 * 359.97438 * 26 25 24 51 51 H 0.96996 * 119.99887 * 180.02562 * 26 25 24 52 52 H 1.09004 * 109.58864 * 65.92751 * 28 17 16 53 53 H 1.08996 * 109.58834 * 186.35234 * 28 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4977 2.0464 -1.3999 5 1 1.4476 2.6527 0.7000 6 1 3.5478 1.4402 0.7001 7 6 2.0103 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 2.0580 -3.6568 0.0005 11 6 1.0638 -4.8198 -0.0001 12 6 1.8288 -6.1448 0.0005 13 1 2.5198 -6.1655 0.8433 14 6 2.6132 -6.2824 -1.3064 15 6 3.4046 -7.5921 -1.2929 16 6 2.4319 -8.7708 -1.1864 17 7 1.5747 -8.5716 -0.0099 18 6 1.4654 -9.5309 0.9305 19 8 0.7548 -9.3542 1.8973 20 6 2.2271 -10.8226 0.7812 21 6 1.9294 -11.7312 1.9757 22 6 2.7022 -13.0429 1.8238 23 6 2.4050 -13.9512 3.0186 24 7 3.1446 -15.2074 2.8728 25 6 3.0403 -16.1641 3.8164 26 7 3.7250 -17.3176 3.6852 27 8 2.3285 -15.9867 4.7861 28 6 0.8340 -7.3093 0.1189 29 1 -0.4850 0.8400 -0.0004 30 1 0.3555 -2.3881 -0.0002 31 1 2.6848 -3.7146 0.8905 32 1 2.6848 -3.7145 -0.8895 33 1 0.4376 -4.7618 -0.8903 34 1 0.4369 -4.7622 0.8897 35 1 3.3014 -5.4432 -1.4069 36 1 1.9198 -6.2857 -2.1474 37 1 4.0806 -7.5999 -0.4379 38 1 3.9812 -7.6783 -2.2139 39 1 2.9930 -9.6989 -1.0767 40 1 1.8152 -8.8206 -2.0838 41 1 3.2958 -10.6119 0.7429 42 1 1.9216 -11.3203 -0.1392 43 1 0.8608 -11.9419 2.0145 44 1 2.2352 -11.2334 2.8959 45 1 3.7710 -12.8325 1.7848 46 1 2.3961 -13.5405 0.9036 47 1 1.3362 -14.1617 3.0580 48 1 2.7115 -13.4534 3.9385 49 1 3.7127 -15.3489 2.0995 50 1 4.2926 -17.4593 2.9114 51 1 3.6497 -18.0062 4.3641 52 1 0.0897 -7.2397 -0.6744 53 1 0.3403 -7.2727 1.0900 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001568062132.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:14:22 Heat of formation + Delta-G solvation = -117.996697 kcal Electronic energy + Delta-G solvation = -28701.824207 eV Core-core repulsion = 24606.037979 eV Total energy + Delta-G solvation = -4095.786228 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.226 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -41.27258 -40.80807 -39.00956 -37.05667 -36.88896 -35.10028 -34.90235 -34.08615 -33.14214 -32.40776 -30.39779 -28.93123 -26.61389 -25.97067 -24.83028 -23.45612 -22.83820 -22.34277 -21.96892 -21.08132 -19.79100 -19.19052 -19.10167 -18.20978 -17.95130 -17.15463 -16.90168 -16.66101 -16.46453 -16.00630 -15.75394 -15.70581 -15.52297 -15.29934 -15.22253 -14.98654 -14.77222 -14.42847 -14.21280 -14.04947 -13.66715 -13.41599 -13.19715 -12.95991 -12.86864 -12.71674 -12.46765 -12.41225 -12.39337 -12.13365 -12.03858 -11.94004 -11.80241 -11.66647 -11.53688 -11.51883 -11.49462 -11.25260 -10.92042 -10.74653 -10.71771 -9.96419 -9.58686 -9.01582 -7.96808 -5.26422 1.46144 1.48618 1.57122 1.68250 1.93152 2.10605 2.16737 2.55208 3.36761 3.53944 3.69628 3.71700 3.80930 3.84880 3.90895 4.04397 4.11217 4.17847 4.32919 4.36961 4.37826 4.40725 4.50167 4.58275 4.60997 4.66873 4.76264 4.77030 4.84312 4.86056 4.88376 4.90832 4.93704 5.04497 5.06796 5.17896 5.24739 5.33625 5.33781 5.41780 5.45014 5.46957 5.51240 5.53581 5.59413 5.92083 6.04503 6.25577 6.49790 7.13705 7.23528 7.31190 7.66590 8.07548 8.30747 9.27053 Molecular weight = 340.23amu Principal moments of inertia in cm(-1) A = 0.026631 B = 0.001371 C = 0.001348 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1051.167926 B =20417.889675 C =20758.950260 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.971 5.971 2 C -0.076 4.076 3 Si 0.976 3.024 4 H -0.283 1.283 5 H -0.295 1.295 6 H -0.269 1.269 7 C -0.250 4.250 8 H 0.076 0.924 9 N -0.750 5.750 10 C 0.155 3.845 11 C -0.109 4.109 12 C -0.082 4.082 13 H 0.061 0.939 14 C -0.118 4.118 15 C -0.129 4.129 16 C 0.103 3.897 17 N -0.612 5.612 18 C 0.500 3.500 19 O -0.597 6.597 20 C -0.127 4.127 21 C -0.102 4.102 22 C -0.111 4.111 23 C 0.134 3.866 24 N -0.730 5.730 25 C 0.693 3.307 26 N -0.848 5.848 27 O -0.655 6.655 28 C 0.119 3.881 29 H 0.252 0.748 30 H 0.372 0.628 31 H 0.010 0.990 32 H 0.031 0.969 33 H 0.065 0.935 34 H 0.049 0.951 35 H 0.061 0.939 36 H 0.069 0.931 37 H 0.063 0.937 38 H 0.101 0.899 39 H 0.120 0.880 40 H 0.083 0.917 41 H 0.122 0.878 42 H 0.126 0.874 43 H 0.053 0.947 44 H 0.050 0.950 45 H 0.093 0.907 46 H 0.095 0.905 47 H 0.048 0.952 48 H 0.046 0.954 49 H 0.416 0.584 50 H 0.416 0.584 51 H 0.419 0.581 52 H 0.075 0.925 53 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.990 -37.663 -5.999 40.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.622 5.622 2 C -0.268 4.268 3 Si 0.805 3.195 4 H -0.210 1.210 5 H -0.221 1.221 6 H -0.194 1.194 7 C -0.381 4.381 8 H 0.094 0.906 9 N -0.392 5.392 10 C 0.028 3.972 11 C -0.147 4.147 12 C -0.102 4.102 13 H 0.079 0.921 14 C -0.156 4.156 15 C -0.167 4.167 16 C -0.019 4.019 17 N -0.344 5.344 18 C 0.291 3.709 19 O -0.478 6.478 20 C -0.166 4.166 21 C -0.141 4.141 22 C -0.149 4.149 23 C 0.009 3.991 24 N -0.387 5.387 25 C 0.391 3.609 26 N -0.417 5.417 27 O -0.538 6.538 28 C -0.005 4.005 29 H 0.061 0.939 30 H 0.204 0.796 31 H 0.028 0.972 32 H 0.048 0.952 33 H 0.084 0.916 34 H 0.067 0.933 35 H 0.079 0.921 36 H 0.088 0.912 37 H 0.081 0.919 38 H 0.119 0.881 39 H 0.138 0.862 40 H 0.102 0.898 41 H 0.140 0.860 42 H 0.144 0.856 43 H 0.072 0.928 44 H 0.069 0.931 45 H 0.111 0.889 46 H 0.114 0.886 47 H 0.067 0.933 48 H 0.065 0.935 49 H 0.254 0.746 50 H 0.247 0.753 51 H 0.251 0.749 52 H 0.093 0.907 53 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 12.178 -37.188 -4.784 39.422 hybrid contribution -0.096 1.194 0.161 1.209 sum 12.082 -35.994 -4.623 38.248 Atomic orbital electron populations 1.69828 1.06739 1.26173 1.59428 1.25619 0.96428 1.01266 1.03503 0.85101 0.77646 0.79168 0.77617 1.21008 1.22121 1.19423 1.19667 0.91540 0.85448 1.41484 0.90642 1.42637 1.05659 1.01459 1.89464 1.20820 0.94118 0.84716 0.97500 1.21568 0.97979 0.93538 1.01616 1.21360 0.96940 0.92490 0.99399 0.92093 1.21643 0.99169 0.98696 0.96059 1.21915 0.97736 0.93374 1.03700 1.22096 0.92516 1.00196 0.87043 1.48310 1.46519 1.15908 1.23659 1.21650 0.81562 0.86636 0.81075 1.90701 1.42840 1.81450 1.32809 1.21736 1.02086 0.90946 1.01817 1.21190 1.00495 0.94862 0.97569 1.21664 1.02055 0.93666 0.97493 1.21177 0.95528 0.83118 0.99270 1.44906 1.51836 1.16606 1.25370 1.16336 0.80355 0.81625 0.82628 1.42795 1.51380 1.17357 1.30160 1.90961 1.46544 1.81662 1.34601 1.21568 0.93943 0.82765 1.02202 0.93941 0.79600 0.97235 0.95157 0.91632 0.93250 0.92070 0.91242 0.91861 0.88097 0.86186 0.89842 0.85961 0.85577 0.92794 0.93116 0.88888 0.88637 0.93336 0.93525 0.74638 0.75307 0.74856 0.90691 0.91822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.89 13.06 21.65 0.28 -60.61 16 2 C -0.08 -4.47 5.50 84.86 0.47 -4.01 16 3 Si 0.98 46.80 29.55 68.60 2.03 48.83 16 4 H -0.28 -13.18 7.11 99.48 0.71 -12.48 16 5 H -0.29 -14.19 7.11 99.48 0.71 -13.48 16 6 H -0.27 -12.21 7.11 99.48 0.71 -11.51 16 7 C -0.25 -14.40 9.99 84.04 0.84 -13.56 16 8 H 0.08 4.16 7.83 -2.91 -0.02 4.14 16 9 N -0.75 -39.81 5.60 -343.44 -1.92 -41.73 16 10 C 0.15 6.36 6.02 86.38 0.52 6.88 16 11 C -0.11 -3.58 4.80 30.59 0.15 -3.44 16 12 C -0.08 -2.08 2.35 -10.57 -0.02 -2.10 16 13 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 14 C -0.12 -2.35 4.95 30.62 0.15 -2.20 16 15 C -0.13 -1.57 6.08 30.67 0.19 -1.39 16 16 C 0.10 0.99 6.34 86.36 0.55 1.53 16 17 N -0.61 -11.31 2.97 -818.08 -2.43 -13.74 16 18 C 0.50 10.37 7.70 87.66 0.67 11.04 16 19 O -0.60 -18.98 15.39 -3.04 -0.05 -19.02 16 20 C -0.13 -1.15 4.05 29.85 0.12 -1.03 16 21 C -0.10 -1.24 4.50 30.60 0.14 -1.10 16 22 C -0.11 -0.58 5.33 30.59 0.16 -0.41 16 23 C 0.13 1.64 5.67 86.38 0.49 2.13 16 24 N -0.73 -6.47 5.56 -478.54 -2.66 -9.13 16 25 C 0.69 10.67 8.84 179.05 1.58 12.25 16 26 N -0.85 -4.58 8.88 -184.74 -1.64 -6.22 16 27 O -0.66 -18.23 17.18 -4.01 -0.07 -18.30 16 28 C 0.12 2.87 5.75 86.51 0.50 3.36 16 29 H 0.25 15.23 8.31 -92.71 -0.77 14.46 16 30 H 0.37 21.02 7.67 -92.71 -0.71 20.31 16 31 H 0.01 0.41 8.14 -2.39 -0.02 0.39 16 32 H 0.03 1.20 6.54 -2.38 -0.02 1.19 16 33 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 34 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 35 H 0.06 1.40 6.51 -2.39 -0.02 1.39 16 36 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 37 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 38 H 0.10 0.78 8.14 -2.38 -0.02 0.76 16 39 H 0.12 0.30 5.93 -2.38 -0.01 0.29 16 40 H 0.08 0.65 8.14 -2.39 -0.02 0.63 16 41 H 0.12 0.48 7.69 -2.39 -0.02 0.46 16 42 H 0.13 0.37 7.94 -2.39 -0.02 0.35 16 43 H 0.05 0.88 8.10 -2.39 -0.02 0.86 16 44 H 0.05 0.87 8.10 -2.39 -0.02 0.85 16 45 H 0.09 0.14 8.14 -2.38 -0.02 0.13 16 46 H 0.10 0.10 8.14 -2.39 -0.02 0.08 16 47 H 0.05 0.79 8.14 -2.38 -0.02 0.77 16 48 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 49 H 0.42 0.20 8.49 -92.71 -0.79 -0.58 16 50 H 0.42 -1.02 8.84 -92.71 -0.82 -1.84 16 51 H 0.42 1.96 8.93 -92.71 -0.83 1.13 16 52 H 0.07 1.68 8.14 -2.39 -0.02 1.67 16 53 H 0.06 1.92 7.00 -2.39 -0.02 1.90 16 Total: -1.00 -89.52 421.11 -2.17 -91.69 By element: Atomic # 1 Polarization: 22.49 SS G_CDS: -2.21 Total: 20.28 kcal Atomic # 6 Polarization: 1.45 SS G_CDS: 6.50 Total: 7.95 kcal Atomic # 7 Polarization: -123.06 SS G_CDS: -8.37 Total: -131.43 kcal Atomic # 8 Polarization: -37.20 SS G_CDS: -0.12 Total: -37.32 kcal Atomic # 14 Polarization: 46.80 SS G_CDS: 2.03 Total: 48.83 kcal Total: -89.52 -2.17 -91.69 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568062132.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.312 kcal (2) G-P(sol) polarization free energy of solvation -89.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.831 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.685 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.997 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds