Wall clock time and date at job start Sat Apr 11 2020 06:14:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.47139 * 2 1 4 4 C 1.53003 * 109.46840 * 119.99774 * 2 1 3 5 5 C 1.53005 * 109.46965 * 65.00068 * 4 2 1 6 6 H 1.08994 * 109.47148 * 304.99648 * 5 4 2 7 7 C 1.52999 * 109.46832 * 184.99898 * 5 4 2 8 8 N 1.46500 * 109.46701 * 185.00259 * 7 5 4 9 9 C 1.36943 * 119.99830 * 180.02562 * 8 7 5 10 10 H 1.08001 * 120.00029 * 359.97438 * 9 8 7 11 11 C 1.38812 * 120.00205 * 179.97438 * 9 8 7 12 12 N 1.31621 * 119.99600 * 359.97438 * 11 9 8 13 13 Si 1.86797 * 120.00064 * 179.97438 * 11 9 8 14 14 H 1.48506 * 109.47290 * 359.97438 * 13 11 9 15 15 H 1.48496 * 109.47319 * 120.00078 * 13 11 9 16 16 H 1.48498 * 109.46971 * 239.99978 * 13 11 9 17 17 N 1.46497 * 109.47243 * 64.99859 * 5 4 2 18 18 C 1.34780 * 119.99806 * 275.00100 * 17 5 4 19 19 O 1.21272 * 120.00121 * 0.02562 * 18 17 5 20 20 C 1.50709 * 119.99514 * 179.97438 * 18 17 5 21 21 H 1.08998 * 109.58874 * 340.62258 * 20 18 17 22 22 C 1.53192 * 109.58566 * 101.05003 * 20 18 17 23 23 C 1.53037 * 109.31113 * 174.41694 * 22 20 18 24 24 C 1.53070 * 109.66218 * 298.69859 * 23 22 20 25 25 C 1.53192 * 109.29053 * 61.15348 * 24 23 22 26 26 N 1.46921 * 109.58283 * 220.33680 * 20 18 17 27 27 C 1.34780 * 120.63399 * 6.63091 * 26 20 18 28 28 N 1.34775 * 120.00270 * 183.36623 * 27 26 20 29 29 O 1.21585 * 119.99706 * 3.36392 * 27 26 20 30 30 H 1.09004 * 109.47261 * 300.00129 * 1 2 3 31 31 H 1.09003 * 109.47070 * 60.00121 * 1 2 3 32 32 H 1.08999 * 109.47130 * 180.02562 * 1 2 3 33 33 H 1.08998 * 109.46897 * 239.99629 * 2 1 3 34 34 H 1.09004 * 109.46938 * 180.02562 * 3 2 1 35 35 H 1.09003 * 109.47041 * 299.99897 * 3 2 1 36 36 H 1.09004 * 109.47150 * 59.99803 * 3 2 1 37 37 H 1.08998 * 109.47038 * 304.99907 * 4 2 1 38 38 H 1.09003 * 109.47040 * 184.99790 * 4 2 1 39 39 H 1.09006 * 109.47213 * 304.99688 * 7 5 4 40 40 H 1.08998 * 109.47439 * 65.00125 * 7 5 4 41 41 H 0.96995 * 120.00296 * 359.97438 * 8 7 5 42 42 H 0.97001 * 119.99617 * 180.02562 * 12 11 9 43 43 H 0.97003 * 120.00087 * 94.99381 * 17 5 4 44 44 H 1.08998 * 109.49779 * 294.37133 * 22 20 18 45 45 H 1.09011 * 109.49310 * 54.43494 * 22 20 18 46 46 H 1.09001 * 109.45986 * 58.66149 * 23 22 20 47 47 H 1.09004 * 109.46035 * 178.62816 * 23 22 20 48 48 H 1.08999 * 109.38962 * 301.28270 * 24 23 22 49 49 H 1.08993 * 109.62458 * 181.16835 * 24 23 22 50 50 H 1.09009 * 109.58892 * 185.71790 * 25 24 23 51 51 H 1.09006 * 109.59032 * 65.43975 * 25 24 23 52 52 H 0.96997 * 119.99693 * 5.39508 * 28 27 26 53 53 H 0.96998 * 119.99757 * 185.39431 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 1.6351 -2.1955 1.1880 6 1 0.5562 -2.2707 1.0528 7 6 2.0352 -2.8888 2.4919 8 7 1.7568 -4.3233 2.3875 9 6 2.0348 -5.1531 3.4408 10 1 2.4596 -4.7501 4.3483 11 6 1.7705 -6.5123 3.3422 12 7 1.2522 -7.0033 2.2364 13 14 2.1503 -7.6443 4.7787 14 1 2.7238 -6.8513 5.8957 15 1 0.9005 -8.3061 5.2314 16 1 3.1294 -8.6755 4.3507 17 7 2.3146 -2.8421 0.0627 18 6 1.7813 -2.7779 -1.1734 19 8 0.7393 -2.1844 -1.3542 20 6 2.4807 -3.4426 -2.3312 21 1 3.5258 -3.6168 -2.0755 22 6 1.7969 -4.7767 -2.6467 23 6 2.4211 -5.3796 -3.9072 24 6 2.2051 -4.4343 -5.0916 25 6 2.8905 -3.0952 -4.8019 26 7 2.4009 -2.5784 -3.5166 27 6 1.8888 -1.3349 -3.4268 28 7 1.7590 -0.5779 -4.5342 29 8 1.5440 -0.8961 -2.3466 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 1.8933 -0.5139 -0.8899 34 1 3.1300 1.4425 -0.0005 35 1 1.6767 1.9563 -0.8900 36 1 1.6766 1.9564 0.8900 37 1 1.6053 -0.2617 2.1370 38 1 3.1263 -0.6444 1.2952 39 1 3.0996 -2.7374 2.6722 40 1 1.4631 -2.4668 3.3182 41 1 1.3749 -4.6852 1.5727 42 1 1.0672 -7.9530 2.1676 43 1 3.1483 -3.3164 0.2072 44 1 1.9327 -5.4619 -1.8100 45 1 0.7323 -4.6098 -2.8113 46 1 3.4901 -5.5233 -3.7500 47 1 1.9530 -6.3407 -4.1202 48 1 1.1368 -4.2725 -5.2353 49 1 2.6316 -4.8737 -5.9932 50 1 2.6553 -2.3851 -5.5948 51 1 3.9696 -3.2406 -4.7501 52 1 1.9602 -0.9543 -5.4053 53 1 1.4645 0.3433 -4.4602 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001568337236.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:14:26 Heat of formation + Delta-G solvation = -23.443679 kcal Electronic energy + Delta-G solvation = -33212.929877 eV Core-core repulsion = 29121.243775 eV Total energy + Delta-G solvation = -4091.686102 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.226 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -42.02538 -40.03860 -38.36155 -37.61359 -36.31432 -34.95597 -34.52283 -33.21606 -32.97306 -31.97340 -30.37402 -27.84627 -27.12050 -26.56710 -24.90173 -24.48461 -22.76934 -22.30207 -21.21227 -20.96269 -19.95307 -19.51509 -19.03543 -18.01408 -17.41605 -16.97203 -16.91210 -16.48041 -16.24725 -15.62572 -15.45129 -15.28470 -15.22727 -15.14320 -14.91658 -14.48201 -14.42942 -14.28034 -14.19953 -13.77623 -13.65136 -13.10774 -13.08744 -12.95579 -12.88715 -12.80215 -12.52711 -12.42011 -12.25267 -12.09195 -12.02078 -11.85305 -11.71637 -11.61165 -11.44171 -11.21299 -10.96464 -10.91839 -10.72133 -10.05418 -9.94910 -9.54616 -8.97514 -8.90980 -7.91450 -5.20445 1.48915 1.49972 1.59708 1.70562 2.04260 2.46326 2.58166 2.67044 3.41833 3.47132 3.74827 3.84789 3.90184 3.98382 4.11325 4.13160 4.19954 4.26310 4.29605 4.38563 4.52172 4.54688 4.57881 4.65602 4.76561 4.84903 4.85218 4.93543 4.94446 4.99824 5.02699 5.06436 5.09870 5.14387 5.19548 5.21837 5.26534 5.33892 5.45366 5.50586 5.53513 5.59727 5.76660 5.87897 5.95278 5.99274 6.29482 6.58632 6.91319 7.15959 7.36900 7.69960 8.10274 8.24685 8.36621 9.31661 Molecular weight = 340.23amu Principal moments of inertia in cm(-1) A = 0.010734 B = 0.004208 C = 0.003163 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2607.876077 B = 6652.258482 C = 8851.435092 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.130 4.130 3 C -0.128 4.128 4 C -0.111 4.111 5 C 0.159 3.841 6 H 0.054 0.946 7 C 0.146 3.854 8 N -0.739 5.739 9 C -0.244 4.244 10 H 0.075 0.925 11 C -0.070 4.070 12 N -0.965 5.965 13 Si 0.971 3.029 14 H -0.268 1.268 15 H -0.297 1.297 16 H -0.291 1.291 17 N -0.714 5.714 18 C 0.490 3.510 19 O -0.493 6.493 20 C 0.157 3.843 21 H 0.100 0.900 22 C -0.119 4.119 23 C -0.113 4.113 24 C -0.131 4.131 25 C 0.111 3.889 26 N -0.618 5.618 27 C 0.666 3.334 28 N -0.856 5.856 29 O -0.551 6.551 30 H 0.025 0.975 31 H 0.029 0.971 32 H 0.040 0.960 33 H 0.147 0.853 34 H 0.047 0.953 35 H 0.044 0.956 36 H 0.043 0.957 37 H 0.060 0.940 38 H 0.064 0.936 39 H 0.035 0.965 40 H 0.027 0.973 41 H 0.376 0.624 42 H 0.250 0.750 43 H 0.400 0.600 44 H 0.065 0.935 45 H 0.047 0.953 46 H 0.080 0.920 47 H 0.071 0.929 48 H 0.054 0.946 49 H 0.105 0.895 50 H 0.102 0.898 51 H 0.087 0.913 52 H 0.402 0.598 53 H 0.414 0.586 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.209 11.214 -20.091 24.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.147 4.147 3 C -0.186 4.186 4 C -0.150 4.150 5 C 0.054 3.946 6 H 0.073 0.927 7 C 0.019 3.981 8 N -0.382 5.382 9 C -0.376 4.376 10 H 0.093 0.907 11 C -0.263 4.263 12 N -0.616 5.616 13 Si 0.801 3.199 14 H -0.192 1.192 15 H -0.225 1.225 16 H -0.218 1.218 17 N -0.367 5.367 18 C 0.276 3.724 19 O -0.366 6.366 20 C 0.049 3.951 21 H 0.118 0.882 22 C -0.158 4.158 23 C -0.150 4.150 24 C -0.169 4.169 25 C -0.011 4.011 26 N -0.358 5.358 27 C 0.368 3.632 28 N -0.428 5.428 29 O -0.430 6.430 30 H 0.044 0.956 31 H 0.049 0.951 32 H 0.059 0.941 33 H 0.163 0.837 34 H 0.066 0.934 35 H 0.063 0.937 36 H 0.062 0.938 37 H 0.079 0.921 38 H 0.082 0.918 39 H 0.053 0.947 40 H 0.045 0.955 41 H 0.208 0.792 42 H 0.059 0.941 43 H 0.234 0.766 44 H 0.084 0.916 45 H 0.066 0.934 46 H 0.099 0.901 47 H 0.090 0.910 48 H 0.073 0.927 49 H 0.123 0.877 50 H 0.120 0.880 51 H 0.105 0.895 52 H 0.235 0.765 53 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges 6.320 11.790 -19.285 23.471 hybrid contribution -0.166 -1.001 0.529 1.144 sum 6.154 10.790 -18.756 22.496 Atomic orbital electron populations 1.21460 0.96909 1.00051 0.97810 1.22040 0.95376 0.96127 1.01189 1.21678 0.99932 0.96640 1.00331 1.21936 1.00670 0.93497 0.98879 1.20896 0.96445 0.92187 0.85076 0.92746 1.21079 0.98065 0.84122 0.94839 1.42484 1.76388 1.02654 1.16648 1.19659 1.33481 0.89572 0.94893 0.90712 1.25495 1.02503 0.98380 0.99890 1.69835 1.51287 1.12506 1.27926 0.85108 0.76769 0.78889 0.79170 1.19226 1.22488 1.21772 1.45691 1.27378 1.56668 1.06960 1.20261 0.87318 0.80769 0.84079 1.90724 1.24188 1.38560 1.83176 1.20787 1.00214 0.90106 0.84038 0.88186 1.21759 0.99509 0.94307 1.00204 1.21491 1.01692 0.98820 0.93007 1.21937 1.01015 0.95075 0.98863 1.21917 0.99482 0.96116 0.83550 1.46920 1.66405 1.12772 1.09743 1.16789 0.78914 0.82018 0.85450 1.43069 1.75739 1.16202 1.07786 1.90779 1.54530 1.72553 1.25172 0.95623 0.95142 0.94146 0.83692 0.93392 0.93683 0.93826 0.92133 0.91753 0.94736 0.95526 0.79204 0.94115 0.76605 0.91612 0.93403 0.90131 0.91039 0.92734 0.87695 0.87983 0.89501 0.76526 0.75396 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.79 7.71 71.98 0.55 -3.24 16 2 C -0.13 -4.31 2.05 -10.79 -0.02 -4.33 16 3 C -0.13 -3.62 9.19 71.98 0.66 -2.96 16 4 C -0.11 -3.61 4.36 30.60 0.13 -3.48 16 5 C 0.16 5.96 2.33 44.99 0.10 6.07 16 6 H 0.05 2.39 5.92 -2.39 -0.01 2.38 16 7 C 0.15 6.07 5.82 86.38 0.50 6.57 16 8 N -0.74 -37.89 5.43 -343.44 -1.87 -39.75 16 9 C -0.24 -13.66 9.99 84.03 0.84 -12.82 16 10 H 0.07 4.03 7.83 -2.91 -0.02 4.01 16 11 C -0.07 -4.01 5.50 84.86 0.47 -3.55 16 12 N -0.96 -58.66 13.06 21.65 0.28 -58.37 16 13 Si 0.97 46.11 29.55 68.60 2.03 48.14 16 14 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 15 H -0.30 -14.28 7.11 99.48 0.71 -13.57 16 16 H -0.29 -13.63 7.11 99.48 0.71 -12.92 16 17 N -0.71 -24.69 4.47 -442.54 -1.98 -26.67 16 18 C 0.49 16.79 4.67 87.66 0.41 17.20 16 19 O -0.49 -19.64 8.80 22.11 0.19 -19.45 16 20 C 0.16 4.07 3.29 44.23 0.15 4.22 16 21 H 0.10 2.25 8.05 -2.39 -0.02 2.24 16 22 C -0.12 -3.10 5.36 30.67 0.16 -2.93 16 23 C -0.11 -1.93 5.88 30.63 0.18 -1.75 16 24 C -0.13 -1.60 6.09 30.68 0.19 -1.41 16 25 C 0.11 1.30 6.43 86.36 0.56 1.85 16 26 N -0.62 -13.08 2.97 -817.05 -2.43 -15.51 16 27 C 0.67 16.62 8.20 179.05 1.47 18.09 16 28 N -0.86 -13.27 8.77 -184.75 -1.62 -14.89 16 29 O -0.55 -18.15 7.87 21.13 0.17 -17.99 16 30 H 0.02 0.85 8.14 -2.38 -0.02 0.83 16 31 H 0.03 1.09 8.14 -2.39 -0.02 1.07 16 32 H 0.04 1.68 4.76 -2.39 -0.01 1.67 16 33 H 0.15 5.20 2.19 -93.27 -0.20 5.00 16 34 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 35 H 0.04 1.24 8.14 -2.39 -0.02 1.22 16 36 H 0.04 1.15 8.14 -2.38 -0.02 1.13 16 37 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 38 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 39 H 0.03 1.37 8.14 -2.38 -0.02 1.35 16 40 H 0.03 1.13 8.14 -2.39 -0.02 1.12 16 41 H 0.38 20.71 7.33 -92.71 -0.68 20.03 16 42 H 0.25 14.72 8.31 -92.71 -0.77 13.95 16 43 H 0.40 13.11 8.53 -92.71 -0.79 12.32 16 44 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 45 H 0.05 1.47 8.14 -2.38 -0.02 1.46 16 46 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 47 H 0.07 1.22 8.14 -2.38 -0.02 1.20 16 48 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 49 H 0.10 0.71 8.14 -2.39 -0.02 0.69 16 50 H 0.10 0.65 5.57 -2.38 -0.01 0.64 16 51 H 0.09 0.76 8.14 -2.38 -0.02 0.74 16 52 H 0.40 3.50 6.31 -92.71 -0.58 2.92 16 53 H 0.41 5.96 8.93 -92.71 -0.83 5.13 16 Total: -1.00 -73.65 393.12 -1.00 -74.65 By element: Atomic # 1 Polarization: 54.44 SS G_CDS: -2.13 Total: 52.31 kcal Atomic # 6 Polarization: 11.18 SS G_CDS: 6.35 Total: 17.53 kcal Atomic # 7 Polarization: -147.58 SS G_CDS: -7.61 Total: -155.20 kcal Atomic # 8 Polarization: -37.80 SS G_CDS: 0.36 Total: -37.43 kcal Atomic # 14 Polarization: 46.11 SS G_CDS: 2.03 Total: 48.14 kcal Total: -73.65 -1.00 -74.65 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568337236.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.209 kcal (2) G-P(sol) polarization free energy of solvation -73.649 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.653 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds