Wall clock time and date at job start Sat Apr 11 2020 06:11:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86806 * 119.99883 * 2 1 4 4 H 1.48496 * 109.46854 * 269.99613 * 3 2 1 5 5 H 1.48500 * 109.46762 * 29.99668 * 3 2 1 6 6 H 1.48503 * 109.46841 * 149.99710 * 3 2 1 7 7 C 1.38820 * 120.00354 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00277 * 180.02562 * 7 2 1 9 9 N 1.36930 * 119.99556 * 0.02562 * 7 2 1 10 10 C 1.46500 * 120.00020 * 180.02562 * 9 7 2 11 11 C 1.53002 * 109.47579 * 180.02562 * 10 9 7 12 12 C 1.52998 * 109.47087 * 185.07216 * 11 10 9 13 13 H 1.09000 * 109.58350 * 61.34498 * 12 11 10 14 14 C 1.53187 * 109.70634 * 300.99024 * 12 11 10 15 15 C 1.53038 * 109.31349 * 185.50863 * 14 12 11 16 16 C 1.53047 * 109.53805 * 61.36496 * 15 14 12 17 17 C 1.53624 * 109.23982 * 298.51159 * 16 15 14 18 18 N 1.46923 * 108.54265 * 54.85684 * 17 16 15 19 19 C 1.34777 * 120.63153 * 126.37153 * 18 17 16 20 20 O 1.21275 * 120.00380 * 174.21802 * 19 18 17 21 21 C 1.50699 * 119.99890 * 354.20898 * 19 18 17 22 22 C 1.52997 * 109.47387 * 180.02562 * 21 19 18 23 23 C 1.52998 * 109.47218 * 180.02562 * 22 21 19 24 24 C 1.53007 * 109.47221 * 179.97438 * 23 22 21 25 25 N 1.46491 * 109.47213 * 179.97438 * 24 23 22 26 26 C 1.34778 * 120.00132 * 179.97438 * 25 24 23 27 27 N 1.34770 * 120.00532 * 180.02562 * 26 25 24 28 28 O 1.21588 * 119.99892 * 0.02562 * 26 25 24 29 29 H 0.97001 * 120.00174 * 0.02562 * 1 2 3 30 30 H 0.97005 * 120.00708 * 0.02562 * 9 7 2 31 31 H 1.08999 * 109.47193 * 59.99422 * 10 9 7 32 32 H 1.09002 * 109.46739 * 300.00285 * 10 9 7 33 33 H 1.09003 * 109.46639 * 65.07215 * 11 10 9 34 34 H 1.09000 * 109.46791 * 305.07383 * 11 10 9 35 35 H 1.09003 * 109.49745 * 305.46142 * 14 12 11 36 36 H 1.08997 * 109.49842 * 65.55498 * 14 12 11 37 37 H 1.09004 * 109.46312 * 181.38569 * 15 14 12 38 38 H 1.08997 * 109.46395 * 301.35928 * 15 14 12 39 39 H 1.09000 * 109.49802 * 58.58984 * 16 15 14 40 40 H 1.09005 * 109.49721 * 178.68450 * 16 15 14 41 41 H 1.08995 * 109.74025 * 295.11914 * 17 16 15 42 42 H 1.09001 * 109.66288 * 174.55070 * 17 16 15 43 43 H 1.08999 * 109.46904 * 60.00523 * 21 19 18 44 44 H 1.08998 * 109.47413 * 300.00911 * 21 19 18 45 45 H 1.08999 * 109.46808 * 60.00297 * 22 21 19 46 46 H 1.08998 * 109.47451 * 300.00720 * 22 21 19 47 47 H 1.08999 * 109.47132 * 60.00320 * 23 22 21 48 48 H 1.09003 * 109.47476 * 299.99876 * 23 22 21 49 49 H 1.08995 * 109.46959 * 300.00555 * 24 23 22 50 50 H 1.09012 * 109.46571 * 59.99949 * 24 23 22 51 51 H 0.97003 * 120.00167 * 0.02562 * 25 24 23 52 52 H 0.97003 * 119.99767 * 0.02562 * 27 26 25 53 53 H 0.96996 * 120.00599 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4475 2.6527 0.7000 6 1 3.5477 1.4402 0.7001 7 6 2.0103 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0010 9 7 1.3257 -2.3880 0.0005 10 6 2.0581 -3.6568 0.0017 11 6 1.0640 -4.8198 0.0008 12 6 1.8246 -6.1410 0.1295 13 1 2.3706 -6.1579 1.0727 14 6 2.8082 -6.2864 -1.0359 15 6 3.4638 -7.6679 -0.9754 16 6 2.3904 -8.7503 -1.1115 17 6 1.4020 -8.6329 0.0587 18 7 0.8753 -7.2617 0.0897 19 6 -0.4535 -7.0363 0.0875 20 8 -0.8774 -5.9076 0.2188 21 6 -1.4126 -8.1867 -0.0786 22 6 -2.8493 -7.6617 -0.0464 23 6 -3.8231 -8.8298 -0.2143 24 6 -5.2599 -8.3048 -0.1816 25 7 -6.1922 -9.4232 -0.3430 26 6 -7.5210 -9.1979 -0.3447 27 7 -8.3789 -10.2268 -0.4927 28 8 -7.9460 -8.0663 -0.2128 29 1 -0.4850 0.8400 -0.0004 30 1 0.3556 -2.3881 -0.0002 31 1 2.6842 -3.7141 0.8921 32 1 2.6855 -3.7148 -0.8878 33 1 0.4998 -4.8146 -0.9319 34 1 0.3781 -4.7120 0.8410 35 1 2.2730 -6.1786 -1.9793 36 1 3.5757 -5.5160 -0.9624 37 1 4.1824 -7.7649 -1.7893 38 1 3.9779 -7.7846 -0.0214 39 1 1.8591 -8.6194 -2.0542 40 1 2.8606 -9.7335 -1.0918 41 1 1.9142 -8.8489 0.9963 42 1 0.5815 -9.3365 -0.0822 43 1 -1.2680 -8.9002 0.7327 44 1 -1.2274 -8.6794 -1.0330 45 1 -2.9937 -6.9484 -0.8579 46 1 -3.0348 -7.1687 0.9078 47 1 -3.6786 -9.5428 0.5974 48 1 -3.6378 -9.3231 -1.1686 49 1 -5.4449 -7.8118 0.7727 50 1 -5.4046 -7.5915 -0.9931 51 1 -5.8532 -10.3260 -0.4478 52 1 -8.0399 -11.1296 -0.5975 53 1 -9.3352 -10.0646 -0.4943 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001568389490.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:11 Heat of formation + Delta-G solvation = -98.850871 kcal Electronic energy + Delta-G solvation = -29731.941316 eV Core-core repulsion = 25636.985313 eV Total energy + Delta-G solvation = -4094.956003 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.226 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.55184 -40.81866 -38.57793 -37.09561 -36.90109 -35.10083 -34.63889 -33.95854 -33.69460 -32.38885 -30.04181 -29.23925 -26.61403 -25.48314 -25.11165 -23.82824 -22.49620 -22.19925 -21.96585 -21.43945 -19.80512 -19.24709 -19.11789 -18.19596 -17.59177 -17.17982 -17.03682 -16.60307 -16.41844 -15.88311 -15.74638 -15.52144 -15.43672 -15.30846 -15.14256 -14.98543 -14.76010 -14.63573 -14.21954 -14.03815 -13.65408 -13.38530 -13.22730 -12.94344 -12.78302 -12.74594 -12.51620 -12.43308 -12.30189 -12.12697 -12.07178 -11.89095 -11.85442 -11.75569 -11.54688 -11.50987 -11.48503 -11.34435 -10.95075 -10.75048 -9.97188 -9.92531 -9.46816 -9.03655 -7.96576 -5.27782 1.42799 1.47321 1.55875 1.76943 1.93156 2.12114 2.16606 2.53988 3.35265 3.51025 3.68810 3.80570 3.85075 3.91710 3.98737 4.03990 4.13271 4.17209 4.28833 4.32269 4.39667 4.43886 4.51427 4.56120 4.61957 4.70589 4.75675 4.78493 4.82728 4.87000 4.89800 4.95170 5.01739 5.04757 5.15712 5.19785 5.26658 5.33247 5.38794 5.41097 5.43031 5.49936 5.52467 5.53169 5.77193 5.92435 6.04179 6.24195 6.58904 7.14452 7.28344 7.38145 7.66894 8.05793 8.30179 9.27603 Molecular weight = 340.23amu Principal moments of inertia in cm(-1) A = 0.008119 B = 0.002294 C = 0.001810 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3447.780006 B =12201.048730 C =15462.761273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.974 5.974 2 C -0.085 4.085 3 Si 0.984 3.016 4 H -0.284 1.284 5 H -0.294 1.294 6 H -0.265 1.265 7 C -0.249 4.249 8 H 0.079 0.921 9 N -0.749 5.749 10 C 0.148 3.852 11 C -0.092 4.092 12 C 0.156 3.844 13 H 0.074 0.926 14 C -0.129 4.129 15 C -0.117 4.117 16 C -0.130 4.130 17 C 0.101 3.899 18 N -0.612 5.612 19 C 0.491 3.509 20 O -0.578 6.578 21 C -0.124 4.124 22 C -0.104 4.104 23 C -0.107 4.107 24 C 0.133 3.867 25 N -0.728 5.728 26 C 0.692 3.308 27 N -0.846 5.846 28 O -0.655 6.655 29 H 0.251 0.749 30 H 0.369 0.631 31 H 0.017 0.983 32 H 0.023 0.977 33 H 0.039 0.961 34 H 0.062 0.938 35 H 0.050 0.950 36 H 0.068 0.932 37 H 0.074 0.926 38 H 0.072 0.928 39 H 0.061 0.939 40 H 0.104 0.896 41 H 0.082 0.918 42 H 0.117 0.883 43 H 0.126 0.874 44 H 0.121 0.879 45 H 0.045 0.955 46 H 0.049 0.951 47 H 0.097 0.903 48 H 0.094 0.906 49 H 0.046 0.954 50 H 0.043 0.957 51 H 0.417 0.583 52 H 0.416 0.584 53 H 0.419 0.581 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.669 -37.610 -2.041 37.760 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.625 5.625 2 C -0.276 4.276 3 Si 0.811 3.189 4 H -0.211 1.211 5 H -0.220 1.220 6 H -0.190 1.190 7 C -0.380 4.380 8 H 0.097 0.903 9 N -0.391 5.391 10 C 0.021 3.979 11 C -0.130 4.130 12 C 0.052 3.948 13 H 0.092 0.908 14 C -0.167 4.167 15 C -0.154 4.154 16 C -0.168 4.168 17 C -0.020 4.020 18 N -0.345 5.345 19 C 0.282 3.718 20 O -0.458 6.458 21 C -0.163 4.163 22 C -0.143 4.143 23 C -0.145 4.145 24 C 0.008 3.992 25 N -0.385 5.385 26 C 0.390 3.610 27 N -0.415 5.415 28 O -0.538 6.538 29 H 0.060 0.940 30 H 0.200 0.800 31 H 0.035 0.965 32 H 0.041 0.959 33 H 0.057 0.943 34 H 0.081 0.919 35 H 0.069 0.931 36 H 0.087 0.913 37 H 0.092 0.908 38 H 0.091 0.909 39 H 0.080 0.920 40 H 0.122 0.878 41 H 0.100 0.900 42 H 0.135 0.865 43 H 0.144 0.856 44 H 0.139 0.861 45 H 0.064 0.936 46 H 0.068 0.932 47 H 0.116 0.884 48 H 0.113 0.887 49 H 0.064 0.936 50 H 0.062 0.938 51 H 0.254 0.746 52 H 0.247 0.753 53 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges -2.887 -35.981 -1.846 36.144 hybrid contribution -0.371 1.183 -0.111 1.244 sum -3.257 -34.799 -1.957 35.005 Atomic orbital electron populations 1.69885 1.06990 1.26158 1.59458 1.25774 0.96521 1.01710 1.03630 0.84994 0.77626 0.78643 0.77599 1.21076 1.22047 1.18953 1.19720 0.91591 0.85314 1.41402 0.90276 1.42656 1.05548 1.01567 1.89333 1.20986 0.94166 0.85499 0.97262 1.21902 0.96275 0.92837 1.01971 1.21067 0.89787 0.84881 0.99037 0.90813 1.21980 0.98055 0.99477 0.97181 1.21535 0.98089 0.92779 1.03015 1.22002 0.96599 1.00024 0.98217 1.22209 0.99205 0.80861 0.99751 1.48349 1.04955 1.08101 1.73099 1.21686 0.83457 0.91309 0.75385 1.90858 1.78422 1.26001 1.50489 1.21724 0.92179 0.95836 1.06593 1.21194 0.93414 0.97777 1.01929 1.21641 0.90131 0.97783 1.04955 1.21164 0.88990 0.88484 1.00524 1.44862 1.03437 1.11972 1.78259 1.16353 0.82462 0.84684 0.77536 1.42761 1.09673 1.09209 1.79890 1.90971 1.78584 1.24143 1.60106 0.93993 0.80008 0.96467 0.95948 0.94252 0.91923 0.93079 0.91303 0.90761 0.90920 0.92007 0.87805 0.89992 0.86501 0.85611 0.86057 0.93633 0.93232 0.88441 0.88707 0.93597 0.93825 0.74559 0.75270 0.74841 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -65.47 13.06 21.65 0.28 -65.18 16 2 C -0.08 -5.30 5.50 84.86 0.47 -4.84 16 3 Si 0.98 49.32 29.55 68.60 2.03 51.35 16 4 H -0.28 -13.83 7.11 99.48 0.71 -13.12 16 5 H -0.29 -14.73 7.11 99.48 0.71 -14.03 16 6 H -0.26 -12.38 7.11 99.48 0.71 -11.68 16 7 C -0.25 -15.30 9.99 84.04 0.84 -14.46 16 8 H 0.08 4.59 7.83 -2.91 -0.02 4.56 16 9 N -0.75 -44.03 5.60 -343.44 -1.92 -45.95 16 10 C 0.15 6.82 5.74 86.38 0.50 7.32 16 11 C -0.09 -3.73 3.29 30.59 0.10 -3.63 16 12 C 0.16 4.41 3.02 44.97 0.14 4.54 16 13 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 14 C -0.13 -3.06 4.83 30.67 0.15 -2.91 16 15 C -0.12 -1.71 5.88 30.62 0.18 -1.53 16 16 C -0.13 -1.29 6.10 30.82 0.19 -1.10 16 17 C 0.10 1.06 6.38 86.51 0.55 1.62 16 18 N -0.61 -13.43 2.97 -794.22 -2.36 -15.78 16 19 C 0.49 12.78 7.53 87.66 0.66 13.44 16 20 O -0.58 -22.53 11.53 -3.01 -0.03 -22.56 16 21 C -0.12 -1.69 4.06 29.85 0.12 -1.57 16 22 C -0.10 -1.88 4.50 30.59 0.14 -1.75 16 23 C -0.11 -1.04 5.33 30.60 0.16 -0.88 16 24 C 0.13 2.30 5.67 86.38 0.49 2.79 16 25 N -0.73 -9.15 5.56 -478.54 -2.66 -11.81 16 26 C 0.69 13.15 8.84 179.06 1.58 14.73 16 27 N -0.85 -6.97 8.88 -184.75 -1.64 -8.61 16 28 O -0.66 -21.01 17.18 -3.99 -0.07 -21.08 16 29 H 0.25 16.21 8.31 -92.71 -0.77 15.43 16 30 H 0.37 23.70 7.67 -92.70 -0.71 22.99 16 31 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 32 H 0.02 1.01 6.85 -2.39 -0.02 0.99 16 33 H 0.04 1.77 7.24 -2.39 -0.02 1.75 16 34 H 0.06 2.95 6.23 -2.39 -0.01 2.93 16 35 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 36 H 0.07 1.78 6.87 -2.39 -0.02 1.76 16 37 H 0.07 0.97 8.14 -2.38 -0.02 0.95 16 38 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 39 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 40 H 0.10 0.46 8.14 -2.38 -0.02 0.44 16 41 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 42 H 0.12 0.48 5.93 -2.39 -0.01 0.46 16 43 H 0.13 0.85 7.71 -2.39 -0.02 0.84 16 44 H 0.12 0.96 7.93 -2.39 -0.02 0.94 16 45 H 0.04 1.10 8.10 -2.39 -0.02 1.08 16 46 H 0.05 1.15 8.10 -2.39 -0.02 1.13 16 47 H 0.10 0.47 8.14 -2.39 -0.02 0.45 16 48 H 0.09 0.51 8.14 -2.39 -0.02 0.49 16 49 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 50 H 0.04 0.98 8.14 -2.38 -0.02 0.96 16 51 H 0.42 1.48 8.49 -92.71 -0.79 0.69 16 52 H 0.42 0.01 8.84 -92.71 -0.82 -0.81 16 53 H 0.42 3.12 8.93 -92.71 -0.83 2.29 16 Total: -1.00 -96.61 415.03 -2.32 -98.93 By element: Atomic # 1 Polarization: 31.14 SS G_CDS: -2.21 Total: 28.93 kcal Atomic # 6 Polarization: 5.51 SS G_CDS: 6.26 Total: 11.77 kcal Atomic # 7 Polarization: -139.04 SS G_CDS: -8.30 Total: -147.34 kcal Atomic # 8 Polarization: -43.53 SS G_CDS: -0.10 Total: -43.64 kcal Atomic # 14 Polarization: 49.32 SS G_CDS: 2.03 Total: 51.35 kcal Total: -96.61 -2.32 -98.93 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568389490.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.083 kcal (2) G-P(sol) polarization free energy of solvation -96.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -98.933 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds