Wall clock time and date at job start Sat Apr 11 2020 06:11:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 109.47268 * 2 1 4 4 H 1.08999 * 109.47326 * 54.03082 * 3 2 1 5 5 C 1.50700 * 109.47390 * 294.02834 * 3 2 1 6 6 O 1.21279 * 119.99812 * 257.10265 * 5 3 2 7 7 N 1.34774 * 119.99590 * 77.10275 * 5 3 2 8 8 C 1.46504 * 119.99682 * 174.74436 * 7 5 3 9 9 C 1.53004 * 110.35150 * 302.14002 * 8 7 5 10 10 C 1.54594 * 110.31032 * 64.28373 * 8 7 5 11 11 C 1.54938 * 102.92303 * 96.96040 * 10 8 7 12 12 N 1.48530 * 103.22706 * 37.41084 * 11 10 8 13 13 C 1.46902 * 110.99991 * 200.27854 * 12 11 10 14 14 C 1.50692 * 109.47534 * 287.40075 * 13 12 11 15 15 O 1.21294 * 119.99628 * 359.97438 * 14 13 12 16 16 N 1.34771 * 120.00263 * 179.97438 * 14 13 12 17 17 C 1.37095 * 120.00061 * 179.72439 * 16 14 13 18 18 H 1.08003 * 120.00590 * 359.97438 * 17 16 14 19 19 C 1.38955 * 120.00072 * 180.02562 * 17 16 14 20 20 N 1.31418 * 120.00042 * 180.02562 * 19 17 16 21 21 Si 1.86799 * 120.00020 * 359.97438 * 19 17 16 22 22 H 1.48498 * 109.47014 * 90.00334 * 21 19 17 23 23 H 1.48497 * 109.47051 * 210.00384 * 21 19 17 24 24 H 1.48497 * 109.47015 * 330.00160 * 21 19 17 25 25 C 1.47903 * 105.82389 * 320.79517 * 12 11 10 26 26 N 1.46908 * 109.46954 * 174.03038 * 3 2 1 27 27 C 1.46899 * 110.99974 * 286.34059 * 26 3 2 28 28 C 1.46899 * 110.99943 * 50.29486 * 26 3 2 29 29 H 1.08999 * 109.46613 * 306.05364 * 1 2 3 30 30 H 1.09007 * 109.46890 * 66.04676 * 1 2 3 31 31 H 1.08994 * 109.47077 * 186.04562 * 1 2 3 32 32 H 1.09004 * 109.47018 * 240.00017 * 2 1 3 33 33 H 1.08997 * 109.46794 * 120.00266 * 2 1 3 34 34 H 0.96995 * 120.00121 * 354.74282 * 7 5 3 35 35 H 1.08999 * 109.46998 * 297.85612 * 9 8 7 36 36 H 1.08995 * 109.47227 * 57.86299 * 9 8 7 37 37 H 1.08997 * 109.46852 * 177.85802 * 9 8 7 38 38 H 1.08999 * 110.72176 * 215.31505 * 10 8 7 39 39 H 1.08999 * 110.72452 * 338.41787 * 10 8 7 40 40 H 1.09004 * 110.66048 * 278.98182 * 11 10 8 41 41 H 1.08999 * 110.66779 * 155.85302 * 11 10 8 42 42 H 1.09002 * 109.46709 * 167.39799 * 13 12 11 43 43 H 1.09004 * 109.46577 * 47.40461 * 13 12 11 44 44 H 0.97001 * 119.99950 * 0.02562 * 16 14 13 45 45 H 0.96997 * 119.99900 * 179.97438 * 20 19 17 46 46 H 1.09002 * 109.91682 * 144.68128 * 25 12 11 47 47 H 1.08998 * 109.91986 * 265.78064 * 25 12 11 48 48 H 1.09000 * 109.47152 * 65.34713 * 27 26 3 49 49 H 1.08999 * 109.47139 * 185.35187 * 27 26 3 50 50 H 1.09009 * 109.46958 * 305.34961 * 27 26 3 51 51 H 1.08991 * 109.47385 * 59.99666 * 28 26 3 52 52 H 1.09005 * 109.46907 * 180.02562 * 28 26 3 53 53 H 1.09003 * 109.47039 * 299.99612 * 28 26 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5921 1.9862 0.8317 5 6 1.6621 2.1090 -1.2977 6 8 2.4953 2.2632 -2.1653 7 7 0.3981 2.5336 -1.4939 8 6 0.0571 3.2833 -2.7055 9 6 0.9181 4.5437 -2.8114 10 6 0.2483 2.3962 -3.9571 11 6 -1.1834 1.8714 -4.2318 12 7 -2.0421 3.0371 -3.9004 13 6 -3.4238 2.6147 -3.6350 14 6 -4.0857 2.2191 -4.9297 15 8 -3.4674 2.2833 -5.9712 16 7 -5.3647 1.7941 -4.9303 17 6 -5.9686 1.4396 -6.1089 18 1 -5.4197 1.5013 -7.0370 19 6 -7.2874 1.0019 -6.1097 20 7 -7.8662 0.6616 -7.2394 21 14 -8.2372 0.8958 -4.5047 22 1 -8.9265 2.1864 -4.2512 23 1 -9.2428 -0.1931 -4.5957 24 1 -7.2972 0.6096 -3.3913 25 6 -1.4372 3.6556 -2.7008 26 7 3.5020 1.4449 0.1440 27 6 3.8962 1.1058 1.5179 28 6 4.1279 0.5336 -0.8233 29 1 -0.3632 0.6048 0.8308 30 1 -0.3633 0.4173 -0.9392 31 1 -0.3633 -1.0219 0.1082 32 1 1.8934 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 -0.2857 2.3429 -0.8330 35 1 0.7161 5.1942 -1.9605 36 1 1.9717 4.2648 -2.8136 37 1 0.6796 5.0699 -3.7357 38 1 0.6100 2.9881 -4.7978 39 1 0.9301 1.5724 -3.7455 40 1 -1.4145 1.0266 -3.5828 41 1 -1.2974 1.5951 -5.2800 42 1 -3.9750 3.4388 -3.1821 43 1 -3.4190 1.7633 -2.9544 44 1 -5.8592 1.7431 -4.0974 45 1 -8.7867 0.3557 -7.2398 46 1 -1.5501 4.7389 -2.7445 47 1 -1.9165 3.2684 -1.8017 48 1 3.6051 0.0783 1.7363 49 1 4.9765 1.2072 1.6215 50 1 3.3994 1.7802 2.2154 51 1 3.8759 0.8494 -1.8356 52 1 5.2101 0.5544 -0.6946 53 1 3.7620 -0.4797 -0.6572 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001569641708.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:38 Heat of formation + Delta-G solvation = -68.387928 kcal Electronic energy + Delta-G solvation = -31406.991351 eV Core-core repulsion = 27313.356320 eV Total energy + Delta-G solvation = -4093.635031 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.226 amu Computer time = 2.12 seconds Orbital eigenvalues (eV) -41.80643 -40.56117 -39.53586 -37.95435 -36.09216 -35.56761 -34.17551 -33.72631 -32.27308 -30.71343 -29.01803 -28.52953 -28.45309 -26.84123 -25.31444 -24.17346 -23.46667 -22.60669 -21.25863 -20.86034 -20.56198 -20.15192 -18.24950 -17.84132 -17.42115 -16.87226 -16.49188 -16.45623 -16.15589 -16.03476 -15.79784 -15.43590 -15.39114 -15.01506 -14.90483 -14.70743 -14.43566 -14.27465 -14.10880 -13.98010 -13.54386 -13.47135 -13.28964 -13.12434 -12.98138 -12.93436 -12.82554 -12.57098 -12.49117 -12.43357 -12.39650 -12.34713 -12.19375 -11.97621 -11.95185 -11.88626 -11.75844 -11.47509 -10.46032 -10.38756 -10.22510 -10.00674 -9.33121 -9.19417 -8.39525 -6.00428 1.30432 1.37270 1.45755 1.69416 1.99156 2.04369 2.24680 2.68243 3.09521 3.15836 3.24265 3.45263 3.69216 3.73514 3.81774 3.93596 4.03245 4.19588 4.22374 4.24868 4.30671 4.36568 4.40326 4.43860 4.48102 4.50836 4.57189 4.60875 4.72301 4.79355 4.83206 4.84799 4.87525 4.96291 4.99269 5.08490 5.08648 5.11425 5.12237 5.18619 5.30291 5.34162 5.53976 5.59612 5.85802 5.93664 5.95357 6.05238 6.09334 6.61799 6.64277 6.91027 7.36588 7.42359 8.01066 8.78373 Molecular weight = 340.23amu Principal moments of inertia in cm(-1) A = 0.018930 B = 0.002409 C = 0.002273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1478.771338 B =11618.002259 C =12315.631735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.145 4.145 3 C 0.069 3.931 4 H 0.126 0.874 5 C 0.522 3.478 6 O -0.553 6.553 7 N -0.710 5.710 8 C 0.174 3.826 9 C -0.147 4.147 10 C -0.112 4.112 11 C 0.045 3.955 12 N -0.514 5.514 13 C 0.046 3.954 14 C 0.451 3.549 15 O -0.609 6.609 16 N -0.593 5.593 17 C -0.326 4.326 18 H 0.052 0.948 19 C -0.019 4.019 20 N -0.937 5.937 21 Si 0.967 3.033 22 H -0.256 1.256 23 H -0.277 1.277 24 H -0.229 1.229 25 C 0.040 3.960 26 N -0.543 5.543 27 C 0.023 3.977 28 C 0.016 3.984 29 H 0.082 0.918 30 H 0.051 0.949 31 H 0.063 0.937 32 H 0.053 0.947 33 H 0.087 0.913 34 H 0.411 0.589 35 H 0.073 0.927 36 H 0.057 0.943 37 H 0.064 0.936 38 H 0.065 0.935 39 H 0.069 0.931 40 H 0.048 0.952 41 H 0.053 0.947 42 H 0.127 0.873 43 H 0.084 0.916 44 H 0.390 0.610 45 H 0.278 0.722 46 H 0.104 0.896 47 H 0.081 0.919 48 H 0.037 0.963 49 H 0.073 0.927 50 H 0.081 0.919 51 H 0.069 0.931 52 H 0.068 0.932 53 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.885 1.663 27.944 33.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.184 4.184 3 C -0.043 4.043 4 H 0.143 0.857 5 C 0.309 3.691 6 O -0.430 6.430 7 N -0.365 5.365 8 C 0.087 3.913 9 C -0.205 4.205 10 C -0.151 4.151 11 C -0.083 4.083 12 N -0.239 5.239 13 C -0.085 4.085 14 C 0.238 3.762 15 O -0.492 6.492 16 N -0.235 5.235 17 C -0.456 4.456 18 H 0.070 0.930 19 C -0.217 4.217 20 N -0.578 5.578 21 Si 0.787 3.213 22 H -0.181 1.181 23 H -0.202 1.202 24 H -0.152 1.152 25 C -0.087 4.087 26 N -0.266 5.266 27 C -0.125 4.125 28 C -0.132 4.132 29 H 0.101 0.899 30 H 0.070 0.930 31 H 0.082 0.918 32 H 0.072 0.928 33 H 0.105 0.895 34 H 0.250 0.750 35 H 0.092 0.908 36 H 0.076 0.924 37 H 0.083 0.917 38 H 0.084 0.916 39 H 0.088 0.912 40 H 0.066 0.934 41 H 0.071 0.929 42 H 0.144 0.856 43 H 0.102 0.898 44 H 0.225 0.775 45 H 0.088 0.912 46 H 0.122 0.878 47 H 0.099 0.901 48 H 0.055 0.945 49 H 0.092 0.908 50 H 0.099 0.901 51 H 0.087 0.913 52 H 0.086 0.914 53 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges 18.888 2.625 25.994 32.239 hybrid contribution -1.341 -1.858 0.633 2.377 sum 17.547 0.768 26.627 31.898 Atomic orbital electron populations 1.21926 0.93929 1.03360 1.02612 1.22050 0.97920 0.95495 1.02937 1.21834 0.89854 0.96614 0.95952 0.85662 1.20817 0.81714 0.77550 0.89019 1.90618 1.50369 1.56233 1.45799 1.46291 1.10652 1.56794 1.22812 1.20952 0.94453 0.91552 0.84327 1.22053 1.00213 0.95578 1.02672 1.22712 0.95123 0.99576 0.97692 1.23125 0.92537 0.91998 1.00604 1.64399 1.00416 1.25937 1.33125 1.22056 0.90839 1.02577 0.93074 1.20940 0.81966 0.81270 0.91980 1.90550 1.64703 1.57936 1.36024 1.42012 1.12121 1.61056 1.08324 1.18974 0.96592 1.42957 0.87029 0.92994 1.26166 0.97117 0.95926 1.02495 1.69819 1.14331 1.44820 1.28827 0.85332 0.78901 0.79340 0.77712 1.18070 1.20232 1.15168 1.23262 0.91369 1.01894 0.92188 1.61868 1.06022 1.52826 1.05894 1.22504 1.02151 0.99957 0.87854 1.22567 0.99433 0.93713 0.97460 0.89932 0.93028 0.91824 0.92818 0.89477 0.75033 0.90826 0.92390 0.91670 0.91587 0.91201 0.93432 0.92872 0.85563 0.89788 0.77466 0.91227 0.87799 0.90073 0.94492 0.90840 0.90060 0.91253 0.91356 0.94946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.45 8.82 71.98 0.63 -0.81 16 2 C -0.14 -1.63 4.41 30.59 0.13 -1.50 16 3 C 0.07 0.92 2.19 44.17 0.10 1.02 16 4 H 0.13 1.06 7.92 -2.39 -0.02 1.04 16 5 C 0.52 9.92 5.92 87.66 0.52 10.44 16 6 O -0.55 -14.95 10.89 -3.03 -0.03 -14.98 16 7 N -0.71 -10.92 4.23 -418.94 -1.77 -12.69 16 8 C 0.17 3.49 0.94 4.48 0.00 3.50 16 9 C -0.15 -3.00 8.15 71.98 0.59 -2.42 16 10 C -0.11 -3.03 5.82 31.80 0.19 -2.84 16 11 C 0.05 1.40 5.93 86.65 0.51 1.91 16 12 N -0.51 -14.98 4.90 -887.56 -4.35 -19.34 16 13 C 0.05 1.33 5.19 85.55 0.44 1.77 16 14 C 0.45 20.20 7.61 87.66 0.67 20.87 16 15 O -0.61 -34.13 14.64 -3.07 -0.04 -34.17 16 16 N -0.59 -27.62 5.09 -306.99 -1.56 -29.18 16 17 C -0.33 -19.14 10.16 84.04 0.85 -18.29 16 18 H 0.05 3.66 7.39 -2.91 -0.02 3.64 16 19 C -0.02 -1.05 5.50 84.93 0.47 -0.58 16 20 N -0.94 -56.77 13.96 21.67 0.30 -56.47 16 21 Si 0.97 38.18 27.73 68.60 1.90 40.09 16 22 H -0.26 -9.55 7.11 99.48 0.71 -8.85 16 23 H -0.28 -10.93 7.11 99.48 0.71 -10.22 16 24 H -0.23 -7.41 6.52 99.48 0.65 -6.76 16 25 C 0.04 0.76 6.12 86.45 0.53 1.29 16 26 N -0.54 -8.59 4.78 -927.71 -4.43 -13.02 16 27 C 0.02 0.22 9.34 127.69 1.19 1.42 16 28 C 0.02 0.29 8.61 127.69 1.10 1.39 16 29 H 0.08 0.37 8.14 -2.39 -0.02 0.35 16 30 H 0.05 0.60 6.14 -2.38 -0.01 0.58 16 31 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 32 H 0.05 0.84 6.70 -2.38 -0.02 0.82 16 33 H 0.09 0.77 6.74 -2.39 -0.02 0.76 16 34 H 0.41 3.92 6.33 -92.71 -0.59 3.34 16 35 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 36 H 0.06 1.45 6.22 -2.39 -0.01 1.43 16 37 H 0.06 1.40 8.11 -2.39 -0.02 1.38 16 38 H 0.07 1.98 7.84 -2.39 -0.02 1.96 16 39 H 0.07 1.99 6.65 -2.39 -0.02 1.98 16 40 H 0.05 1.34 7.81 -2.39 -0.02 1.32 16 41 H 0.05 2.14 7.10 -2.39 -0.02 2.12 16 42 H 0.13 2.83 8.08 -2.39 -0.02 2.81 16 43 H 0.08 1.93 7.83 -2.38 -0.02 1.91 16 44 H 0.39 14.73 5.77 -92.71 -0.53 14.20 16 45 H 0.28 15.39 8.31 -92.71 -0.77 14.62 16 46 H 0.10 1.79 7.68 -2.39 -0.02 1.77 16 47 H 0.08 1.01 7.10 -2.39 -0.02 0.99 16 48 H 0.04 0.30 6.88 -2.39 -0.02 0.28 16 49 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 50 H 0.08 0.58 7.99 -2.38 -0.02 0.56 16 51 H 0.07 1.65 5.66 -2.39 -0.01 1.63 16 52 H 0.07 1.10 8.14 -2.38 -0.02 1.08 16 53 H 0.03 0.50 6.33 -2.39 -0.02 0.49 16 Total: -1.00 -82.61 398.98 -2.32 -84.93 By element: Atomic # 1 Polarization: 37.93 SS G_CDS: -0.26 Total: 37.68 kcal Atomic # 6 Polarization: 9.23 SS G_CDS: 7.93 Total: 17.16 kcal Atomic # 7 Polarization: -118.89 SS G_CDS: -11.82 Total: -130.70 kcal Atomic # 8 Polarization: -49.08 SS G_CDS: -0.08 Total: -49.15 kcal Atomic # 14 Polarization: 38.18 SS G_CDS: 1.90 Total: 40.09 kcal Total: -82.61 -2.32 -84.93 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569641708.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.538 kcal (2) G-P(sol) polarization free energy of solvation -82.609 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.926 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.388 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.12 seconds