Wall clock time and date at job start Sat Apr 11 2020 06:11:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.46949 * 2 1 4 4 C 1.52997 * 109.47218 * 179.97438 * 3 2 1 5 5 C 1.53000 * 109.47059 * 179.97438 * 4 3 2 6 6 H 1.08996 * 109.47498 * 304.99645 * 5 4 3 7 7 N 1.46498 * 109.47249 * 65.00185 * 5 4 3 8 8 C 1.34774 * 120.00211 * 59.99599 * 7 5 4 9 9 N 1.34777 * 120.00311 * 180.02562 * 8 7 5 10 10 O 1.21586 * 120.00048 * 0.02562 * 8 7 5 11 11 C 1.50708 * 109.46943 * 184.99884 * 5 4 3 12 12 O 1.21283 * 119.99923 * 260.00113 * 11 5 4 13 13 N 1.34772 * 120.00005 * 79.99926 * 11 5 4 14 14 C 1.48118 * 127.03581 * 359.68666 * 13 11 5 15 15 C 1.54593 * 103.42579 * 219.28478 * 14 13 11 16 16 C 1.54614 * 102.91066 * 322.86835 * 15 14 13 17 17 C 1.53004 * 110.32712 * 262.80505 * 16 15 14 18 18 C 1.52996 * 110.33031 * 140.58942 * 16 15 14 19 19 N 1.46504 * 109.47238 * 64.37742 * 18 16 15 20 20 C 1.36937 * 120.00201 * 179.97438 * 19 18 16 21 21 H 1.07997 * 119.99633 * 0.02562 * 20 19 18 22 22 C 1.38807 * 119.99771 * 179.97438 * 20 19 18 23 23 N 1.31624 * 120.00160 * 180.02562 * 22 20 19 24 24 Si 1.86801 * 120.00365 * 0.02562 * 22 20 19 25 25 H 1.48498 * 109.47166 * 89.99473 * 24 22 20 26 26 H 1.48500 * 109.47447 * 209.99711 * 24 22 20 27 27 H 1.48498 * 109.46891 * 329.99715 * 24 22 20 28 28 C 1.47487 * 127.03510 * 179.97438 * 13 11 5 29 29 H 1.09006 * 109.46708 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47546 * 300.00156 * 1 2 3 31 31 H 1.09001 * 109.46940 * 60.00967 * 1 2 3 32 32 H 1.08993 * 109.47354 * 239.99126 * 2 1 3 33 33 H 1.09001 * 109.46480 * 119.99300 * 2 1 3 34 34 H 1.09006 * 109.47244 * 59.99386 * 3 2 1 35 35 H 1.09002 * 109.46780 * 299.99771 * 3 2 1 36 36 H 1.08997 * 109.47251 * 59.99860 * 4 3 2 37 37 H 1.09002 * 109.47218 * 299.99699 * 4 3 2 38 38 H 0.97004 * 119.99747 * 240.00248 * 7 5 4 39 39 H 0.97001 * 120.00485 * 180.02562 * 9 8 7 40 40 H 0.97005 * 119.99790 * 359.72197 * 9 8 7 41 41 H 1.09011 * 110.65782 * 337.77070 * 14 13 11 42 42 H 1.09004 * 110.66503 * 100.87953 * 14 13 11 43 43 H 1.08993 * 110.83607 * 204.44560 * 15 14 13 44 44 H 1.09007 * 110.72688 * 81.23645 * 15 14 13 45 45 H 1.08990 * 109.47518 * 175.62021 * 17 16 15 46 46 H 1.09002 * 109.47133 * 295.62519 * 17 16 15 47 47 H 1.09005 * 109.46679 * 55.61602 * 17 16 15 48 48 H 1.09001 * 109.47639 * 184.37675 * 18 16 15 49 49 H 1.09003 * 109.47076 * 304.37780 * 18 16 15 50 50 H 0.97001 * 119.99547 * 359.97438 * 19 18 16 51 51 H 0.96996 * 120.00294 * 180.02562 * 23 22 20 52 52 H 1.08998 * 109.90990 * 273.87901 * 28 13 11 53 53 H 1.08998 * 109.91236 * 34.96368 * 28 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5699 1.4426 0.0006 5 6 4.0799 2.8851 0.0000 6 1 3.6457 3.4236 -0.8423 7 7 3.6918 3.5408 1.2512 8 6 4.1158 3.0461 2.4310 9 7 3.7584 3.6490 3.5822 10 8 4.8208 2.0558 2.4569 11 6 5.5819 2.8869 -0.1232 12 8 6.2710 3.0404 0.8630 13 7 6.1593 2.7177 -1.3291 14 6 5.4734 2.5121 -2.6257 15 6 6.3557 1.4597 -3.3356 16 6 7.7863 1.8669 -2.9136 17 6 8.4400 2.7185 -4.0038 18 6 8.6314 0.6232 -2.6309 19 7 8.7933 -0.1482 -3.8659 20 6 9.5178 -1.3102 -3.8574 21 1 9.9695 -1.6581 -2.9402 22 6 9.6707 -2.0413 -5.0274 23 7 10.3667 -3.1584 -5.0192 24 14 8.8888 -1.4398 -6.6136 25 1 9.8434 -0.5586 -7.3330 26 1 8.5480 -2.6040 -7.4701 27 1 7.6533 -0.6784 -6.2988 28 6 7.6036 2.6937 -1.6270 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5137 -0.8901 32 1 1.8934 -0.5139 -0.8898 33 1 1.8932 -0.5137 0.8901 34 1 1.6765 1.9564 0.8900 35 1 1.6766 1.9563 -0.8900 36 1 3.9337 0.9286 -0.8891 37 1 3.9329 0.9289 0.8909 38 1 3.1296 4.3310 1.2306 39 1 4.0638 3.2932 4.4313 40 1 3.1992 4.4414 3.5614 41 1 4.4656 2.1267 -2.4708 42 1 5.4478 3.4391 -3.1986 43 1 6.2397 1.5228 -4.4175 44 1 6.1196 0.4562 -2.9813 45 1 9.4156 3.0621 -3.6603 46 1 8.5625 2.1208 -4.9070 47 1 7.8072 3.5791 -4.2207 48 1 9.6108 0.9258 -2.2606 49 1 8.1335 0.0083 -1.8811 50 1 8.3872 0.1642 -4.6895 51 1 10.4739 -3.6691 -5.8368 52 1 7.9673 3.7092 -1.7832 53 1 8.1448 2.2283 -0.8032 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001569696153.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:55 Heat of formation + Delta-G solvation = -89.755037 kcal Electronic energy + Delta-G solvation = -31513.130660 eV Core-core repulsion = 27418.569082 eV Total energy + Delta-G solvation = -4094.561578 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.226 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.77818 -40.60977 -39.03634 -37.18281 -36.59349 -35.19362 -34.48003 -34.29996 -32.63960 -31.35128 -30.55458 -28.55556 -27.86377 -26.54389 -24.44525 -23.84263 -23.66693 -22.44955 -21.60738 -20.49442 -20.06895 -19.64329 -19.41940 -18.15324 -17.69721 -17.14828 -16.79543 -16.48346 -16.32564 -15.98755 -15.55023 -15.39561 -15.33326 -15.10037 -15.07199 -14.91454 -14.54459 -14.34410 -14.22611 -13.87300 -13.56707 -13.46335 -13.41844 -13.19749 -12.97801 -12.81687 -12.72310 -12.59660 -12.20346 -12.15694 -12.01262 -11.95343 -11.77189 -11.71265 -11.54270 -11.45947 -11.40961 -11.23213 -10.98787 -10.83892 -10.47015 -9.89305 -9.64530 -9.31952 -8.03252 -5.38019 1.36571 1.43514 1.50728 1.61757 1.76224 2.18958 2.46446 2.49099 3.26361 3.31415 3.58028 3.64441 3.68292 3.75738 3.88555 3.97728 4.00973 4.15824 4.24275 4.26515 4.31011 4.42101 4.43066 4.52168 4.65607 4.71597 4.77828 4.81504 4.87892 4.88091 4.92345 4.99656 5.00797 5.03494 5.08640 5.21018 5.24302 5.25648 5.33037 5.34586 5.39574 5.50707 5.52018 5.55574 5.73207 5.98066 6.10732 6.19847 6.60971 7.06959 7.21282 7.23796 7.80023 7.86155 8.05237 9.18888 Molecular weight = 340.23amu Principal moments of inertia in cm(-1) A = 0.012419 B = 0.002919 C = 0.002641 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2254.153619 B = 9589.392420 C =10597.949058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.130 4.130 3 C -0.099 4.099 4 C -0.132 4.132 5 C 0.167 3.833 6 H 0.157 0.843 7 N -0.718 5.718 8 C 0.699 3.301 9 N -0.854 5.854 10 O -0.621 6.621 11 C 0.506 3.494 12 O -0.563 6.563 13 N -0.621 5.621 14 C 0.102 3.898 15 C -0.125 4.125 16 C -0.075 4.075 17 C -0.129 4.129 18 C 0.171 3.829 19 N -0.745 5.745 20 C -0.241 4.241 21 H 0.043 0.957 22 C -0.067 4.067 23 N -0.988 5.988 24 Si 0.960 3.040 25 H -0.274 1.274 26 H -0.296 1.296 27 H -0.240 1.240 28 C 0.123 3.877 29 H 0.050 0.950 30 H 0.055 0.945 31 H 0.067 0.933 32 H 0.059 0.941 33 H 0.038 0.962 34 H 0.064 0.936 35 H 0.092 0.908 36 H 0.074 0.926 37 H 0.051 0.949 38 H 0.420 0.580 39 H 0.415 0.585 40 H 0.412 0.588 41 H 0.106 0.894 42 H 0.110 0.890 43 H 0.099 0.901 44 H 0.054 0.946 45 H 0.054 0.946 46 H 0.051 0.949 47 H 0.089 0.911 48 H 0.014 0.986 49 H 0.003 0.997 50 H 0.371 0.629 51 H 0.259 0.741 52 H 0.085 0.915 53 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.503 22.990 7.491 35.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.168 4.168 3 C -0.136 4.136 4 C -0.171 4.171 5 C 0.057 3.943 6 H 0.174 0.826 7 N -0.376 5.376 8 C 0.398 3.602 9 N -0.424 5.424 10 O -0.500 6.500 11 C 0.294 3.706 12 O -0.441 6.441 13 N -0.356 5.356 14 C -0.019 4.019 15 C -0.164 4.164 16 C -0.076 4.076 17 C -0.186 4.186 18 C 0.044 3.956 19 N -0.392 5.392 20 C -0.371 4.371 21 H 0.061 0.939 22 C -0.258 4.258 23 N -0.638 5.638 24 Si 0.786 3.214 25 H -0.200 1.200 26 H -0.222 1.222 27 H -0.164 1.164 28 C 0.000 4.000 29 H 0.069 0.931 30 H 0.074 0.926 31 H 0.086 0.914 32 H 0.078 0.922 33 H 0.057 0.943 34 H 0.083 0.917 35 H 0.110 0.890 36 H 0.092 0.908 37 H 0.069 0.931 38 H 0.258 0.742 39 H 0.247 0.753 40 H 0.243 0.757 41 H 0.124 0.876 42 H 0.128 0.872 43 H 0.118 0.882 44 H 0.073 0.927 45 H 0.073 0.927 46 H 0.070 0.930 47 H 0.108 0.892 48 H 0.032 0.968 49 H 0.021 0.979 50 H 0.206 0.794 51 H 0.067 0.933 52 H 0.103 0.897 53 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -25.501 22.123 8.099 34.718 hybrid contribution 0.500 -0.348 -0.041 0.610 sum -25.001 21.775 8.058 34.119 Atomic orbital electron populations 1.21730 0.94553 1.01762 1.02376 1.21541 0.96858 0.97220 1.01185 1.21474 0.91998 0.96804 1.03325 1.21953 0.97966 0.94238 1.02930 1.20759 0.88655 0.96615 0.88231 0.82580 1.44499 1.56258 1.33806 1.03058 1.16220 0.79241 0.82796 0.81982 1.42779 1.58450 1.34438 1.06700 1.90976 1.42589 1.29699 1.86743 1.21433 0.92255 0.75973 0.80929 1.90743 1.65934 1.50082 1.37292 1.48925 1.07501 1.71599 1.07569 1.22832 0.97074 0.99824 0.82192 1.22763 0.92666 0.98931 1.01990 1.21572 0.96378 0.94188 0.95451 1.21805 1.00748 0.99301 0.96782 1.20728 0.96164 0.90901 0.87780 1.42533 1.63391 1.25431 1.07808 1.18993 1.23918 0.98783 0.95451 0.93850 1.25628 1.01227 0.97098 1.01818 1.69919 1.47140 1.18166 1.28581 0.85336 0.79672 0.77578 0.78818 1.19985 1.22240 1.16358 1.21925 0.82453 0.99992 0.95673 0.93106 0.92570 0.91402 0.92196 0.94260 0.91727 0.88978 0.90778 0.93052 0.74220 0.75293 0.75714 0.87553 0.87178 0.88217 0.92674 0.92701 0.93026 0.89180 0.96784 0.97928 0.79353 0.93251 0.89667 0.94134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.73 9.91 71.98 0.71 -1.02 16 2 C -0.13 -2.03 5.93 30.59 0.18 -1.84 16 3 C -0.10 -1.25 5.10 30.59 0.16 -1.09 16 4 C -0.13 -2.58 4.37 30.59 0.13 -2.45 16 5 C 0.17 2.85 2.24 44.25 0.10 2.95 16 6 H 0.16 1.09 7.57 -2.39 -0.02 1.07 16 7 N -0.72 -10.87 4.66 -461.41 -2.15 -13.02 16 8 C 0.70 16.31 7.59 179.05 1.36 17.67 16 9 N -0.85 -11.60 8.88 -184.75 -1.64 -13.24 16 10 O -0.62 -22.68 13.03 18.48 0.24 -22.44 16 11 C 0.51 14.02 6.88 87.66 0.60 14.62 16 12 O -0.56 -21.90 14.01 19.42 0.27 -21.63 16 13 N -0.62 -15.06 3.29 -810.02 -2.67 -17.73 16 14 C 0.10 1.60 6.67 86.61 0.58 2.17 16 15 C -0.13 -2.95 5.72 31.69 0.18 -2.76 16 16 C -0.07 -2.13 0.67 -51.29 -0.03 -2.17 16 17 C -0.13 -3.12 8.05 71.98 0.58 -2.54 16 18 C 0.17 7.02 4.85 86.38 0.42 7.44 16 19 N -0.74 -35.30 4.92 -343.45 -1.69 -37.00 16 20 C -0.24 -14.31 10.47 84.03 0.88 -13.43 16 21 H 0.04 2.91 8.06 -2.91 -0.02 2.88 16 22 C -0.07 -4.01 5.50 84.86 0.47 -3.54 16 23 N -0.99 -65.00 13.97 21.65 0.30 -64.69 16 24 Si 0.96 44.71 27.74 68.60 1.90 46.61 16 25 H -0.27 -12.30 7.11 99.48 0.71 -11.60 16 26 H -0.30 -13.97 7.11 99.48 0.71 -13.27 16 27 H -0.24 -9.59 6.52 99.48 0.65 -8.94 16 28 C 0.12 3.47 6.28 86.54 0.54 4.01 16 29 H 0.05 0.62 8.14 -2.38 -0.02 0.61 16 30 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 31 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 32 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 33 H 0.04 0.77 8.14 -2.39 -0.02 0.75 16 34 H 0.06 0.80 7.75 -2.38 -0.02 0.78 16 35 H 0.09 0.64 8.14 -2.39 -0.02 0.62 16 36 H 0.07 1.46 6.95 -2.39 -0.02 1.44 16 37 H 0.05 1.53 6.04 -2.39 -0.01 1.51 16 38 H 0.42 2.44 8.84 -92.71 -0.82 1.62 16 39 H 0.42 5.61 8.93 -92.71 -0.83 4.78 16 40 H 0.41 2.03 8.84 -92.70 -0.82 1.21 16 41 H 0.11 1.13 5.99 -2.38 -0.01 1.11 16 42 H 0.11 1.03 8.14 -2.38 -0.02 1.01 16 43 H 0.10 2.01 7.85 -2.39 -0.02 1.99 16 44 H 0.05 1.61 7.84 -2.38 -0.02 1.59 16 45 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 46 H 0.05 1.40 6.75 -2.39 -0.02 1.38 16 47 H 0.09 1.50 8.14 -2.38 -0.02 1.48 16 48 H 0.01 0.62 8.14 -2.39 -0.02 0.60 16 49 H 0.00 0.12 8.11 -2.39 -0.02 0.10 16 50 H 0.37 15.97 4.04 -92.71 -0.37 15.60 16 51 H 0.26 16.09 8.31 -92.71 -0.77 15.31 16 52 H 0.09 2.06 7.68 -2.39 -0.02 2.04 16 53 H 0.04 1.44 7.60 -2.39 -0.02 1.42 16 Total: -1.00 -93.95 410.07 -0.53 -94.48 By element: Atomic # 1 Polarization: 32.57 SS G_CDS: -1.96 Total: 30.61 kcal Atomic # 6 Polarization: 11.17 SS G_CDS: 6.86 Total: 18.03 kcal Atomic # 7 Polarization: -137.82 SS G_CDS: -7.84 Total: -145.67 kcal Atomic # 8 Polarization: -44.58 SS G_CDS: 0.51 Total: -44.07 kcal Atomic # 14 Polarization: 44.71 SS G_CDS: 1.90 Total: 46.61 kcal Total: -93.95 -0.53 -94.48 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569696153.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.729 kcal (2) G-P(sol) polarization free energy of solvation -93.955 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.226 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.529 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -94.484 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.755 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds