Wall clock time and date at job start Sat Apr 11 2020 06:12:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.47208 * 2 1 4 4 C 1.53004 * 109.46788 * 179.97438 * 3 2 1 5 5 C 1.53002 * 109.46788 * 179.97438 * 4 3 2 6 6 H 1.09000 * 109.47242 * 55.00016 * 5 4 3 7 7 N 1.46503 * 109.47111 * 295.00434 * 5 4 3 8 8 C 1.34776 * 120.00013 * 299.99612 * 7 5 4 9 9 N 1.34772 * 120.00157 * 180.02562 * 8 7 5 10 10 O 1.21590 * 119.99979 * 0.02562 * 8 7 5 11 11 C 1.50694 * 109.47070 * 175.00301 * 5 4 3 12 12 O 1.21283 * 120.00363 * 99.99964 * 11 5 4 13 13 N 1.34784 * 119.99988 * 280.00082 * 11 5 4 14 14 C 1.46493 * 119.99864 * 179.72721 * 13 11 5 15 15 H 1.09002 * 110.64784 * 31.85762 * 14 13 11 16 16 C 1.54325 * 110.71930 * 268.51935 * 14 13 11 17 17 N 1.47027 * 107.27382 * 263.83247 * 16 14 13 18 18 C 1.36927 * 125.64932 * 181.01358 * 17 16 14 19 19 H 1.08000 * 119.99817 * 180.02562 * 18 17 16 20 20 C 1.38817 * 120.00209 * 0.05234 * 18 17 16 21 21 N 1.31617 * 119.99618 * 359.97438 * 20 18 17 22 22 Si 1.86804 * 119.99956 * 180.02562 * 20 18 17 23 23 H 1.48496 * 109.47050 * 359.97438 * 22 20 18 24 24 H 1.48499 * 109.47124 * 120.00223 * 22 20 18 25 25 H 1.48506 * 109.46788 * 239.99592 * 22 20 18 26 26 C 1.47426 * 108.70082 * 1.05917 * 17 16 14 27 27 C 1.54917 * 104.83089 * 335.87136 * 26 17 16 28 28 C 1.53002 * 111.00371 * 278.93602 * 27 26 17 29 29 C 1.52997 * 111.03575 * 155.10304 * 27 26 17 30 30 H 1.09007 * 109.46732 * 59.99881 * 1 2 3 31 31 H 1.09002 * 109.47073 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47091 * 300.00295 * 1 2 3 33 33 H 1.09003 * 109.47485 * 239.99850 * 2 1 3 34 34 H 1.08997 * 109.47193 * 120.00391 * 2 1 3 35 35 H 1.08996 * 109.46833 * 60.00436 * 3 2 1 36 36 H 1.08994 * 109.47098 * 299.99568 * 3 2 1 37 37 H 1.08996 * 109.46833 * 60.00735 * 4 3 2 38 38 H 1.08994 * 109.47192 * 299.99809 * 4 3 2 39 39 H 0.96998 * 120.00224 * 120.00479 * 7 5 4 40 40 H 0.96990 * 120.00140 * 0.02562 * 9 8 7 41 41 H 0.97004 * 119.99780 * 179.97438 * 9 8 7 42 42 H 0.97000 * 119.99339 * 0.02562 * 13 11 5 43 43 H 1.09000 * 109.88443 * 23.25056 * 16 14 13 44 44 H 1.09003 * 109.88136 * 144.41192 * 16 14 13 45 45 H 0.97003 * 119.99214 * 180.02562 * 21 20 18 46 46 H 1.09001 * 110.36689 * 217.03629 * 26 17 16 47 47 H 1.08993 * 110.46077 * 94.75436 * 26 17 16 48 48 H 1.09003 * 109.47140 * 172.19639 * 28 27 26 49 49 H 1.08998 * 109.46814 * 292.19867 * 28 27 26 50 50 H 1.09000 * 109.47234 * 52.19849 * 28 27 26 51 51 H 1.09002 * 109.46985 * 307.78211 * 29 27 26 52 52 H 1.08995 * 109.47801 * 67.78158 * 29 27 26 53 53 H 1.09005 * 109.47084 * 187.78525 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5701 1.4424 0.0006 5 6 4.0801 2.8849 0.0000 6 1 3.6452 3.4245 0.8413 7 7 3.6930 3.5392 -1.2523 8 6 4.1180 3.0431 -2.4312 9 7 3.7623 3.6453 -3.5833 10 8 4.8223 2.0523 -2.4554 11 6 5.5819 2.8867 0.1244 12 8 6.2719 3.0391 -0.8613 13 7 6.1584 2.7190 1.3311 14 6 7.6184 2.7148 1.4511 15 1 8.0673 3.3697 0.7043 16 6 8.1722 1.2796 1.3281 17 7 8.3551 0.7637 2.6926 18 6 8.8478 -0.4713 3.0195 19 1 8.9435 -0.7573 4.0566 20 6 9.2248 -1.3555 2.0180 21 7 9.1082 -1.0069 0.7542 22 14 9.8963 -3.0407 2.4641 23 1 9.9263 -3.1864 3.9415 24 1 9.0244 -4.0914 1.8801 25 1 11.2727 -3.1836 1.9249 26 6 7.9191 1.7960 3.6506 27 6 8.0529 3.1335 2.8806 28 6 9.5002 3.6297 2.8906 29 6 7.1090 4.1932 3.4524 30 1 -0.3633 0.5139 -0.8901 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5139 0.8899 33 1 1.8934 -0.5139 -0.8900 34 1 1.8933 -0.5139 0.8899 35 1 1.6768 1.9563 0.8900 36 1 1.6768 1.9563 -0.8900 37 1 3.9337 0.9285 -0.8892 38 1 3.9330 0.9287 0.8908 39 1 3.1309 4.3295 -1.2331 40 1 3.2008 4.4359 -3.5640 41 1 4.0685 3.2884 -4.4317 42 1 5.6065 2.5967 2.1194 43 1 7.4627 0.6536 0.7871 44 1 9.1291 1.2951 0.8062 45 1 9.3713 -1.6250 0.0545 46 1 8.5661 1.7970 4.5278 47 1 6.8828 1.6296 3.9446 48 1 9.5933 4.4920 2.2304 49 1 9.7788 3.9166 3.9046 50 1 10.1595 2.8339 2.5440 51 1 6.0968 3.7914 3.4984 52 1 7.4365 4.4687 4.4548 53 1 7.1212 5.0746 2.8112 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001570910148.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:12:41 Heat of formation + Delta-G solvation = -83.316037 kcal Electronic energy + Delta-G solvation = -32244.263824 eV Core-core repulsion = 28149.981462 eV Total energy + Delta-G solvation = -4094.282362 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.226 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.67686 -40.56975 -39.09563 -37.12869 -35.65407 -35.16340 -34.42984 -34.32851 -32.60224 -31.39455 -29.88805 -28.22582 -27.59933 -27.18552 -25.09104 -23.76731 -22.88117 -22.04111 -21.66646 -20.91834 -20.03812 -19.53188 -18.68405 -18.35290 -17.66134 -17.19760 -16.71927 -16.49016 -15.95224 -15.79792 -15.60122 -15.53795 -15.14086 -15.08941 -14.92874 -14.73019 -14.30939 -14.11420 -13.79854 -13.72234 -13.48645 -13.42152 -13.14368 -12.94404 -12.82173 -12.74747 -12.70398 -12.54986 -12.20180 -12.06929 -12.00023 -11.84780 -11.76225 -11.71122 -11.48831 -11.46086 -11.28951 -11.19463 -10.80532 -10.74911 -10.43742 -9.85532 -9.80973 -8.88929 -7.83123 -5.20503 1.41276 1.43308 1.53795 1.74144 1.92825 2.33490 2.48190 2.59808 3.35081 3.52896 3.70225 3.73555 3.78876 3.94059 4.00167 4.03404 4.11514 4.17339 4.27759 4.43579 4.43917 4.54017 4.56700 4.73275 4.82864 4.86944 4.88097 4.92288 4.98303 5.01045 5.04490 5.09304 5.16892 5.19683 5.24595 5.33730 5.35930 5.38773 5.41208 5.46496 5.51893 5.55498 5.59897 5.74466 5.82694 6.03334 6.13096 6.17495 6.73569 7.07644 7.27362 7.47926 7.78858 7.92292 8.43148 9.25842 Molecular weight = 340.23amu Principal moments of inertia in cm(-1) A = 0.009167 B = 0.003845 C = 0.003356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3053.764905 B = 7280.224193 C = 8340.573213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.132 4.132 3 C -0.096 4.096 4 C -0.131 4.131 5 C 0.166 3.834 6 H 0.163 0.837 7 N -0.714 5.714 8 C 0.697 3.303 9 N -0.853 5.853 10 O -0.621 6.621 11 C 0.487 3.513 12 O -0.561 6.561 13 N -0.700 5.700 14 C 0.142 3.858 15 H 0.068 0.932 16 C 0.196 3.804 17 N -0.620 5.620 18 C -0.234 4.234 19 H 0.090 0.910 20 C -0.073 4.073 21 N -0.956 5.956 22 Si 0.976 3.024 23 H -0.256 1.256 24 H -0.298 1.298 25 H -0.296 1.296 26 C 0.139 3.861 27 C -0.074 4.074 28 C -0.124 4.124 29 C -0.120 4.120 30 H 0.057 0.943 31 H 0.051 0.949 32 H 0.069 0.931 33 H 0.035 0.965 34 H 0.055 0.945 35 H 0.093 0.907 36 H 0.067 0.933 37 H 0.045 0.955 38 H 0.064 0.936 39 H 0.420 0.580 40 H 0.412 0.588 41 H 0.414 0.586 42 H 0.409 0.591 43 H -0.007 1.007 44 H -0.005 1.005 45 H 0.240 0.760 46 H 0.048 0.952 47 H 0.035 0.965 48 H 0.062 0.938 49 H 0.080 0.920 50 H 0.025 0.975 51 H 0.069 0.931 52 H 0.077 0.923 53 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.162 16.874 2.414 26.402 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.170 4.170 3 C -0.133 4.133 4 C -0.171 4.171 5 C 0.056 3.944 6 H 0.180 0.820 7 N -0.373 5.373 8 C 0.395 3.605 9 N -0.423 5.423 10 O -0.500 6.500 11 C 0.272 3.728 12 O -0.438 6.438 13 N -0.353 5.353 14 C 0.036 3.964 15 H 0.086 0.914 16 C 0.070 3.930 17 N -0.346 5.346 18 C -0.363 4.363 19 H 0.108 0.892 20 C -0.265 4.265 21 N -0.605 5.605 22 Si 0.805 3.195 23 H -0.180 1.180 24 H -0.225 1.225 25 H -0.223 1.223 26 C 0.014 3.986 27 C -0.076 4.076 28 C -0.182 4.182 29 C -0.178 4.178 30 H 0.076 0.924 31 H 0.070 0.930 32 H 0.088 0.912 33 H 0.054 0.946 34 H 0.074 0.926 35 H 0.112 0.888 36 H 0.085 0.915 37 H 0.064 0.936 38 H 0.083 0.917 39 H 0.258 0.742 40 H 0.243 0.757 41 H 0.246 0.754 42 H 0.246 0.754 43 H 0.012 0.988 44 H 0.013 0.987 45 H 0.050 0.950 46 H 0.066 0.934 47 H 0.053 0.947 48 H 0.081 0.919 49 H 0.099 0.901 50 H 0.044 0.956 51 H 0.088 0.912 52 H 0.096 0.904 53 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -19.029 15.995 1.782 24.922 hybrid contribution 0.664 -1.292 -0.772 1.645 sum -18.365 14.703 1.010 23.547 Atomic orbital electron populations 1.21714 0.94082 1.01829 1.02505 1.21554 0.97185 0.97294 1.00920 1.21457 0.91679 0.96756 1.03395 1.21912 0.98165 0.94586 1.02393 1.20762 0.88895 0.96270 0.88455 0.82002 1.44421 1.56241 1.33705 1.02919 1.16269 0.79282 0.82841 0.82103 1.42739 1.58425 1.34566 1.06585 1.91027 1.42467 1.29764 1.86703 1.21770 0.92501 0.75851 0.82643 1.90734 1.65906 1.49306 1.37845 1.45780 1.06539 1.73392 1.09616 1.21922 0.80863 0.95843 0.97798 0.91422 1.21018 0.95401 0.90429 0.86181 1.44693 1.74702 1.13469 1.01703 1.19544 1.33591 0.90283 0.92847 0.89203 1.25716 1.02999 1.02604 0.95198 1.70296 1.54915 1.36096 0.99228 0.85035 0.76886 0.79417 0.78203 1.17979 1.22513 1.22334 1.21909 0.97410 0.86906 0.92378 1.21994 0.97295 0.95793 0.92483 1.21600 0.94069 0.99831 1.02699 1.21624 0.98168 0.96627 1.01350 0.92400 0.93006 0.91232 0.94573 0.92573 0.88819 0.91476 0.93643 0.91687 0.74167 0.75692 0.75407 0.75422 0.98849 0.98707 0.95049 0.93378 0.94687 0.91875 0.90115 0.95605 0.91240 0.90405 0.91781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.20 9.91 71.98 0.71 -1.49 16 2 C -0.13 -2.74 5.93 30.60 0.18 -2.56 16 3 C -0.10 -1.73 5.10 30.60 0.16 -1.58 16 4 C -0.13 -3.57 4.54 30.60 0.14 -3.43 16 5 C 0.17 3.87 3.01 44.24 0.13 4.00 16 6 H 0.16 1.89 8.14 -2.39 -0.02 1.87 16 7 N -0.71 -14.56 4.66 -461.41 -2.15 -16.71 16 8 C 0.70 20.36 7.59 179.06 1.36 21.72 16 9 N -0.85 -15.75 8.88 -184.75 -1.64 -17.39 16 10 O -0.62 -27.39 13.03 18.46 0.24 -27.15 16 11 C 0.49 17.30 6.82 87.65 0.60 17.89 16 12 O -0.56 -26.52 13.32 19.42 0.26 -26.26 16 13 N -0.70 -23.22 4.45 -436.92 -1.94 -25.16 16 14 C 0.14 5.77 2.59 46.18 0.12 5.89 16 15 H 0.07 3.01 7.45 -2.39 -0.02 2.99 16 16 C 0.20 10.80 4.79 86.73 0.42 11.21 16 17 N -0.62 -32.55 3.38 -691.96 -2.34 -34.89 16 18 C -0.23 -13.49 10.28 84.04 0.86 -12.63 16 19 H 0.09 4.85 7.83 -2.91 -0.02 4.83 16 20 C -0.07 -4.42 5.49 84.86 0.47 -3.95 16 21 N -0.96 -63.76 10.31 21.65 0.22 -63.54 16 22 Si 0.98 48.63 29.55 68.60 2.03 50.66 16 23 H -0.26 -11.59 7.11 99.48 0.71 -10.88 16 24 H -0.30 -15.01 7.11 99.48 0.71 -14.30 16 25 H -0.30 -14.85 7.11 99.48 0.71 -14.14 16 26 C 0.14 5.33 6.12 86.86 0.53 5.86 16 27 C -0.07 -2.37 0.83 -50.79 -0.04 -2.41 16 28 C -0.12 -3.96 8.57 71.98 0.62 -3.34 16 29 C -0.12 -2.50 8.22 71.98 0.59 -1.91 16 30 H 0.06 0.81 8.14 -2.38 -0.02 0.79 16 31 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 32 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 33 H 0.04 0.92 8.14 -2.39 -0.02 0.90 16 34 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 35 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 36 H 0.07 1.14 7.75 -2.39 -0.02 1.12 16 37 H 0.04 1.74 6.04 -2.39 -0.01 1.73 16 38 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 39 H 0.42 4.24 8.84 -92.71 -0.82 3.42 16 40 H 0.41 3.74 8.84 -92.72 -0.82 2.92 16 41 H 0.41 7.66 8.93 -92.71 -0.83 6.84 16 42 H 0.41 10.63 7.13 -92.71 -0.66 9.97 16 43 H -0.01 -0.44 7.41 -2.39 -0.02 -0.46 16 44 H -0.01 -0.34 7.38 -2.39 -0.02 -0.36 16 45 H 0.24 15.84 8.31 -92.71 -0.77 15.07 16 46 H 0.05 1.79 8.05 -2.39 -0.02 1.77 16 47 H 0.04 1.24 7.98 -2.39 -0.02 1.22 16 48 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 49 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 50 H 0.02 1.02 7.91 -2.39 -0.02 1.00 16 51 H 0.07 1.21 6.49 -2.39 -0.02 1.20 16 52 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 53 H 0.06 1.25 8.14 -2.38 -0.02 1.23 16 Total: -1.00 -96.84 412.75 -0.67 -97.51 By element: Atomic # 1 Polarization: 31.83 SS G_CDS: -2.19 Total: 29.64 kcal Atomic # 6 Polarization: 26.44 SS G_CDS: 6.84 Total: 33.28 kcal Atomic # 7 Polarization: -149.84 SS G_CDS: -7.85 Total: -157.68 kcal Atomic # 8 Polarization: -53.90 SS G_CDS: 0.50 Total: -53.41 kcal Atomic # 14 Polarization: 48.63 SS G_CDS: 2.03 Total: 50.66 kcal Total: -96.84 -0.67 -97.51 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570910148.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.192 kcal (2) G-P(sol) polarization free energy of solvation -96.837 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.646 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -97.508 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds