Wall clock time and date at job start Sat Apr 11 2020 06:13:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 N 1.46302 * 114.00032 * 2 1 4 4 C 1.46901 * 110.99680 * 243.95299 * 3 2 1 5 5 C 1.46898 * 110.99930 * 119.99617 * 3 2 1 6 6 C 1.53005 * 109.46791 * 184.99718 * 5 3 2 7 7 H 1.08999 * 109.47479 * 305.00474 * 6 5 3 8 8 O 1.42899 * 109.46969 * 65.00267 * 6 5 3 9 9 C 1.53003 * 109.47021 * 185.00061 * 6 5 3 10 10 N 1.46501 * 109.46920 * 175.00112 * 9 6 5 11 11 C 1.35971 * 126.06825 * 124.71616 * 10 9 6 12 12 C 1.35708 * 107.55009 * 179.87693 * 11 10 9 13 13 N 1.40793 * 126.06590 * 180.14882 * 12 11 10 14 14 C 1.46500 * 119.99997 * 180.25396 * 13 12 11 15 15 C 1.53001 * 109.47181 * 180.02562 * 14 13 12 16 16 C 1.53003 * 109.47296 * 299.99963 * 15 14 13 17 17 C 1.53000 * 109.47241 * 60.00289 * 15 14 13 18 18 C 1.53002 * 109.47180 * 180.02562 * 15 14 13 19 19 C 1.50694 * 109.47555 * 179.97438 * 18 15 14 20 20 H 1.08007 * 119.99461 * 0.02562 * 19 18 15 21 21 C 1.37878 * 120.00429 * 179.97438 * 19 18 15 22 22 N 1.31508 * 119.99856 * 359.97438 * 21 19 18 23 23 Si 1.86804 * 120.00115 * 180.02562 * 21 19 18 24 24 H 1.48498 * 109.46937 * 89.99841 * 23 21 19 25 25 H 1.48497 * 109.46898 * 210.00148 * 23 21 19 26 26 H 1.48506 * 109.47102 * 330.00051 * 23 21 19 27 27 C 1.40212 * 107.86277 * 0.38488 * 12 11 10 28 28 N 1.30862 * 108.37011 * 359.76253 * 27 12 11 29 29 H 1.08996 * 109.47218 * 300.00431 * 1 2 3 30 30 H 1.09001 * 109.46877 * 60.00387 * 1 2 3 31 31 H 1.09004 * 109.47203 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.47401 * 59.99748 * 4 3 2 33 33 H 1.09001 * 109.46874 * 299.99760 * 4 3 2 34 34 H 1.09004 * 109.46970 * 179.97438 * 4 3 2 35 35 H 1.08998 * 109.47095 * 304.99733 * 5 3 2 36 36 H 1.09002 * 109.47119 * 65.00442 * 5 3 2 37 37 H 0.96703 * 114.00146 * 59.99744 * 8 6 5 38 38 H 1.09002 * 109.47178 * 295.00207 * 9 6 5 39 39 H 1.09003 * 109.46963 * 55.00118 * 9 6 5 40 40 H 1.08004 * 126.22330 * 0.02562 * 11 10 9 41 41 H 0.97006 * 120.00373 * 0.25736 * 13 12 11 42 42 H 1.08991 * 109.47345 * 300.00171 * 14 13 12 43 43 H 1.09000 * 109.46956 * 60.00379 * 14 13 12 44 44 H 1.08998 * 109.46676 * 59.99941 * 16 15 14 45 45 H 1.08997 * 109.47521 * 180.02562 * 16 15 14 46 46 H 1.08998 * 109.47034 * 300.00325 * 16 15 14 47 47 H 1.09000 * 109.47017 * 59.99658 * 17 15 14 48 48 H 1.08997 * 109.46945 * 180.02562 * 17 15 14 49 49 H 1.08996 * 109.46889 * 299.99663 * 17 15 14 50 50 H 1.09000 * 109.46891 * 300.00227 * 18 15 14 51 51 H 1.08998 * 109.47113 * 59.99697 * 18 15 14 52 52 H 0.97002 * 120.00258 * 179.97438 * 22 21 19 53 53 H 1.08003 * 125.81761 * 179.74120 * 27 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 7 2.0241 1.3365 0.0000 4 6 2.7883 1.5724 -1.2322 5 6 2.8645 1.5386 1.1877 6 6 3.3674 2.9833 1.2168 7 1 3.8768 3.2097 0.2802 8 8 2.2592 3.8701 1.3826 9 6 4.3416 3.1609 2.3832 10 7 4.9140 4.5088 2.3405 11 6 4.8877 5.4219 3.3476 12 6 5.5259 6.5356 2.9069 13 7 5.7259 7.7210 3.6398 14 6 6.4318 8.8498 3.0285 15 6 6.5135 10.0032 4.0304 16 6 5.1003 10.4382 4.4237 17 6 7.2710 9.5429 5.2775 18 6 7.2502 11.1823 3.3918 19 6 7.3301 12.3187 4.3783 20 1 6.8989 12.2105 5.3627 21 6 7.9546 13.4960 4.0249 22 7 8.4810 13.6271 2.8269 23 14 8.0542 14.9043 5.2481 24 1 9.2970 14.7758 6.0506 25 1 8.0691 16.1960 4.5156 26 1 6.8755 14.8605 6.1504 27 6 5.9458 6.2981 1.5904 28 7 5.5801 5.0878 1.2529 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 2.1257 1.4849 -2.0932 33 1 3.5866 0.8344 -1.3115 34 1 3.2195 2.5732 -1.2063 35 1 2.2790 1.3394 2.0853 36 1 3.7155 0.8584 1.1506 37 1 1.7583 3.7258 2.1972 38 1 3.8104 3.0214 3.3248 39 1 5.1409 2.4240 2.3044 40 1 4.4423 5.2849 4.3219 41 1 5.3963 7.7903 4.5495 42 1 7.4387 8.5401 2.7488 43 1 5.8924 9.1775 2.1399 44 1 4.5751 9.5983 4.8785 45 1 5.1584 11.2602 5.1371 46 1 4.5606 10.7661 3.5353 47 1 8.2778 9.2331 4.9973 48 1 7.3288 10.3645 5.9914 49 1 6.7458 8.7031 5.7323 50 1 8.2570 10.8728 3.1113 51 1 6.7102 11.5101 2.5036 52 1 8.9200 14.4555 2.5780 53 1 6.4799 6.9954 0.9619 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001620883986.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:13:25 Heat of formation + Delta-G solvation = 31.982319 kcal Electronic energy + Delta-G solvation = -29472.154875 eV Core-core repulsion = 25382.872225 eV Total energy + Delta-G solvation = -4089.282650 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.226 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -40.95324 -38.84778 -37.56459 -37.07240 -34.22882 -34.17377 -32.80524 -32.00326 -30.07657 -28.68841 -27.23235 -26.93117 -26.40957 -26.36221 -25.23094 -23.99718 -22.67432 -21.69695 -21.03228 -20.07930 -17.95202 -17.71445 -17.29907 -16.58130 -16.48635 -16.27732 -15.79988 -15.71319 -15.30969 -14.93216 -14.55679 -14.29885 -14.21736 -14.08890 -13.83518 -13.75922 -13.57478 -13.11251 -12.91101 -12.75255 -12.53328 -12.32536 -12.23760 -12.15507 -12.00486 -11.99505 -11.44384 -11.17567 -10.97494 -10.81663 -10.75832 -10.61758 -10.58116 -10.41597 -10.28576 -10.18777 -9.91515 -9.53951 -9.21030 -9.16800 -9.13187 -8.87625 -8.33278 -6.75338 -5.97686 -3.98267 1.88649 2.10140 2.52715 3.20667 3.32539 3.39487 3.41602 3.87626 3.99282 4.11491 4.21161 4.42301 4.48023 4.57028 4.70838 4.94277 4.99857 5.00762 5.03970 5.06176 5.08807 5.16158 5.25268 5.32291 5.38186 5.39078 5.57139 5.60537 5.72675 5.74679 5.86831 5.94856 6.12350 6.28650 6.29696 6.36431 6.50456 6.50738 6.59372 6.71775 6.75079 7.08467 7.13064 7.15466 7.19258 7.26317 7.67305 7.74742 7.81213 7.86107 8.01959 8.30755 8.45200 9.06656 9.64694 11.13824 Molecular weight = 340.23amu Principal moments of inertia in cm(-1) A = 0.033034 B = 0.001589 C = 0.001581 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 847.408006 B =17616.262423 C =17710.632966 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.043 3.957 2 O -0.270 6.270 3 N -0.356 5.356 4 C 0.003 3.997 5 C 0.009 3.991 6 C 0.101 3.899 7 H 0.117 0.883 8 O -0.537 6.537 9 C 0.118 3.882 10 N -0.371 5.371 11 C -0.047 4.047 12 C 0.082 3.918 13 N -0.739 5.739 14 C 0.146 3.854 15 C -0.070 4.070 16 C -0.124 4.124 17 C -0.124 4.124 18 C 0.036 3.964 19 C -0.510 4.510 20 H 0.059 0.941 21 C 0.056 3.944 22 N -0.895 5.895 23 Si 0.888 3.112 24 H -0.282 1.282 25 H -0.288 1.288 26 H -0.275 1.275 27 C 0.014 3.986 28 N -0.277 5.277 29 H 0.045 0.955 30 H 0.045 0.955 31 H 0.087 0.913 32 H 0.077 0.923 33 H 0.041 0.959 34 H 0.094 0.906 35 H 0.088 0.912 36 H 0.058 0.942 37 H 0.372 0.628 38 H 0.097 0.903 39 H 0.088 0.912 40 H 0.163 0.837 41 H 0.395 0.605 42 H 0.047 0.953 43 H 0.048 0.952 44 H 0.030 0.970 45 H 0.063 0.937 46 H 0.045 0.955 47 H 0.045 0.955 48 H 0.063 0.937 49 H 0.030 0.970 50 H 0.017 0.983 51 H 0.017 0.983 52 H 0.259 0.741 53 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.233 -27.361 -1.859 30.450 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 O -0.274 6.274 3 N -0.124 5.124 4 C -0.145 4.145 5 C -0.120 4.120 6 C 0.039 3.961 7 H 0.135 0.865 8 O -0.341 6.341 9 C -0.005 4.005 10 N -0.160 5.160 11 C -0.193 4.193 12 C -0.026 4.026 13 N -0.376 5.376 14 C 0.021 3.979 15 C -0.071 4.071 16 C -0.181 4.181 17 C -0.181 4.181 18 C -0.002 4.002 19 C -0.548 4.548 20 H 0.077 0.923 21 C -0.145 4.145 22 N -0.535 5.535 23 Si 0.716 3.284 24 H -0.208 1.208 25 H -0.214 1.214 26 H -0.200 1.200 27 C -0.175 4.175 28 N -0.100 5.100 29 H 0.063 0.937 30 H 0.063 0.937 31 H 0.106 0.894 32 H 0.096 0.904 33 H 0.059 0.941 34 H 0.112 0.888 35 H 0.107 0.893 36 H 0.076 0.924 37 H 0.218 0.782 38 H 0.115 0.885 39 H 0.106 0.894 40 H 0.181 0.819 41 H 0.230 0.770 42 H 0.066 0.934 43 H 0.066 0.934 44 H 0.049 0.951 45 H 0.082 0.918 46 H 0.064 0.936 47 H 0.064 0.936 48 H 0.082 0.918 49 H 0.049 0.951 50 H 0.035 0.965 51 H 0.035 0.965 52 H 0.069 0.931 53 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges -13.166 -27.750 -3.565 30.921 hybrid contribution 0.376 0.797 2.110 2.287 sum -12.790 -26.953 -1.455 29.869 Atomic orbital electron populations 1.22605 0.80444 1.01587 1.00779 1.90674 1.21057 1.18742 1.96935 1.67603 1.34005 1.07928 1.02864 1.22831 0.97584 1.01961 0.92123 1.23109 0.97142 0.97188 0.94571 1.22361 0.86896 0.87052 0.99745 0.86522 1.86738 1.43093 1.58298 1.45966 1.22111 0.97185 0.81150 1.00076 1.47703 1.46390 1.11736 1.10163 1.21479 1.11125 0.90906 0.95837 1.17807 1.02897 0.89094 0.92845 1.44128 1.66265 1.11327 1.15882 1.21372 0.94936 0.85496 0.96051 1.20833 0.96242 0.95164 0.94816 1.21717 0.95475 0.99751 1.01189 1.21714 0.99012 0.99468 0.97911 1.19089 0.94811 0.90518 0.95738 1.21208 1.35742 0.98212 0.99638 0.92320 1.25005 0.95771 0.98592 0.95132 1.69959 1.38005 1.26470 1.19067 0.86661 0.78335 0.82060 0.81333 1.20813 1.21362 1.19969 1.23556 1.03893 0.94837 0.95225 1.77057 1.14102 1.09476 1.09350 0.93662 0.93650 0.89450 0.90385 0.94078 0.88763 0.89311 0.92396 0.78158 0.88485 0.89409 0.81949 0.76980 0.93441 0.93389 0.95136 0.91835 0.93563 0.93597 0.91845 0.95148 0.96488 0.96452 0.93106 0.80366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.27 11.51 101.05 1.16 1.44 16 2 O -0.27 -2.45 10.96 -13.92 -0.15 -2.60 16 3 N -0.36 -2.99 5.09 -121.13 -0.62 -3.61 16 4 C 0.00 0.02 9.89 60.07 0.59 0.62 16 5 C 0.01 0.06 5.16 -3.82 -0.02 0.04 16 6 C 0.10 0.75 2.94 -26.73 -0.08 0.67 16 7 H 0.12 1.10 6.01 -51.93 -0.31 0.79 16 8 O -0.54 -4.91 13.23 -35.23 -0.47 -5.38 16 9 C 0.12 0.83 6.16 -4.04 -0.02 0.81 16 10 N -0.37 -4.23 3.66 -60.99 -0.22 -4.45 16 11 C -0.05 -0.56 11.52 -16.62 -0.19 -0.75 16 12 C 0.08 1.16 6.96 -83.90 -0.58 0.58 16 13 N -0.74 -10.74 5.20 -58.80 -0.31 -11.04 16 14 C 0.15 2.45 4.52 -4.04 -0.02 2.43 16 15 C -0.07 -1.33 0.54 -154.51 -0.08 -1.42 16 16 C -0.12 -2.24 8.05 37.16 0.30 -1.94 16 17 C -0.12 -2.22 8.05 37.16 0.30 -1.92 16 18 C 0.04 0.88 4.04 -27.88 -0.11 0.76 16 19 C -0.51 -13.59 7.65 -34.44 -0.26 -13.85 16 20 H 0.06 1.52 5.68 -52.48 -0.30 1.22 16 21 C 0.06 1.56 5.46 -17.82 -0.10 1.46 16 22 N -0.90 -26.37 13.29 55.43 0.74 -25.64 16 23 Si 0.89 21.27 29.54 -169.99 -5.02 16.24 16 24 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 25 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 26 H -0.27 -6.44 7.11 56.52 0.40 -6.03 16 27 C 0.01 0.20 11.34 -17.22 -0.20 0.00 16 28 N -0.28 -3.90 12.34 30.70 0.38 -3.52 16 29 H 0.04 0.27 8.14 -51.93 -0.42 -0.16 16 30 H 0.04 0.28 8.14 -51.93 -0.42 -0.14 16 31 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.04 0.29 8.14 -51.93 -0.42 -0.13 16 34 H 0.09 0.72 6.03 -51.93 -0.31 0.40 16 35 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 37 H 0.37 2.02 9.05 45.56 0.41 2.43 16 38 H 0.10 0.41 8.07 -51.93 -0.42 0.00 16 39 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.16 1.46 8.06 -52.48 -0.42 1.04 16 41 H 0.39 5.37 6.29 -40.82 -0.26 5.12 16 42 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 43 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 44 H 0.03 0.46 6.86 -51.93 -0.36 0.11 16 45 H 0.06 1.24 6.62 -51.93 -0.34 0.89 16 46 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 47 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 48 H 0.06 1.23 6.62 -51.93 -0.34 0.88 16 49 H 0.03 0.46 6.86 -51.93 -0.36 0.10 16 50 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 51 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 52 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 53 H 0.18 2.41 7.90 -52.48 -0.41 2.00 16 LS Contribution 424.74 15.07 6.40 6.40 Total: -1.00 -33.05 424.74 -7.06 -40.11 By element: Atomic # 1 Polarization: 13.02 SS G_CDS: -8.48 Total: 4.54 kcal Atomic # 6 Polarization: -11.75 SS G_CDS: 0.69 Total: -11.06 kcal Atomic # 7 Polarization: -48.23 SS G_CDS: -0.03 Total: -48.26 kcal Atomic # 8 Polarization: -7.36 SS G_CDS: -0.62 Total: -7.98 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 6.40 Total: 6.40 kcal Total: -33.05 -7.06 -40.11 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001620883986.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.093 kcal (2) G-P(sol) polarization free energy of solvation -33.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.110 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds