Wall clock time and date at job start Sat Apr 11 2020 06:11:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53007 * 109.46949 * 2 1 4 4 H 1.09003 * 109.47026 * 54.99466 * 3 2 1 5 5 C 1.50693 * 109.47080 * 174.99888 * 3 2 1 6 6 O 1.21280 * 120.00061 * 94.37753 * 5 3 2 7 7 N 1.34779 * 120.00004 * 274.37333 * 5 3 2 8 8 C 1.46495 * 119.99955 * 180.02562 * 7 5 3 9 9 C 1.53000 * 109.47105 * 180.02562 * 8 7 5 10 10 H 1.09001 * 112.85018 * 43.80338 * 9 8 7 11 11 C 1.53780 * 113.61679 * 174.99968 * 9 8 7 12 12 C 1.53779 * 87.08206 * 139.98035 * 11 9 8 13 13 H 1.09000 * 113.61356 * 89.20265 * 12 11 9 14 14 N 1.46906 * 113.61696 * 220.01923 * 12 11 9 15 15 C 1.46902 * 111.00174 * 205.00378 * 14 12 11 16 16 C 1.50691 * 109.46948 * 179.97438 * 15 14 12 17 17 O 1.21293 * 120.00498 * 0.02562 * 16 15 14 18 18 N 1.34779 * 120.00062 * 179.97438 * 16 15 14 19 19 C 1.37102 * 120.00390 * 180.02562 * 18 16 15 20 20 H 1.07995 * 119.99450 * 359.72091 * 19 18 16 21 21 C 1.38948 * 120.00145 * 179.97438 * 19 18 16 22 22 N 1.31412 * 119.99787 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 120.00000 * 179.97438 * 21 19 18 24 24 H 1.48498 * 109.47196 * 59.99976 * 23 21 19 25 25 H 1.48500 * 109.47214 * 180.02562 * 23 21 19 26 26 H 1.48504 * 109.46971 * 300.00067 * 23 21 19 27 27 C 1.53778 * 87.08342 * 334.56979 * 12 11 9 28 28 N 1.46899 * 109.47057 * 295.00239 * 3 2 1 29 29 C 1.46900 * 110.99902 * 184.94085 * 28 3 2 30 30 C 1.46898 * 110.99871 * 308.88843 * 28 3 2 31 31 H 1.09004 * 109.46563 * 179.97438 * 1 2 3 32 32 H 1.08989 * 109.47192 * 299.99789 * 1 2 3 33 33 H 1.08998 * 109.46893 * 60.00332 * 1 2 3 34 34 H 1.09002 * 109.47356 * 239.99983 * 2 1 3 35 35 H 1.08998 * 109.46893 * 119.99668 * 2 1 3 36 36 H 0.96997 * 120.00142 * 0.02562 * 7 5 3 37 37 H 1.09003 * 109.47573 * 60.00373 * 8 7 5 38 38 H 1.09001 * 109.47280 * 300.00278 * 8 7 5 39 39 H 1.09001 * 113.61536 * 25.43317 * 11 9 8 40 40 H 1.09002 * 113.69536 * 254.53929 * 11 9 8 41 41 H 1.00903 * 110.99814 * 328.95225 * 14 12 11 42 42 H 1.08997 * 109.47066 * 59.99740 * 15 14 12 43 43 H 1.09002 * 109.46826 * 300.00275 * 15 14 12 44 44 H 0.96999 * 119.99612 * 0.02562 * 18 16 15 45 45 H 0.97000 * 119.99557 * 179.97438 * 22 21 19 46 46 H 1.08993 * 113.61483 * 139.97842 * 27 12 11 47 47 H 1.08996 * 113.61366 * 270.88300 * 27 12 11 48 48 H 1.08988 * 109.47491 * 59.99244 * 29 28 3 49 49 H 1.09001 * 109.47093 * 179.97438 * 29 28 3 50 50 H 1.09003 * 109.46898 * 299.99570 * 29 28 3 51 51 H 1.09004 * 109.47056 * 66.24710 * 30 28 3 52 52 H 1.09000 * 109.47309 * 186.25094 * 30 28 3 53 53 H 1.09003 * 109.47410 * 306.24973 * 30 28 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6053 1.9816 0.8418 5 6 3.5418 1.4444 0.1239 6 8 4.2324 1.4949 -0.8719 7 7 4.1177 1.3901 1.3412 8 6 5.5777 1.3924 1.4616 9 6 5.9676 1.3241 2.9395 10 1 5.3784 0.5981 3.4997 11 6 7.4826 1.1985 3.1718 12 6 7.3038 2.1738 4.3472 13 1 7.0812 1.6809 5.2936 14 7 8.3832 3.1639 4.4598 15 6 8.5082 3.6518 5.8398 16 6 9.6231 4.6627 5.9161 17 8 10.2516 4.9490 4.9189 18 7 9.9214 5.2496 7.0921 19 6 10.9355 6.1697 7.1615 20 1 11.4982 6.4208 6.2746 21 6 11.2426 6.7751 8.3739 22 7 10.5608 6.4660 9.4539 23 14 12.6247 8.0282 8.4685 24 1 12.3228 9.1673 7.5650 25 1 12.7507 8.5219 9.8633 26 1 13.8999 7.3909 8.0524 27 6 6.0574 2.7016 3.6173 28 7 1.6513 2.0993 -1.2552 29 6 2.2238 3.4494 -1.3422 30 6 2.0392 1.2873 -2.4163 31 1 -0.3632 -1.0277 -0.0005 32 1 -0.3633 0.5137 0.8899 33 1 -0.3633 0.5138 -0.8900 34 1 1.8934 -0.5138 -0.8900 35 1 1.8933 -0.5138 0.8900 36 1 3.5655 1.3494 2.1376 37 1 5.9771 2.3064 1.0220 38 1 5.9869 0.5285 0.9380 39 1 8.0842 1.6020 2.3573 40 1 7.7978 0.2005 3.4766 41 1 9.2580 2.7842 4.1300 42 1 8.7307 2.8153 6.5022 43 1 7.5721 4.1188 6.1462 44 1 9.4186 5.0209 7.8895 45 1 10.7755 6.8884 10.3003 46 1 5.2207 2.9167 4.2818 47 1 6.2693 3.5160 2.9246 48 1 3.3111 3.3862 -1.3029 49 1 1.9208 3.9127 -2.2811 50 1 1.8644 4.0509 -0.5072 51 1 1.4625 0.3623 -2.4217 52 1 1.8411 1.8445 -3.3319 53 1 3.1020 1.0525 -2.3567 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001656160495.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:14 Heat of formation + Delta-G solvation = -72.856279 kcal Electronic energy + Delta-G solvation = -29240.569831 eV Core-core repulsion = 25146.741038 eV Total energy + Delta-G solvation = -4093.828793 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.226 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.56761 -40.50353 -39.81451 -37.89556 -36.23238 -35.82957 -34.59713 -33.76139 -33.24563 -30.02280 -28.61046 -28.30321 -27.37333 -26.62620 -25.70937 -24.18946 -22.87234 -22.26370 -21.22151 -20.99601 -20.24369 -19.86615 -18.30641 -17.89811 -17.49824 -16.86384 -16.82339 -16.51515 -16.32038 -16.25483 -15.88551 -15.73963 -15.67693 -15.25914 -15.02144 -14.74250 -14.46683 -14.04663 -14.00976 -13.59175 -13.50516 -13.31831 -13.30028 -13.14176 -13.00820 -12.80629 -12.72489 -12.65010 -12.49407 -12.45180 -12.37609 -12.13466 -11.90910 -11.80492 -11.67135 -11.60041 -11.51411 -11.20441 -11.16872 -10.33904 -10.08944 -10.02881 -9.29928 -9.17491 -8.47683 -5.96662 1.39058 1.41077 1.51993 1.53280 2.04222 2.17635 2.28749 2.93093 2.96795 3.19529 3.46399 3.60059 3.64117 3.81558 3.89326 3.90848 3.98991 4.07824 4.23706 4.24789 4.35425 4.43377 4.48188 4.49046 4.57020 4.59060 4.59627 4.66969 4.71414 4.81383 4.84498 4.89979 4.94081 4.95720 4.97174 5.07199 5.13011 5.17701 5.26806 5.28567 5.38988 5.41602 5.53579 5.55331 5.88717 5.93427 5.94731 6.19374 6.42527 6.53030 6.59337 7.11413 7.22095 7.55025 8.10701 8.69364 Molecular weight = 340.23amu Principal moments of inertia in cm(-1) A = 0.023998 B = 0.001515 C = 0.001494 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1166.473063 B =18472.045018 C =18737.592280 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.111 4.111 3 C 0.067 3.933 4 H 0.123 0.877 5 C 0.482 3.518 6 O -0.580 6.580 7 N -0.712 5.712 8 C 0.135 3.865 9 C -0.100 4.100 10 H 0.125 0.875 11 C -0.129 4.129 12 C 0.052 3.948 13 H 0.090 0.910 14 N -0.675 5.675 15 C 0.066 3.934 16 C 0.435 3.565 17 O -0.626 6.626 18 N -0.572 5.572 19 C -0.338 4.338 20 H 0.077 0.923 21 C -0.011 4.011 22 N -0.919 5.919 23 Si 0.993 3.007 24 H -0.273 1.273 25 H -0.269 1.269 26 H -0.272 1.272 27 C -0.121 4.121 28 N -0.513 5.513 29 C 0.012 3.988 30 C 0.002 3.998 31 H 0.061 0.939 32 H 0.063 0.937 33 H 0.056 0.944 34 H 0.061 0.939 35 H 0.085 0.915 36 H 0.416 0.584 37 H 0.045 0.955 38 H 0.060 0.940 39 H 0.076 0.924 40 H 0.086 0.914 41 H 0.343 0.657 42 H 0.068 0.932 43 H 0.102 0.898 44 H 0.397 0.603 45 H 0.278 0.722 46 H 0.079 0.921 47 H 0.066 0.934 48 H 0.019 0.981 49 H 0.075 0.925 50 H 0.076 0.924 51 H 0.078 0.922 52 H 0.064 0.936 53 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.095 -16.764 -13.045 31.378 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.149 4.149 3 C -0.045 4.045 4 H 0.141 0.859 5 C 0.268 3.732 6 O -0.460 6.460 7 N -0.364 5.364 8 C 0.011 3.989 9 C -0.119 4.119 10 H 0.143 0.857 11 C -0.168 4.168 12 C -0.057 4.057 13 H 0.108 0.892 14 N -0.307 5.307 15 C -0.066 4.066 16 C 0.223 3.777 17 O -0.513 6.513 18 N -0.210 5.210 19 C -0.467 4.467 20 H 0.095 0.905 21 C -0.211 4.211 22 N -0.559 5.559 23 Si 0.817 3.183 24 H -0.199 1.199 25 H -0.193 1.193 26 H -0.197 1.197 27 C -0.159 4.159 28 N -0.235 5.235 29 C -0.136 4.136 30 C -0.146 4.146 31 H 0.080 0.920 32 H 0.082 0.918 33 H 0.075 0.925 34 H 0.079 0.921 35 H 0.103 0.897 36 H 0.253 0.747 37 H 0.063 0.937 38 H 0.078 0.922 39 H 0.095 0.905 40 H 0.105 0.895 41 H 0.163 0.837 42 H 0.086 0.914 43 H 0.120 0.880 44 H 0.231 0.769 45 H 0.088 0.912 46 H 0.097 0.903 47 H 0.084 0.916 48 H 0.037 0.963 49 H 0.094 0.906 50 H 0.095 0.905 51 H 0.096 0.904 52 H 0.083 0.917 53 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -23.078 -15.889 -14.402 31.504 hybrid contribution 1.973 0.089 1.166 2.294 sum -21.105 -15.799 -13.236 29.500 Atomic orbital electron populations 1.21632 0.93199 1.01972 1.02785 1.21587 0.98179 0.91954 1.03164 1.22167 0.87640 0.99115 0.95615 0.85892 1.22519 0.92779 0.74818 0.83069 1.90626 1.66233 1.51457 1.37702 1.46138 1.07723 1.73716 1.08814 1.21220 0.80330 1.00845 0.96491 1.22535 0.96897 0.98636 0.93859 0.85746 1.23162 0.96095 0.99736 0.97800 1.23205 0.92530 0.91818 0.98141 0.89197 1.60254 1.10191 1.40363 1.19892 1.21583 0.97195 0.96404 0.91426 1.20973 0.87680 0.85928 0.83148 1.90490 1.56322 1.67772 1.36680 1.41930 1.31964 1.37563 1.09496 1.19637 1.11973 1.18931 0.96175 0.90454 1.26029 1.00894 1.00113 0.94090 1.69662 1.41714 1.44291 1.00277 0.84992 0.77811 0.77873 0.77666 1.19852 1.19325 1.19715 1.23136 0.97331 0.96308 0.99150 1.62562 1.56529 1.02850 1.01605 1.22530 0.97479 0.90139 1.03437 1.22718 1.00834 0.98426 0.92634 0.92006 0.91761 0.92454 0.92053 0.89695 0.74698 0.93681 0.92153 0.90491 0.89516 0.83727 0.91413 0.88030 0.76925 0.91246 0.90275 0.91570 0.96257 0.90646 0.90505 0.90365 0.91690 0.93705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.07 9.75 71.98 0.70 -0.37 16 2 C -0.11 -1.06 4.92 30.60 0.15 -0.91 16 3 C 0.07 0.85 2.33 44.17 0.10 0.96 16 4 H 0.12 1.08 8.14 -2.39 -0.02 1.07 16 5 C 0.48 8.67 6.02 87.65 0.53 9.20 16 6 O -0.58 -15.50 12.25 -3.03 -0.04 -15.54 16 7 N -0.71 -9.60 5.56 -463.07 -2.57 -12.18 16 8 C 0.14 2.27 5.51 86.38 0.48 2.75 16 9 C -0.10 -1.33 3.75 -10.27 -0.04 -1.37 16 10 H 0.12 1.01 8.14 -2.39 -0.02 0.99 16 11 C -0.13 -2.20 7.21 31.12 0.22 -1.97 16 12 C 0.05 1.09 4.14 45.44 0.19 1.28 16 13 H 0.09 1.59 7.87 -2.39 -0.02 1.57 16 14 N -0.67 -20.86 6.18 -492.86 -3.05 -23.91 16 15 C 0.07 2.24 6.01 85.55 0.51 2.75 16 16 C 0.44 20.87 7.82 87.65 0.69 21.56 16 17 O -0.63 -35.29 15.78 -3.07 -0.05 -35.34 16 18 N -0.57 -29.53 5.29 -306.99 -1.62 -31.15 16 19 C -0.34 -19.35 9.68 84.04 0.81 -18.54 16 20 H 0.08 4.73 7.16 -2.91 -0.02 4.71 16 21 C -0.01 -0.61 5.50 84.93 0.47 -0.14 16 22 N -0.92 -49.43 13.05 21.66 0.28 -49.15 16 23 Si 0.99 43.06 29.55 68.60 2.03 45.08 16 24 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 25 H -0.27 -10.91 7.11 99.48 0.71 -10.20 16 26 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 27 C -0.12 -2.23 7.43 31.12 0.23 -1.99 16 28 N -0.51 -8.11 4.54 -927.73 -4.21 -12.32 16 29 C 0.01 0.21 9.17 127.69 1.17 1.38 16 30 C 0.00 0.03 8.55 127.69 1.09 1.12 16 31 H 0.06 0.39 8.14 -2.38 -0.02 0.37 16 32 H 0.06 0.40 8.14 -2.39 -0.02 0.38 16 33 H 0.06 0.59 7.71 -2.39 -0.02 0.57 16 34 H 0.06 0.75 6.15 -2.39 -0.01 0.74 16 35 H 0.08 0.57 8.14 -2.39 -0.02 0.55 16 36 H 0.42 2.95 8.47 -92.71 -0.79 2.17 16 37 H 0.04 1.01 7.85 -2.39 -0.02 0.99 16 38 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 39 H 0.08 1.58 8.10 -2.39 -0.02 1.56 16 40 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 41 H 0.34 11.31 8.25 -89.69 -0.74 10.58 16 42 H 0.07 1.97 8.13 -2.39 -0.02 1.95 16 43 H 0.10 3.12 8.14 -2.39 -0.02 3.10 16 44 H 0.40 19.29 7.90 -92.71 -0.73 18.56 16 45 H 0.28 14.01 8.31 -92.71 -0.77 13.24 16 46 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 47 H 0.07 1.60 7.90 -2.39 -0.02 1.58 16 48 H 0.02 0.43 5.92 -2.39 -0.01 0.42 16 49 H 0.07 1.18 8.05 -2.39 -0.02 1.16 16 50 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 51 H 0.08 1.09 6.41 -2.38 -0.02 1.07 16 52 H 0.06 1.03 8.01 -2.39 -0.02 1.01 16 53 H 0.04 1.01 5.29 -2.39 -0.01 0.99 16 Total: -1.00 -73.88 420.20 -3.25 -77.13 By element: Atomic # 1 Polarization: 43.00 SS G_CDS: -1.33 Total: 41.67 kcal Atomic # 6 Polarization: 8.39 SS G_CDS: 7.31 Total: 15.70 kcal Atomic # 7 Polarization: -117.53 SS G_CDS: -11.17 Total: -128.70 kcal Atomic # 8 Polarization: -50.79 SS G_CDS: -0.09 Total: -50.88 kcal Atomic # 14 Polarization: 43.06 SS G_CDS: 2.03 Total: 45.08 kcal Total: -73.88 -3.25 -77.13 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001656160495.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.276 kcal (2) G-P(sol) polarization free energy of solvation -73.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.132 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds