Wall clock time and date at job start Sat Apr 11 2020 06:12:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.46960 * 2 1 4 4 H 1.08997 * 109.47406 * 304.26271 * 3 2 1 5 5 C 1.53000 * 109.47384 * 184.25992 * 3 2 1 6 6 N 1.46505 * 109.47309 * 185.00027 * 5 3 2 7 7 C 1.34769 * 119.99825 * 180.02562 * 6 5 3 8 8 O 1.21282 * 120.00541 * 359.97438 * 7 6 5 9 9 C 1.50706 * 119.99799 * 180.02562 * 7 6 5 10 10 C 1.53111 * 109.52235 * 299.68232 * 9 7 6 11 11 C 1.53042 * 109.27989 * 182.44146 * 10 9 7 12 12 N 1.46836 * 109.52333 * 59.17699 * 11 10 9 13 13 C 1.46897 * 111.00243 * 174.16353 * 12 11 10 14 14 C 1.46852 * 111.20201 * 298.26224 * 12 11 10 15 15 C 1.53032 * 109.52225 * 61.73742 * 14 12 11 16 16 N 1.46911 * 109.46969 * 64.26174 * 3 2 1 17 17 C 1.46893 * 110.99768 * 65.55016 * 16 3 2 18 18 C 1.50696 * 109.46946 * 183.46459 * 17 16 3 19 19 O 1.21298 * 120.00106 * 359.97438 * 18 17 16 20 20 N 1.34780 * 120.00357 * 180.02562 * 18 17 16 21 21 C 1.37097 * 120.00458 * 179.97438 * 20 18 17 22 22 H 1.07996 * 119.99620 * 359.97438 * 21 20 18 23 23 C 1.38944 * 120.00044 * 179.97438 * 21 20 18 24 24 N 1.31412 * 119.99977 * 359.97438 * 23 21 20 25 25 Si 1.86797 * 119.99905 * 179.97438 * 23 21 20 26 26 H 1.48495 * 109.47375 * 59.99653 * 25 23 21 27 27 H 1.48504 * 109.47202 * 180.02562 * 25 23 21 28 28 H 1.48498 * 109.47201 * 299.99578 * 25 23 21 29 29 H 1.09004 * 109.46931 * 294.72909 * 1 2 3 30 30 H 1.08996 * 109.47355 * 54.73152 * 1 2 3 31 31 H 1.09004 * 109.46783 * 174.73351 * 1 2 3 32 32 H 1.08997 * 109.47200 * 240.00901 * 2 1 3 33 33 H 1.08994 * 109.47731 * 120.00232 * 2 1 3 34 34 H 1.08998 * 109.47276 * 305.00398 * 5 3 2 35 35 H 1.08996 * 109.47099 * 65.00556 * 5 3 2 36 36 H 0.97000 * 119.99635 * 0.02562 * 6 5 3 37 37 H 1.09007 * 109.52412 * 59.87248 * 9 7 6 38 38 H 1.08997 * 109.50849 * 302.38258 * 10 9 7 39 39 H 1.09004 * 109.50553 * 62.50210 * 10 9 7 40 40 H 1.09000 * 109.46015 * 299.16217 * 11 10 9 41 41 H 1.08994 * 109.46325 * 179.19707 * 11 10 9 42 42 H 1.09000 * 109.47650 * 184.21159 * 13 12 11 43 43 H 1.09000 * 109.47048 * 304.21142 * 13 12 11 44 44 H 1.09000 * 109.47425 * 64.20838 * 13 12 11 45 45 H 1.09000 * 109.46002 * 301.72356 * 14 12 11 46 46 H 1.09001 * 109.45794 * 181.75203 * 14 12 11 47 47 H 1.09001 * 109.50399 * 180.88399 * 15 14 12 48 48 H 1.08999 * 109.53689 * 60.78894 * 15 14 12 49 49 H 1.00901 * 110.99711 * 189.50192 * 16 3 2 50 50 H 1.08996 * 109.47924 * 63.45991 * 17 16 3 51 51 H 1.09006 * 109.47289 * 303.45515 * 17 16 3 52 52 H 0.97000 * 119.99680 * 359.97438 * 20 18 17 53 53 H 0.97000 * 119.99889 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6156 1.9779 -0.8493 5 6 3.5662 1.4439 -0.1071 6 7 4.0629 2.8170 0.0128 7 6 5.3863 3.0629 -0.0531 8 8 6.1662 2.1476 -0.2111 9 6 5.8973 4.4753 0.0709 10 6 5.3124 5.3317 -1.0555 11 6 5.8821 6.7490 -0.9606 12 7 7.3455 6.6980 -1.0697 13 6 7.9171 8.0502 -1.1216 14 6 7.9332 5.9201 0.0285 15 6 7.4247 4.4782 -0.0369 16 7 1.6361 2.1046 1.2477 17 6 2.2958 1.4899 2.4073 18 6 1.7938 2.1371 3.6722 19 8 0.9681 3.0237 3.6135 20 7 2.2632 1.7316 4.8688 21 6 1.8069 2.3208 6.0196 22 1 1.0717 3.1102 5.9672 23 6 2.2904 1.9023 7.2532 24 7 3.1846 0.9415 7.3168 25 14 1.6693 2.7056 8.8211 26 1 0.2007 2.5136 8.9274 27 1 2.3365 2.0844 9.9934 28 1 1.9776 4.1579 8.7889 29 1 -0.3633 0.4299 0.9335 30 1 -0.3634 0.5934 -0.8390 31 1 -0.3633 -1.0234 -0.0943 32 1 1.8933 -0.5137 -0.8900 33 1 1.8934 -0.5138 0.8899 34 1 3.9871 0.8341 0.6922 35 1 3.8630 1.0333 -1.0722 36 1 3.4392 3.5490 0.1396 37 1 5.5995 4.8872 1.0352 38 1 5.5779 4.8966 -2.0189 39 1 4.2273 5.3685 -0.9588 40 1 5.6045 7.1886 -0.0026 41 1 5.4785 7.3576 -1.7697 42 1 8.9938 7.9839 -1.2774 43 1 7.4645 8.6046 -1.9437 44 1 7.7169 8.5656 -0.1822 45 1 7.6460 6.3636 0.9819 46 1 9.0194 5.9266 -0.0625 47 1 7.8488 3.9050 0.7876 48 1 7.7235 4.0289 -0.9840 49 1 1.8233 3.0953 1.2083 50 1 3.3737 1.6316 2.3296 51 1 2.0703 0.4237 2.4306 52 1 2.9238 1.0229 4.9158 53 1 3.5219 0.6491 8.1780 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001665839688.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:12:20 Heat of formation + Delta-G solvation = -106.198101 kcal Electronic energy + Delta-G solvation = -30709.130922 eV Core-core repulsion = 26613.856319 eV Total energy + Delta-G solvation = -4095.274603 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.226 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.43174 -40.33701 -39.41351 -38.50928 -35.96914 -35.14882 -34.47850 -33.35555 -33.00696 -31.86215 -29.89831 -28.42030 -27.61508 -26.06466 -24.84601 -24.17409 -23.61086 -21.86205 -21.50169 -20.74945 -20.45215 -19.85874 -18.52496 -18.18061 -17.21413 -17.05718 -16.71550 -16.53799 -16.16396 -16.04948 -15.88106 -15.66330 -15.53615 -15.15405 -15.10059 -14.70177 -14.48244 -14.39120 -14.16796 -13.82808 -13.75246 -13.47803 -13.41187 -13.33095 -13.10647 -12.88118 -12.65286 -12.59546 -12.43594 -12.28551 -12.26368 -12.18853 -12.13912 -11.79003 -11.74068 -11.54142 -11.48735 -11.46387 -10.79279 -10.35054 -10.17048 -10.02291 -9.36686 -9.31137 -8.47004 -5.96084 1.38853 1.40634 1.51692 1.56544 2.04316 2.09737 2.28286 2.92095 2.96598 3.20088 3.50651 3.54062 3.68500 3.74031 3.78027 4.03227 4.13432 4.19399 4.20827 4.30514 4.32679 4.38545 4.43317 4.45263 4.53176 4.55706 4.56886 4.67162 4.68181 4.71024 4.73661 4.86495 4.91506 4.95286 4.98956 5.03153 5.04091 5.12332 5.19796 5.27277 5.35902 5.39352 5.39868 5.58059 5.86511 6.06942 6.07887 6.11035 6.37735 6.43151 6.58597 7.11705 7.15816 7.55479 8.10062 8.70283 Molecular weight = 340.23amu Principal moments of inertia in cm(-1) A = 0.008127 B = 0.003002 C = 0.002402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3444.298093 B = 9325.643623 C =11652.470004 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.114 4.114 3 C 0.087 3.913 4 H 0.113 0.887 5 C 0.084 3.916 6 N -0.719 5.719 7 C 0.518 3.482 8 O -0.580 6.580 9 C -0.107 4.107 10 C -0.099 4.099 11 C 0.055 3.945 12 N -0.557 5.557 13 C 0.024 3.976 14 C 0.059 3.941 15 C -0.092 4.092 16 N -0.659 5.659 17 C 0.064 3.936 18 C 0.440 3.560 19 O -0.617 6.617 20 N -0.575 5.575 21 C -0.332 4.332 22 H 0.081 0.919 23 C -0.014 4.014 24 N -0.923 5.923 25 Si 0.993 3.007 26 H -0.271 1.271 27 H -0.272 1.272 28 H -0.270 1.270 29 H 0.039 0.961 30 H 0.061 0.939 31 H 0.055 0.945 32 H 0.088 0.912 33 H 0.055 0.945 34 H 0.053 0.947 35 H 0.078 0.922 36 H 0.408 0.592 37 H 0.099 0.901 38 H 0.070 0.930 39 H 0.091 0.909 40 H 0.037 0.963 41 H 0.094 0.906 42 H 0.073 0.927 43 H 0.078 0.922 44 H 0.026 0.974 45 H 0.035 0.965 46 H 0.085 0.915 47 H 0.061 0.939 48 H 0.064 0.936 49 H 0.345 0.655 50 H 0.054 0.946 51 H 0.100 0.900 52 H 0.393 0.607 53 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.024 7.527 -19.675 21.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.152 4.152 3 C -0.023 4.023 4 H 0.131 0.869 5 C -0.041 4.041 6 N -0.372 5.372 7 C 0.306 3.694 8 O -0.459 6.459 9 C -0.128 4.128 10 C -0.137 4.137 11 C -0.072 4.072 12 N -0.282 5.282 13 C -0.123 4.123 14 C -0.069 4.069 15 C -0.130 4.130 16 N -0.291 5.291 17 C -0.068 4.068 18 C 0.228 3.772 19 O -0.503 6.503 20 N -0.213 5.213 21 C -0.462 4.462 22 H 0.099 0.901 23 C -0.214 4.214 24 N -0.564 5.564 25 Si 0.816 3.184 26 H -0.196 1.196 27 H -0.197 1.197 28 H -0.195 1.195 29 H 0.058 0.942 30 H 0.080 0.920 31 H 0.074 0.926 32 H 0.106 0.894 33 H 0.073 0.927 34 H 0.072 0.928 35 H 0.096 0.904 36 H 0.244 0.756 37 H 0.117 0.883 38 H 0.088 0.912 39 H 0.109 0.891 40 H 0.056 0.944 41 H 0.112 0.888 42 H 0.092 0.908 43 H 0.097 0.903 44 H 0.045 0.955 45 H 0.054 0.946 46 H 0.103 0.897 47 H 0.080 0.920 48 H 0.083 0.917 49 H 0.165 0.835 50 H 0.072 0.928 51 H 0.118 0.882 52 H 0.227 0.773 53 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 5.641 6.768 -20.028 21.880 hybrid contribution 0.677 0.708 1.935 2.169 sum 6.318 7.475 -18.093 20.570 Atomic orbital electron populations 1.21571 0.94921 1.01200 1.01828 1.21542 0.96953 0.94105 1.02627 1.22042 0.90210 0.97558 0.92462 0.86905 1.22135 0.96453 0.83210 1.02339 1.45948 1.07337 1.10081 1.73810 1.21005 0.82064 0.91636 0.74737 1.90678 1.56759 1.47865 1.50641 1.21431 0.97732 0.91483 1.02194 1.21554 1.00594 0.94356 0.97206 1.22133 0.87227 0.96523 1.01356 1.61957 1.05773 1.15508 1.44979 1.22397 1.00886 0.88138 1.00910 1.22077 0.99998 0.92740 0.92079 1.21319 0.92795 0.96377 1.02555 1.60188 1.60752 1.07592 1.00533 1.21515 0.96532 1.00064 0.88695 1.20816 0.84864 0.85988 0.85542 1.90487 1.37285 1.35038 1.87523 1.41960 1.39166 1.35103 1.05023 1.19633 1.23406 1.18535 0.84579 0.90080 1.26057 0.96353 0.96964 1.02026 1.69680 1.30093 1.28888 1.27716 0.84994 0.78429 0.78337 0.76635 1.19619 1.19687 1.19527 0.94158 0.91962 0.92575 0.89371 0.92676 0.92846 0.90383 0.75555 0.88252 0.91155 0.89072 0.94426 0.88817 0.90836 0.90301 0.95520 0.94647 0.89674 0.92025 0.91706 0.83544 0.92775 0.88217 0.77337 0.91365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.86 9.73 71.98 0.70 -2.16 16 2 C -0.11 -2.20 5.31 30.59 0.16 -2.04 16 3 C 0.09 1.72 2.71 44.91 0.12 1.84 16 4 H 0.11 1.77 8.14 -2.39 -0.02 1.75 16 5 C 0.08 1.80 4.47 86.38 0.39 2.18 16 6 N -0.72 -14.98 5.22 -463.06 -2.42 -17.40 16 7 C 0.52 13.03 7.16 87.66 0.63 13.66 16 8 O -0.58 -19.32 15.98 -3.04 -0.05 -19.37 16 9 C -0.11 -2.14 2.59 -11.46 -0.03 -2.17 16 10 C -0.10 -1.50 5.26 30.65 0.16 -1.34 16 11 C 0.06 0.79 5.46 86.33 0.47 1.26 16 12 N -0.56 -9.06 4.91 -922.62 -4.53 -13.59 16 13 C 0.02 0.30 9.59 127.69 1.22 1.53 16 14 C 0.06 1.03 5.46 86.32 0.47 1.50 16 15 C -0.09 -1.96 4.68 30.64 0.14 -1.82 16 16 N -0.66 -18.06 5.41 -495.58 -2.68 -20.74 16 17 C 0.06 2.15 5.30 85.56 0.45 2.61 16 18 C 0.44 20.54 7.83 87.66 0.69 21.22 16 19 O -0.62 -32.93 15.85 -3.09 -0.05 -32.97 16 20 N -0.58 -29.60 5.29 -306.99 -1.62 -31.23 16 21 C -0.33 -18.80 9.68 84.04 0.81 -17.99 16 22 H 0.08 4.85 7.16 -2.91 -0.02 4.83 16 23 C -0.01 -0.78 5.50 84.92 0.47 -0.31 16 24 N -0.92 -50.47 13.05 21.66 0.28 -50.18 16 25 Si 0.99 42.95 29.55 68.60 2.03 44.97 16 26 H -0.27 -11.56 7.11 99.48 0.71 -10.86 16 27 H -0.27 -11.17 7.11 99.48 0.71 -10.46 16 28 H -0.27 -11.45 7.11 99.48 0.71 -10.75 16 29 H 0.04 1.09 7.88 -2.39 -0.02 1.07 16 30 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 31 H 0.06 1.04 8.14 -2.38 -0.02 1.02 16 32 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 33 H 0.05 1.21 6.28 -2.39 -0.02 1.20 16 34 H 0.05 1.38 6.71 -2.39 -0.02 1.36 16 35 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 36 H 0.41 6.96 6.72 -92.71 -0.62 6.34 16 37 H 0.10 1.95 8.14 -2.38 -0.02 1.93 16 38 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 39 H 0.09 1.05 7.66 -2.39 -0.02 1.03 16 40 H 0.04 0.55 8.14 -2.39 -0.02 0.53 16 41 H 0.09 1.07 8.08 -2.39 -0.02 1.05 16 42 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 43 H 0.08 0.81 8.09 -2.39 -0.02 0.79 16 44 H 0.03 0.33 8.14 -2.39 -0.02 0.31 16 45 H 0.04 0.62 8.14 -2.39 -0.02 0.60 16 46 H 0.08 1.35 8.12 -2.39 -0.02 1.33 16 47 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 48 H 0.06 1.56 8.04 -2.39 -0.02 1.54 16 49 H 0.34 9.35 7.29 -89.69 -0.65 8.70 16 50 H 0.05 1.75 6.49 -2.39 -0.02 1.74 16 51 H 0.10 3.17 6.22 -2.38 -0.01 3.15 16 52 H 0.39 19.64 7.90 -92.71 -0.73 18.91 16 53 H 0.28 14.24 8.31 -92.71 -0.77 13.47 16 Total: -1.00 -71.29 415.97 -3.26 -74.55 By element: Atomic # 1 Polarization: 49.07 SS G_CDS: -1.09 Total: 47.98 kcal Atomic # 6 Polarization: 11.11 SS G_CDS: 6.86 Total: 17.97 kcal Atomic # 7 Polarization: -122.17 SS G_CDS: -10.97 Total: -133.13 kcal Atomic # 8 Polarization: -52.25 SS G_CDS: -0.10 Total: -52.34 kcal Atomic # 14 Polarization: 42.95 SS G_CDS: 2.03 Total: 44.97 kcal Total: -71.29 -3.26 -74.55 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001665839688.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.646 kcal (2) G-P(sol) polarization free energy of solvation -71.288 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.264 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.552 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.198 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds