Wall clock time and date at job start Sat Apr 11 2020 06:12:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47236 * 2 1 4 4 C 1.52998 * 109.47142 * 239.99698 * 2 1 3 5 5 C 1.53001 * 109.47150 * 120.00061 * 2 1 3 6 6 H 1.09006 * 109.46774 * 306.03186 * 5 2 1 7 7 N 1.46504 * 109.47048 * 66.02973 * 5 2 1 8 8 C 1.34773 * 119.99761 * 274.99620 * 7 5 2 9 9 N 1.34777 * 119.99775 * 179.97438 * 8 7 5 10 10 O 1.21586 * 120.00469 * 359.73423 * 8 7 5 11 11 C 1.50694 * 109.47241 * 186.03288 * 5 2 1 12 12 O 1.21288 * 120.00014 * 274.92298 * 11 5 2 13 13 N 1.34773 * 120.00253 * 94.92228 * 11 5 2 14 14 C 1.47020 * 125.65112 * 5.06570 * 13 11 5 15 15 C 1.54308 * 107.27960 * 180.96794 * 14 13 11 16 16 C 1.55157 * 102.86328 * 22.52626 * 15 14 13 17 17 H 1.08999 * 111.00548 * 82.37968 * 16 15 14 18 18 C 1.53006 * 111.03707 * 206.21577 * 16 15 14 19 19 C 1.52993 * 109.47146 * 287.21300 * 18 16 15 20 20 N 1.46495 * 109.47475 * 180.02562 * 19 18 16 21 21 C 1.36940 * 120.00460 * 179.97438 * 20 19 18 22 22 H 1.08002 * 119.99899 * 0.02562 * 21 20 19 23 23 C 1.38808 * 120.00202 * 179.97438 * 21 20 19 24 24 N 1.31624 * 119.99895 * 0.02562 * 23 21 20 25 25 Si 1.86797 * 120.00014 * 180.02562 * 23 21 20 26 26 H 1.48496 * 109.46983 * 359.97438 * 25 23 21 27 27 H 1.48501 * 109.47152 * 120.00399 * 25 23 21 28 28 H 1.48504 * 109.46800 * 240.00236 * 25 23 21 29 29 C 1.47432 * 125.64622 * 185.37174 * 13 11 5 30 30 H 1.09003 * 109.46842 * 300.00122 * 1 2 3 31 31 H 1.08998 * 109.46987 * 59.99739 * 1 2 3 32 32 H 1.08998 * 109.47377 * 180.02562 * 1 2 3 33 33 H 1.09004 * 109.46923 * 175.67629 * 3 2 1 34 34 H 1.08999 * 109.46884 * 295.67136 * 3 2 1 35 35 H 1.08999 * 109.47136 * 55.67217 * 3 2 1 36 36 H 1.08998 * 109.47191 * 300.00367 * 4 2 1 37 37 H 1.09001 * 109.47217 * 60.00331 * 4 2 1 38 38 H 1.08994 * 109.47271 * 180.02562 * 4 2 1 39 39 H 0.96998 * 120.00057 * 95.00582 * 7 5 2 40 40 H 0.96998 * 120.00043 * 0.02562 * 9 8 7 41 41 H 0.97004 * 119.99909 * 180.02562 * 9 8 7 42 42 H 1.09004 * 109.87617 * 300.51455 * 14 13 11 43 43 H 1.09002 * 109.88253 * 61.67055 * 14 13 11 44 44 H 1.08999 * 110.92261 * 264.11167 * 15 14 13 45 45 H 1.09004 * 110.74258 * 140.85581 * 15 14 13 46 46 H 1.08997 * 109.47055 * 47.21340 * 18 16 15 47 47 H 1.08997 * 109.46979 * 167.21211 * 18 16 15 48 48 H 1.09005 * 109.47319 * 300.00166 * 19 18 16 49 49 H 1.09003 * 109.46877 * 59.99865 * 19 18 16 50 50 H 0.97001 * 119.99506 * 0.02562 * 20 19 18 51 51 H 0.97003 * 119.99955 * 179.97438 * 24 23 21 52 52 H 1.08996 * 110.36693 * 274.66829 * 29 13 11 53 53 H 1.08990 * 110.36686 * 36.88834 * 29 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 2.0400 -0.7213 1.2492 6 1 1.5911 -0.2735 2.1360 7 7 1.6737 -2.1380 1.1789 8 6 0.4586 -2.5416 1.5997 9 7 0.1215 -3.8449 1.5344 10 8 -0.3318 -1.7306 2.0422 11 6 3.5395 -0.5933 1.3262 12 8 4.2465 -1.3769 0.7286 13 7 4.0951 0.3920 2.0590 14 6 3.3653 1.3407 2.9127 15 6 4.4074 2.2955 3.5318 16 6 5.5996 2.1929 2.5442 17 1 5.4500 2.8430 1.6822 18 6 6.9221 2.5115 3.2447 19 6 7.0024 4.0136 3.5238 20 7 8.2689 4.3188 4.1939 21 6 8.5646 5.6091 4.5444 22 1 7.8640 6.4018 4.3271 23 6 9.7644 5.8981 5.1798 24 7 10.6181 4.9320 5.4451 25 14 10.1675 7.6582 5.6585 26 1 9.0516 8.5496 5.2519 27 1 10.3567 7.7403 7.1291 28 1 11.4149 8.0839 4.9744 29 6 5.5348 0.7009 2.1324 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3634 -1.0276 0.0005 33 1 3.1273 1.4434 0.0775 34 1 1.7414 1.9334 -0.9262 35 1 1.6148 1.9782 0.8487 36 1 1.6766 -1.7489 -1.2492 37 1 1.6767 -0.2075 -2.1392 38 1 3.1299 -0.7217 -1.2490 39 1 2.3058 -2.7856 0.8296 40 1 0.7535 -4.4924 1.1850 41 1 -0.7532 -4.1353 1.8370 42 1 2.6519 1.9059 2.3130 43 1 2.8431 0.8019 3.7034 44 1 4.7006 1.9597 4.5265 45 1 4.0233 3.3150 3.5681 46 1 6.9761 1.9637 4.1854 47 1 7.7529 2.2160 2.6040 48 1 6.9484 4.5614 2.5830 49 1 6.1715 4.3090 4.1645 50 1 8.8983 3.6069 4.3887 51 1 11.4567 5.1340 5.8888 52 1 6.0185 0.0783 2.8850 53 1 6.0045 0.5533 1.1600 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001672897549.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:12:50 Heat of formation + Delta-G solvation = -90.241532 kcal Electronic energy + Delta-G solvation = -31019.914509 eV Core-core repulsion = 26925.331835 eV Total energy + Delta-G solvation = -4094.582674 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.226 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.12973 -40.63772 -39.10925 -37.75092 -36.84178 -35.04640 -34.55126 -33.90642 -32.65474 -30.63492 -29.65756 -28.20056 -28.04929 -27.71983 -25.62068 -24.06100 -23.10089 -22.29005 -21.28499 -21.04394 -19.81460 -19.41448 -19.10489 -18.32753 -17.74546 -17.56860 -16.79431 -16.63687 -16.54622 -15.90388 -15.66743 -15.39338 -15.30716 -15.19758 -15.07113 -14.74721 -14.51249 -14.33193 -14.16184 -13.80736 -13.63749 -13.37283 -13.11560 -13.03518 -12.92636 -12.84739 -12.75711 -12.55838 -12.34993 -12.30209 -12.12457 -11.96444 -11.92999 -11.75554 -11.57437 -11.50718 -11.47698 -11.37508 -10.93086 -10.90983 -10.59849 -10.03252 -9.70674 -8.97843 -7.94416 -5.23044 1.30257 1.48452 1.49201 1.59336 1.61205 2.10941 2.23190 2.57151 3.23233 3.39733 3.53600 3.59967 3.65607 3.69417 3.80564 3.83356 4.04318 4.17714 4.23995 4.31479 4.36644 4.46228 4.48927 4.59499 4.61715 4.71197 4.77798 4.80088 4.83313 4.88991 4.89662 4.96632 5.00194 5.02857 5.06779 5.11192 5.20605 5.21706 5.29463 5.33591 5.40501 5.41721 5.47318 5.48897 5.52215 5.82088 6.05479 6.28774 6.38575 6.92943 7.01643 7.34420 7.63841 8.12340 8.33641 9.29553 Molecular weight = 340.23amu Principal moments of inertia in cm(-1) A = 0.025350 B = 0.001938 C = 0.001917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1104.259131 B =14446.703772 C =14605.512467 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.068 4.068 3 C -0.150 4.150 4 C -0.136 4.136 5 C 0.165 3.835 6 H 0.104 0.896 7 N -0.724 5.724 8 C 0.705 3.295 9 N -0.849 5.849 10 O -0.622 6.622 11 C 0.531 3.469 12 O -0.565 6.565 13 N -0.609 5.609 14 C 0.090 3.910 15 C -0.123 4.123 16 C -0.083 4.083 17 H 0.093 0.907 18 C -0.102 4.102 19 C 0.153 3.847 20 N -0.751 5.751 21 C -0.242 4.242 22 H 0.078 0.922 23 C -0.080 4.080 24 N -0.971 5.971 25 Si 0.974 3.026 26 H -0.264 1.264 27 H -0.293 1.293 28 H -0.294 1.294 29 C 0.113 3.887 30 H 0.053 0.947 31 H 0.060 0.940 32 H 0.049 0.951 33 H 0.050 0.950 34 H 0.072 0.928 35 H 0.072 0.928 36 H 0.057 0.943 37 H 0.065 0.935 38 H 0.046 0.954 39 H 0.409 0.591 40 H 0.412 0.588 41 H 0.423 0.577 42 H 0.093 0.907 43 H 0.079 0.921 44 H 0.077 0.923 45 H 0.098 0.902 46 H 0.062 0.938 47 H 0.058 0.942 48 H 0.019 0.981 49 H 0.029 0.971 50 H 0.373 0.627 51 H 0.251 0.749 52 H 0.067 0.933 53 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.679 -16.914 -12.152 32.293 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.070 4.070 3 C -0.207 4.207 4 C -0.194 4.194 5 C 0.055 3.945 6 H 0.121 0.879 7 N -0.382 5.382 8 C 0.403 3.597 9 N -0.418 5.418 10 O -0.503 6.503 11 C 0.319 3.681 12 O -0.444 6.444 13 N -0.341 5.341 14 C -0.032 4.032 15 C -0.161 4.161 16 C -0.103 4.103 17 H 0.111 0.889 18 C -0.140 4.140 19 C 0.027 3.973 20 N -0.393 5.393 21 C -0.374 4.374 22 H 0.095 0.905 23 C -0.272 4.272 24 N -0.622 5.622 25 Si 0.803 3.197 26 H -0.188 1.188 27 H -0.221 1.221 28 H -0.222 1.222 29 C -0.010 4.010 30 H 0.072 0.928 31 H 0.079 0.921 32 H 0.068 0.932 33 H 0.069 0.931 34 H 0.091 0.909 35 H 0.091 0.909 36 H 0.076 0.924 37 H 0.084 0.916 38 H 0.065 0.935 39 H 0.246 0.754 40 H 0.242 0.758 41 H 0.256 0.744 42 H 0.111 0.889 43 H 0.097 0.903 44 H 0.096 0.904 45 H 0.116 0.884 46 H 0.081 0.919 47 H 0.077 0.923 48 H 0.037 0.963 49 H 0.046 0.954 50 H 0.204 0.796 51 H 0.059 0.941 52 H 0.085 0.915 53 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -24.954 -16.432 -12.153 32.256 hybrid contribution 1.289 -0.199 0.349 1.350 sum -23.666 -16.632 -11.805 31.241 Atomic orbital electron populations 1.21763 0.92461 1.01908 1.01565 1.20863 0.96961 0.95677 0.93466 1.22076 1.00758 0.94324 1.03570 1.21815 1.00641 1.00374 0.96552 1.20682 0.89747 0.82852 1.01181 0.87861 1.44723 1.16135 1.08445 1.68870 1.15978 0.81746 0.83743 0.78226 1.42804 1.22162 1.06007 1.70831 1.90966 1.51787 1.53584 1.53980 1.20374 0.90382 0.79596 0.77712 1.90684 1.64356 1.42747 1.46644 1.48508 1.08625 1.31780 1.45209 1.22464 0.95681 0.91002 0.94044 1.22735 0.94084 1.00565 0.98693 1.22176 0.94451 0.94655 0.98981 0.88913 1.21494 0.96795 0.95491 1.00268 1.20807 0.87534 0.94327 0.94613 1.42658 1.19477 1.06193 1.70999 1.19701 1.01052 0.86831 1.29838 0.90452 1.25607 0.97407 1.01531 1.02688 1.69829 1.10698 1.32600 1.49103 0.85060 0.77705 0.79877 0.77055 1.18845 1.22056 1.22162 1.22259 0.81149 0.95783 1.01762 0.92825 0.92088 0.93235 0.93114 0.90859 0.90898 0.92424 0.91605 0.93471 0.75385 0.75821 0.74388 0.88878 0.90275 0.90438 0.88389 0.91898 0.92301 0.96326 0.95352 0.79588 0.94060 0.91477 0.91054 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.99 7.10 71.98 0.51 -1.48 16 2 C -0.07 -1.09 0.62 -52.18 -0.03 -1.12 16 3 C -0.15 -2.18 7.07 71.98 0.51 -1.67 16 4 C -0.14 -2.22 7.98 71.98 0.57 -1.65 16 5 C 0.17 2.96 1.66 44.24 0.07 3.03 16 6 H 0.10 1.95 6.42 -2.38 -0.02 1.94 16 7 N -0.72 -11.50 4.00 -461.41 -1.85 -13.35 16 8 C 0.70 11.78 7.44 179.06 1.33 13.11 16 9 N -0.85 -7.02 8.88 -184.75 -1.64 -8.66 16 10 O -0.62 -14.84 14.34 -3.99 -0.06 -14.90 16 11 C 0.53 11.38 5.22 87.66 0.46 11.84 16 12 O -0.57 -15.14 15.28 -3.06 -0.05 -15.18 16 13 N -0.61 -12.03 2.61 -811.81 -2.12 -14.15 16 14 C 0.09 1.40 5.65 86.72 0.49 1.89 16 15 C -0.12 -2.18 5.91 31.78 0.19 -1.99 16 16 C -0.08 -1.77 3.00 -9.40 -0.03 -1.80 16 17 H 0.09 1.91 8.14 -2.39 -0.02 1.89 16 18 C -0.10 -2.95 4.84 30.59 0.15 -2.80 16 19 C 0.15 5.73 6.16 86.38 0.53 6.26 16 20 N -0.75 -37.82 5.60 -343.46 -1.92 -39.75 16 21 C -0.24 -13.48 9.99 84.03 0.84 -12.64 16 22 H 0.08 4.11 7.83 -2.91 -0.02 4.08 16 23 C -0.08 -4.63 5.50 84.86 0.47 -4.16 16 24 N -0.97 -59.72 13.06 21.65 0.28 -59.44 16 25 Si 0.97 46.02 29.55 68.60 2.03 48.05 16 26 H -0.26 -11.63 7.11 99.48 0.71 -10.92 16 27 H -0.29 -13.84 7.11 99.48 0.71 -13.13 16 28 H -0.29 -13.93 7.11 99.48 0.71 -13.22 16 29 C 0.11 2.46 6.36 86.86 0.55 3.01 16 30 H 0.05 0.99 7.91 -2.39 -0.02 0.97 16 31 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 32 H 0.05 0.94 5.62 -2.39 -0.01 0.93 16 33 H 0.05 0.86 6.32 -2.39 -0.02 0.85 16 34 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 35 H 0.07 0.92 6.46 -2.39 -0.02 0.90 16 36 H 0.06 0.89 7.45 -2.39 -0.02 0.88 16 37 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 38 H 0.05 0.94 6.62 -2.39 -0.02 0.93 16 39 H 0.41 5.84 7.95 -92.71 -0.74 5.10 16 40 H 0.41 1.21 8.84 -92.71 -0.82 0.39 16 41 H 0.42 2.59 8.93 -92.70 -0.83 1.76 16 42 H 0.09 1.18 5.32 -2.38 -0.01 1.17 16 43 H 0.08 1.13 8.00 -2.39 -0.02 1.12 16 44 H 0.08 1.47 7.92 -2.39 -0.02 1.45 16 45 H 0.10 1.57 8.14 -2.38 -0.02 1.55 16 46 H 0.06 1.86 7.97 -2.39 -0.02 1.85 16 47 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 48 H 0.02 0.70 8.14 -2.38 -0.02 0.68 16 49 H 0.03 1.03 7.75 -2.39 -0.02 1.01 16 50 H 0.37 20.06 7.67 -92.71 -0.71 19.34 16 51 H 0.25 14.90 8.31 -92.71 -0.77 14.12 16 52 H 0.07 1.54 8.04 -2.39 -0.02 1.52 16 53 H 0.07 1.67 8.09 -2.39 -0.02 1.65 16 Total: -1.00 -73.42 405.57 -0.86 -74.28 By element: Atomic # 1 Polarization: 35.41 SS G_CDS: -2.14 Total: 33.27 kcal Atomic # 6 Polarization: 3.21 SS G_CDS: 6.61 Total: 9.82 kcal Atomic # 7 Polarization: -128.09 SS G_CDS: -7.25 Total: -135.34 kcal Atomic # 8 Polarization: -29.98 SS G_CDS: -0.10 Total: -30.08 kcal Atomic # 14 Polarization: 46.02 SS G_CDS: 2.03 Total: 48.05 kcal Total: -73.42 -0.86 -74.28 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001672897549.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.962 kcal (2) G-P(sol) polarization free energy of solvation -73.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.279 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.242 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds