Wall clock time and date at job start Sat Apr 11 2020 06:12:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47214 * 2 1 4 4 C 1.53009 * 109.46875 * 240.00043 * 2 1 3 5 5 C 1.52999 * 109.47345 * 120.00383 * 2 1 3 6 6 H 1.09008 * 109.46497 * 306.01537 * 5 2 1 7 7 N 1.46503 * 109.47241 * 66.00992 * 5 2 1 8 8 C 1.34774 * 120.00331 * 275.00592 * 7 5 2 9 9 N 1.34778 * 119.99887 * 180.02562 * 8 7 5 10 10 O 1.21582 * 119.99916 * 359.97438 * 8 7 5 11 11 C 1.50693 * 109.47097 * 186.01610 * 5 2 1 12 12 O 1.21283 * 120.00141 * 274.65884 * 11 5 2 13 13 N 1.34786 * 119.99968 * 94.66804 * 11 5 2 14 14 C 1.47020 * 125.64884 * 5.36338 * 13 11 5 15 15 C 1.54319 * 107.27036 * 178.90740 * 14 13 11 16 16 C 1.55155 * 102.94213 * 337.80522 * 15 14 13 17 17 H 1.08997 * 111.00872 * 277.38802 * 16 15 14 18 18 C 1.53000 * 111.00217 * 153.57454 * 16 15 14 19 19 C 1.53005 * 109.47142 * 66.45872 * 18 16 15 20 20 N 1.46503 * 109.47170 * 180.02562 * 19 18 16 21 21 C 1.36932 * 119.99578 * 180.02562 * 20 19 18 22 22 H 1.08000 * 120.00399 * 359.97438 * 21 20 19 23 23 C 1.38810 * 120.00014 * 179.97438 * 21 20 19 24 24 N 1.31618 * 119.99715 * 359.97438 * 23 21 20 25 25 Si 1.86803 * 120.00491 * 179.97438 * 23 21 20 26 26 H 1.48501 * 109.46922 * 60.00034 * 25 23 21 27 27 H 1.48493 * 109.47259 * 180.02562 * 25 23 21 28 28 H 1.48501 * 109.46954 * 299.99937 * 25 23 21 29 29 C 1.47424 * 125.64576 * 185.05952 * 13 11 5 30 30 H 1.09001 * 109.46933 * 300.00062 * 1 2 3 31 31 H 1.08998 * 109.47195 * 59.99860 * 1 2 3 32 32 H 1.09002 * 109.47186 * 179.97438 * 1 2 3 33 33 H 1.08997 * 109.47163 * 175.69392 * 3 2 1 34 34 H 1.09001 * 109.46727 * 295.69276 * 3 2 1 35 35 H 1.08994 * 109.47059 * 55.68862 * 3 2 1 36 36 H 1.08993 * 109.46912 * 300.00005 * 4 2 1 37 37 H 1.08998 * 109.47130 * 60.00057 * 4 2 1 38 38 H 1.09000 * 109.46834 * 180.02562 * 4 2 1 39 39 H 0.96996 * 119.99139 * 95.00317 * 7 5 2 40 40 H 0.97001 * 119.99791 * 0.02562 * 9 8 7 41 41 H 0.96999 * 119.99630 * 179.72400 * 9 8 7 42 42 H 1.09006 * 109.87949 * 298.32383 * 14 13 11 43 43 H 1.08998 * 109.87895 * 59.33485 * 14 13 11 44 44 H 1.09005 * 110.71976 * 96.17131 * 15 14 13 45 45 H 1.08998 * 110.72054 * 219.26296 * 15 14 13 46 46 H 1.08997 * 109.47372 * 186.45157 * 18 16 15 47 47 H 1.09001 * 109.47441 * 306.45575 * 18 16 15 48 48 H 1.09005 * 109.46638 * 300.00106 * 19 18 16 49 49 H 1.09001 * 109.47195 * 59.99552 * 19 18 16 50 50 H 0.96990 * 120.00228 * 359.97438 * 20 19 18 51 51 H 0.97001 * 120.00050 * 179.97438 * 24 23 21 52 52 H 1.09002 * 110.36880 * 322.99970 * 29 13 11 53 53 H 1.09001 * 110.36465 * 85.32404 * 29 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 2.0400 -0.7213 1.2492 6 1 1.5914 -0.2734 2.1359 7 7 1.6734 -2.1380 1.1790 8 6 0.4582 -2.5413 1.5998 9 7 0.1212 -3.8447 1.5357 10 8 -0.3336 -1.7294 2.0382 11 6 3.5396 -0.5936 1.3258 12 8 4.2463 -1.3803 0.7321 13 7 4.0954 0.3947 2.0544 14 6 3.3663 1.3436 2.9086 15 6 4.4135 2.2693 3.5627 16 6 5.7166 1.4310 3.4827 17 1 5.7739 0.7182 4.3053 18 6 6.9501 2.3358 3.4581 19 6 7.0768 3.0619 4.7990 20 7 8.2576 3.9288 4.7753 21 6 8.5758 4.6823 5.8735 22 1 7.9562 4.6378 6.7569 23 6 9.6949 5.5033 5.8513 24 7 10.4503 5.5571 4.7749 25 14 10.1287 6.5318 7.3492 26 1 10.3622 5.6384 8.5122 27 1 11.3589 7.3158 7.0718 28 1 9.0095 7.4590 7.6540 29 6 5.5358 0.6994 2.1318 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 -1.0277 -0.0005 33 1 3.1272 1.4434 0.0772 34 1 1.7410 1.9335 -0.9261 35 1 1.6150 1.9781 0.8488 36 1 1.6766 -1.7489 -1.2493 37 1 1.6766 -0.2075 -2.1393 38 1 3.1299 -0.7217 -1.2491 39 1 2.3053 -2.7856 0.8296 40 1 0.7534 -4.4925 1.1870 41 1 -0.7519 -4.1355 1.8424 42 1 2.6770 1.9328 2.3036 43 1 2.8149 0.8022 3.6773 44 1 4.5157 3.1959 2.9978 45 1 4.1494 2.4785 4.5993 46 1 7.8408 1.7314 3.2869 47 1 6.8481 3.0677 2.6569 48 1 6.1860 3.6664 4.9703 49 1 7.1789 2.3300 5.6003 50 1 8.8143 3.9685 3.9821 51 1 11.2321 6.1311 4.7592 52 1 6.1195 -0.2211 2.1172 53 1 5.8307 1.3497 1.3083 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001672897551.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:12:55 Heat of formation + Delta-G solvation = -89.977487 kcal Electronic energy + Delta-G solvation = -30995.890529 eV Core-core repulsion = 26901.319305 eV Total energy + Delta-G solvation = -4094.571224 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.226 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.12849 -40.64035 -39.12511 -37.75213 -36.83718 -35.04741 -34.55704 -33.90570 -32.64987 -30.63256 -29.66636 -28.20390 -28.03512 -27.73919 -25.61508 -24.04875 -23.15216 -22.28890 -21.24201 -21.04789 -19.81297 -19.41251 -19.09049 -18.40865 -17.75363 -17.39197 -17.02615 -16.66336 -16.17156 -16.09104 -15.79889 -15.39464 -15.22566 -15.20506 -15.16947 -14.68519 -14.41604 -14.33309 -14.21153 -13.86004 -13.57609 -13.36481 -13.11039 -13.04752 -12.91514 -12.85853 -12.72524 -12.60179 -12.34572 -12.26956 -12.21460 -11.95351 -11.93843 -11.76184 -11.61497 -11.51893 -11.44036 -11.36998 -10.93269 -10.88765 -10.59569 -10.03088 -9.70596 -8.97758 -7.93798 -5.22561 1.30056 1.48396 1.51536 1.57630 1.61746 2.10842 2.23238 2.57562 3.22676 3.39824 3.53400 3.60230 3.67132 3.68424 3.80630 3.82425 4.03329 4.17831 4.21854 4.33642 4.36496 4.45959 4.49167 4.59758 4.61083 4.70391 4.77488 4.80110 4.83001 4.87720 4.89624 4.95642 4.99391 5.02216 5.07247 5.11139 5.19118 5.23387 5.28667 5.32911 5.39864 5.41295 5.47023 5.48480 5.51554 5.82299 6.05659 6.28935 6.38509 6.93008 7.01872 7.34748 7.64050 8.12595 8.34260 9.29653 Molecular weight = 340.23amu Principal moments of inertia in cm(-1) A = 0.024206 B = 0.001940 C = 0.001921 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1156.482714 B =14426.932554 C =14573.409818 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.068 4.068 3 C -0.150 4.150 4 C -0.136 4.136 5 C 0.165 3.835 6 H 0.104 0.896 7 N -0.724 5.724 8 C 0.705 3.295 9 N -0.849 5.849 10 O -0.622 6.622 11 C 0.531 3.469 12 O -0.565 6.565 13 N -0.608 5.608 14 C 0.090 3.910 15 C -0.123 4.123 16 C -0.085 4.085 17 H 0.086 0.914 18 C -0.101 4.101 19 C 0.153 3.847 20 N -0.750 5.750 21 C -0.245 4.245 22 H 0.076 0.924 23 C -0.079 4.079 24 N -0.970 5.970 25 Si 0.974 3.026 26 H -0.278 1.278 27 H -0.296 1.296 28 H -0.276 1.276 29 C 0.113 3.887 30 H 0.053 0.947 31 H 0.060 0.940 32 H 0.049 0.951 33 H 0.049 0.951 34 H 0.072 0.928 35 H 0.072 0.928 36 H 0.057 0.943 37 H 0.065 0.935 38 H 0.046 0.954 39 H 0.409 0.591 40 H 0.412 0.588 41 H 0.423 0.577 42 H 0.092 0.908 43 H 0.080 0.920 44 H 0.082 0.918 45 H 0.094 0.906 46 H 0.058 0.942 47 H 0.065 0.935 48 H 0.030 0.970 49 H 0.016 0.984 50 H 0.373 0.627 51 H 0.251 0.749 52 H 0.069 0.931 53 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.071 -18.045 -11.175 32.092 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.070 4.070 3 C -0.207 4.207 4 C -0.194 4.194 5 C 0.055 3.945 6 H 0.122 0.878 7 N -0.382 5.382 8 C 0.403 3.597 9 N -0.418 5.418 10 O -0.503 6.503 11 C 0.320 3.680 12 O -0.444 6.444 13 N -0.341 5.341 14 C -0.032 4.032 15 C -0.160 4.160 16 C -0.104 4.104 17 H 0.105 0.895 18 C -0.140 4.140 19 C 0.027 3.973 20 N -0.393 5.393 21 C -0.377 4.377 22 H 0.094 0.906 23 C -0.271 4.271 24 N -0.621 5.621 25 Si 0.803 3.197 26 H -0.204 1.204 27 H -0.222 1.222 28 H -0.202 1.202 29 C -0.010 4.010 30 H 0.072 0.928 31 H 0.079 0.921 32 H 0.068 0.932 33 H 0.068 0.932 34 H 0.091 0.909 35 H 0.091 0.909 36 H 0.076 0.924 37 H 0.084 0.916 38 H 0.065 0.935 39 H 0.246 0.754 40 H 0.242 0.758 41 H 0.256 0.744 42 H 0.110 0.890 43 H 0.098 0.902 44 H 0.100 0.900 45 H 0.113 0.887 46 H 0.077 0.923 47 H 0.084 0.916 48 H 0.048 0.952 49 H 0.034 0.966 50 H 0.205 0.795 51 H 0.060 0.940 52 H 0.088 0.912 53 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -24.323 -17.689 -11.012 32.028 hybrid contribution 1.218 -0.103 0.286 1.255 sum -23.105 -17.792 -10.726 31.072 Atomic orbital electron populations 1.21763 0.92444 1.01931 1.01547 1.20866 0.96981 0.95628 0.93512 1.22073 1.00698 0.94392 1.03558 1.21816 1.00627 1.00391 0.96536 1.20675 0.89758 0.82866 1.01155 0.87848 1.44717 1.16150 1.08428 1.68857 1.15977 0.81747 0.83754 0.78217 1.42803 1.22275 1.05985 1.70738 1.90966 1.51686 1.53518 1.54133 1.20368 0.90383 0.79432 0.77848 1.90681 1.64355 1.42755 1.46637 1.48502 1.08598 1.31556 1.45460 1.22463 0.95609 0.91125 0.93990 1.22726 0.92788 0.97920 1.02604 1.22119 0.94612 0.97002 0.96702 0.89523 1.21482 0.97298 0.97913 0.97260 1.20807 0.88927 0.91772 0.95799 1.42633 1.29855 1.50987 1.15813 1.19616 1.06931 1.16986 0.94203 0.90572 1.25606 0.98444 1.02551 1.00518 1.69811 1.18528 1.44009 1.29770 0.85197 0.77001 0.78497 0.78990 1.20425 1.22230 1.20218 1.22222 0.81043 0.99841 0.97878 0.92829 0.92119 0.93192 0.93186 0.90871 0.90933 0.92387 0.91612 0.93483 0.75379 0.75820 0.74391 0.89007 0.90177 0.89955 0.88746 0.92341 0.91628 0.95243 0.96595 0.79546 0.94031 0.91208 0.90916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.00 7.10 71.98 0.51 -1.49 16 2 C -0.07 -1.10 0.62 -52.18 -0.03 -1.13 16 3 C -0.15 -2.22 7.06 71.98 0.51 -1.71 16 4 C -0.14 -2.23 7.98 71.99 0.57 -1.65 16 5 C 0.17 2.96 1.66 44.24 0.07 3.04 16 6 H 0.10 1.96 6.38 -2.38 -0.02 1.95 16 7 N -0.72 -11.49 4.00 -461.41 -1.85 -13.34 16 8 C 0.70 11.77 7.45 179.05 1.33 13.11 16 9 N -0.85 -7.01 8.88 -184.75 -1.64 -8.65 16 10 O -0.62 -14.84 14.32 -3.97 -0.06 -14.89 16 11 C 0.53 11.39 5.23 87.65 0.46 11.85 16 12 O -0.57 -15.11 15.22 -3.04 -0.05 -15.15 16 13 N -0.61 -12.05 2.60 -812.23 -2.11 -14.17 16 14 C 0.09 1.42 5.68 86.73 0.49 1.91 16 15 C -0.12 -2.21 5.59 31.78 0.18 -2.03 16 16 C -0.08 -1.85 3.06 -9.48 -0.03 -1.88 16 17 H 0.09 1.90 8.14 -2.39 -0.02 1.88 16 18 C -0.10 -2.94 4.84 30.60 0.15 -2.79 16 19 C 0.15 5.76 6.11 86.38 0.53 6.29 16 20 N -0.75 -37.87 5.60 -343.43 -1.92 -39.80 16 21 C -0.25 -13.69 9.99 84.03 0.84 -12.85 16 22 H 0.08 4.05 7.83 -2.91 -0.02 4.02 16 23 C -0.08 -4.55 5.50 84.86 0.47 -4.09 16 24 N -0.97 -59.55 13.06 21.65 0.28 -59.27 16 25 Si 0.97 45.98 29.55 68.60 2.03 48.01 16 26 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 27 H -0.30 -14.09 7.11 99.48 0.71 -13.38 16 28 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 29 C 0.11 2.45 6.40 86.78 0.56 3.01 16 30 H 0.05 1.00 7.90 -2.39 -0.02 0.98 16 31 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 32 H 0.05 0.95 5.62 -2.39 -0.01 0.94 16 33 H 0.05 0.87 6.30 -2.39 -0.02 0.85 16 34 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 35 H 0.07 0.94 6.48 -2.39 -0.02 0.92 16 36 H 0.06 0.90 7.45 -2.39 -0.02 0.88 16 37 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 38 H 0.05 0.94 6.63 -2.39 -0.02 0.93 16 39 H 0.41 5.82 7.94 -92.71 -0.74 5.09 16 40 H 0.41 1.20 8.84 -92.71 -0.82 0.38 16 41 H 0.42 2.59 8.93 -92.71 -0.83 1.76 16 42 H 0.09 1.20 5.35 -2.38 -0.01 1.19 16 43 H 0.08 1.14 7.92 -2.39 -0.02 1.12 16 44 H 0.08 1.53 8.01 -2.38 -0.02 1.51 16 45 H 0.09 1.60 8.13 -2.39 -0.02 1.58 16 46 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 47 H 0.07 1.92 8.11 -2.39 -0.02 1.90 16 48 H 0.03 1.07 7.51 -2.38 -0.02 1.05 16 49 H 0.02 0.61 8.14 -2.39 -0.02 0.59 16 50 H 0.37 20.06 7.67 -92.72 -0.71 19.35 16 51 H 0.25 14.95 8.31 -92.71 -0.77 14.18 16 52 H 0.07 1.67 7.99 -2.39 -0.02 1.65 16 53 H 0.07 1.59 8.03 -2.39 -0.02 1.57 16 Total: -1.00 -73.14 405.02 -0.85 -73.99 By element: Atomic # 1 Polarization: 35.84 SS G_CDS: -2.14 Total: 33.70 kcal Atomic # 6 Polarization: 2.96 SS G_CDS: 6.61 Total: 9.57 kcal Atomic # 7 Polarization: -127.97 SS G_CDS: -7.24 Total: -135.22 kcal Atomic # 8 Polarization: -29.94 SS G_CDS: -0.10 Total: -30.05 kcal Atomic # 14 Polarization: 45.98 SS G_CDS: 2.03 Total: 48.01 kcal Total: -73.14 -0.85 -73.99 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001672897551.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.989 kcal (2) G-P(sol) polarization free energy of solvation -73.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.989 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.977 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds