Wall clock time and date at job start Sat Apr 11 2020 06:11:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46997 * 2 1 4 4 C 1.53006 * 109.46623 * 179.97438 * 3 2 1 5 5 C 1.52999 * 109.46626 * 179.97438 * 4 3 2 6 6 H 1.08993 * 109.47768 * 305.00075 * 5 4 3 7 7 N 1.46501 * 109.47174 * 65.00624 * 5 4 3 8 8 C 1.34773 * 120.00297 * 59.99001 * 7 5 4 9 9 N 1.34772 * 120.00132 * 180.02562 * 8 7 5 10 10 O 1.21591 * 119.99875 * 0.02562 * 8 7 5 11 11 C 1.50709 * 109.46788 * 184.99743 * 5 4 3 12 12 O 1.21277 * 120.00001 * 260.00315 * 11 5 4 13 13 N 1.34778 * 119.99340 * 80.00361 * 11 5 4 14 14 C 1.47018 * 125.65332 * 0.02683 * 13 11 5 15 15 C 1.54323 * 107.27195 * 181.02278 * 14 13 11 16 16 H 1.09009 * 110.71814 * 263.82790 * 15 14 13 17 17 N 1.46496 * 110.71974 * 140.73273 * 15 14 13 18 18 C 1.36943 * 120.00296 * 86.45251 * 17 15 14 19 19 H 1.08001 * 119.99343 * 359.97438 * 18 17 15 20 20 C 1.38808 * 120.00183 * 179.97438 * 18 17 15 21 21 N 1.31621 * 119.99901 * 359.97438 * 20 18 17 22 22 Si 1.86797 * 120.00068 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.47158 * 90.00136 * 22 20 18 24 24 H 1.48497 * 109.47273 * 210.00135 * 22 20 18 25 25 H 1.48500 * 109.47202 * 330.00218 * 22 20 18 26 26 C 1.55152 * 102.94156 * 22.18726 * 15 14 13 27 27 C 1.53007 * 111.00408 * 82.57614 * 26 15 14 28 28 C 1.53004 * 111.00383 * 206.38521 * 26 15 14 29 29 C 1.47424 * 125.64484 * 179.71255 * 13 11 5 30 30 H 1.09000 * 109.46866 * 300.00212 * 1 2 3 31 31 H 1.08996 * 109.47261 * 59.99820 * 1 2 3 32 32 H 1.09001 * 109.47377 * 180.02562 * 1 2 3 33 33 H 1.09000 * 109.46866 * 239.99788 * 2 1 3 34 34 H 1.09001 * 109.46611 * 119.99905 * 2 1 3 35 35 H 1.09000 * 109.47486 * 60.00167 * 3 2 1 36 36 H 1.09001 * 109.47362 * 299.99445 * 3 2 1 37 37 H 1.08993 * 109.46955 * 300.00075 * 4 3 2 38 38 H 1.09000 * 109.47050 * 59.99904 * 4 3 2 39 39 H 0.97007 * 120.00043 * 239.99805 * 7 5 4 40 40 H 0.97002 * 120.00228 * 359.97438 * 9 8 7 41 41 H 0.97001 * 120.00517 * 180.02562 * 9 8 7 42 42 H 1.09003 * 109.88242 * 300.44052 * 14 13 11 43 43 H 1.09000 * 109.88327 * 61.44780 * 14 13 11 44 44 H 0.97005 * 120.00026 * 266.44923 * 17 15 14 45 45 H 0.97000 * 119.99902 * 179.97438 * 21 20 18 46 46 H 1.09008 * 109.47014 * 59.99214 * 27 26 15 47 47 H 1.08999 * 109.47462 * 179.97438 * 27 26 15 48 48 H 1.09001 * 109.46774 * 299.99839 * 27 26 15 49 49 H 1.08999 * 109.47044 * 60.00603 * 28 26 15 50 50 H 1.09001 * 109.47056 * 180.02562 * 28 26 15 51 51 H 1.09005 * 109.47026 * 300.00280 * 28 26 15 52 52 H 1.08997 * 110.37011 * 274.75216 * 29 13 11 53 53 H 1.08999 * 110.36625 * 37.07091 * 29 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5701 1.4424 0.0006 5 6 4.0801 2.8849 0.0000 6 1 3.6459 3.4235 -0.8422 7 7 3.6921 3.5406 1.2513 8 6 4.1160 3.0458 2.4311 9 7 3.7587 3.6487 3.5822 10 8 4.8209 2.0554 2.4568 11 6 5.5821 2.8866 -0.1231 12 8 6.2712 3.0401 0.8630 13 7 6.1594 2.7175 -1.3292 14 6 5.4471 2.5225 -2.6005 15 6 6.5143 2.3483 -3.7016 16 1 6.7049 3.2951 -4.2071 17 7 6.1037 1.3227 -4.6637 18 6 5.3114 1.6605 -5.7283 19 1 4.9889 2.6830 -5.8584 20 6 4.9228 0.6888 -6.6402 21 7 5.3164 -0.5572 -6.4819 22 14 3.8415 1.1494 -8.0921 23 1 4.6964 1.5346 -9.2436 24 1 2.9975 -0.0127 -8.4691 25 1 2.9709 2.2927 -7.7177 26 6 7.7642 1.8902 -2.9047 27 6 7.7189 0.3856 -2.6308 28 6 9.0520 2.2727 -3.6371 29 6 7.6098 2.7039 -1.5931 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3634 -1.0277 0.0005 33 1 1.8934 -0.5139 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 1.6767 1.9564 0.8900 36 1 1.6768 1.9563 -0.8900 37 1 3.9330 0.9287 0.8908 38 1 3.9338 0.9284 -0.8891 39 1 3.1299 4.3309 1.2308 40 1 3.1966 4.4390 3.5617 41 1 4.0641 3.2928 4.4313 42 1 4.8244 1.6297 -2.5433 43 1 4.8277 3.3931 -2.8157 44 1 6.3932 0.4043 -4.5467 45 1 5.0445 -1.2363 -7.1190 46 1 7.6898 -0.1553 -3.5768 47 1 8.6069 0.0911 -2.0714 48 1 6.8278 0.1489 -2.0495 49 1 9.0928 3.3551 -3.7591 50 1 9.9126 1.9395 -3.0570 51 1 9.0681 1.7957 -4.6171 52 1 7.9803 3.7200 -1.7284 53 1 8.1392 2.2117 -0.7773 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001677043021.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:45 Heat of formation + Delta-G solvation = -87.335560 kcal Electronic energy + Delta-G solvation = -32166.495005 eV Core-core repulsion = 28072.038344 eV Total energy + Delta-G solvation = -4094.456662 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.226 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.79445 -40.62358 -38.98824 -37.18887 -35.79554 -35.19458 -34.57249 -34.32661 -32.61008 -31.40750 -29.13561 -28.58322 -28.26566 -26.53278 -25.74383 -23.83777 -23.07101 -22.33927 -21.59829 -20.27761 -19.89605 -19.56723 -19.08126 -18.13861 -17.69038 -17.08011 -16.86018 -16.47206 -16.26703 -15.81903 -15.68023 -15.27924 -15.23603 -15.16124 -14.90354 -14.69270 -14.36910 -14.23712 -14.04808 -13.77140 -13.55350 -13.37566 -13.33766 -12.96614 -12.81412 -12.80564 -12.72812 -12.53448 -12.19497 -12.09604 -12.05409 -12.03142 -11.83520 -11.79570 -11.49208 -11.47155 -11.31555 -11.20165 -10.89939 -10.81091 -10.45365 -9.88874 -9.52776 -8.97880 -7.87944 -5.16661 1.53794 1.54304 1.61842 1.62341 1.80209 2.19932 2.46922 2.62336 3.35981 3.43907 3.66175 3.70969 3.80305 3.84471 3.91727 3.96253 4.12606 4.18802 4.22266 4.34027 4.40732 4.43982 4.45813 4.52970 4.67085 4.78593 4.80143 4.82571 4.85788 4.91981 4.97992 4.99316 5.03854 5.08568 5.17063 5.19085 5.25734 5.29924 5.33603 5.36502 5.42697 5.47179 5.49420 5.55857 5.61591 5.97778 6.12800 6.33047 6.60042 7.21343 7.23698 7.41608 7.86386 8.14740 8.38836 9.35269 Molecular weight = 340.23amu Principal moments of inertia in cm(-1) A = 0.009744 B = 0.003905 C = 0.003047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2872.840967 B = 7167.803966 C = 9185.705481 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.128 4.128 3 C -0.100 4.100 4 C -0.126 4.126 5 C 0.164 3.836 6 H 0.136 0.864 7 N -0.718 5.718 8 C 0.702 3.298 9 N -0.852 5.852 10 O -0.618 6.618 11 C 0.508 3.492 12 O -0.557 6.557 13 N -0.611 5.611 14 C 0.084 3.916 15 C 0.175 3.825 16 H 0.071 0.929 17 N -0.722 5.722 18 C -0.236 4.236 19 H 0.082 0.918 20 C -0.069 4.069 21 N -0.968 5.968 22 Si 0.965 3.035 23 H -0.292 1.292 24 H -0.303 1.303 25 H -0.265 1.265 26 C -0.078 4.078 27 C -0.124 4.124 28 C -0.124 4.124 29 C 0.123 3.877 30 H 0.061 0.939 31 H 0.058 0.942 32 H 0.054 0.946 33 H 0.049 0.951 34 H 0.050 0.950 35 H 0.071 0.929 36 H 0.075 0.925 37 H 0.062 0.938 38 H 0.060 0.940 39 H 0.418 0.582 40 H 0.412 0.588 41 H 0.417 0.583 42 H 0.058 0.942 43 H 0.078 0.922 44 H 0.379 0.621 45 H 0.249 0.751 46 H 0.050 0.950 47 H 0.065 0.935 48 H 0.037 0.963 49 H 0.069 0.931 50 H 0.068 0.932 51 H 0.048 0.952 52 H 0.080 0.920 53 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.404 11.360 15.527 20.276 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.166 4.166 3 C -0.137 4.137 4 C -0.165 4.165 5 C 0.054 3.946 6 H 0.154 0.846 7 N -0.376 5.376 8 C 0.400 3.600 9 N -0.422 5.422 10 O -0.497 6.497 11 C 0.295 3.705 12 O -0.435 6.435 13 N -0.346 5.346 14 C -0.042 4.042 15 C 0.064 3.936 16 H 0.089 0.911 17 N -0.363 5.363 18 C -0.368 4.368 19 H 0.100 0.900 20 C -0.262 4.262 21 N -0.619 5.619 22 Si 0.795 3.205 23 H -0.220 1.220 24 H -0.230 1.230 25 H -0.190 1.190 26 C -0.080 4.080 27 C -0.182 4.182 28 C -0.181 4.181 29 C 0.000 4.000 30 H 0.081 0.919 31 H 0.077 0.923 32 H 0.073 0.927 33 H 0.068 0.932 34 H 0.068 0.932 35 H 0.090 0.910 36 H 0.094 0.906 37 H 0.080 0.920 38 H 0.079 0.921 39 H 0.256 0.744 40 H 0.242 0.758 41 H 0.249 0.751 42 H 0.077 0.923 43 H 0.096 0.904 44 H 0.215 0.785 45 H 0.058 0.942 46 H 0.069 0.931 47 H 0.084 0.916 48 H 0.056 0.944 49 H 0.088 0.912 50 H 0.087 0.913 51 H 0.067 0.933 52 H 0.098 0.902 53 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -5.619 10.730 15.856 19.952 hybrid contribution -0.605 -0.191 -0.604 0.876 sum -6.224 10.539 15.251 19.555 Atomic orbital electron populations 1.21723 0.94424 1.01924 1.02259 1.21520 0.97015 0.96933 1.01131 1.21463 0.92390 0.97068 1.02815 1.21857 0.97777 0.94279 1.02537 1.20653 0.89705 0.96449 0.87814 0.84628 1.44502 1.56318 1.33715 1.03101 1.16153 0.79261 0.82803 0.81771 1.42740 1.58299 1.34577 1.06584 1.90945 1.42578 1.29490 1.86702 1.21167 0.91869 0.76205 0.81216 1.90700 1.65639 1.50318 1.36808 1.48513 1.07978 1.71174 1.06892 1.23063 0.97043 1.01098 0.83000 1.21369 0.90917 0.92882 0.88387 0.91148 1.42662 1.59597 1.07650 1.26373 1.19647 1.21651 0.94430 1.01036 0.89974 1.25442 1.03148 0.95536 1.02027 1.69811 1.51558 1.01516 1.38998 0.85263 0.78534 0.76765 0.79926 1.21963 1.22970 1.18971 1.21957 0.96660 0.95223 0.94134 1.21547 1.01018 0.94817 1.00798 1.21608 0.94969 1.01887 0.99677 1.22293 0.81417 1.00055 0.96265 0.91949 0.92253 0.92701 0.93169 0.93157 0.91026 0.90589 0.91967 0.92125 0.74438 0.75770 0.75118 0.92334 0.90409 0.78538 0.94249 0.93087 0.91648 0.94428 0.91202 0.91300 0.93285 0.90162 0.92038 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.65 9.91 71.98 0.71 -1.93 16 2 C -0.13 -2.89 5.93 30.60 0.18 -2.71 16 3 C -0.10 -2.10 5.10 30.60 0.16 -1.94 16 4 C -0.13 -3.43 4.53 30.60 0.14 -3.30 16 5 C 0.16 4.08 2.43 44.25 0.11 4.19 16 6 H 0.14 2.58 7.52 -2.39 -0.02 2.57 16 7 N -0.72 -14.55 4.66 -461.41 -2.15 -16.70 16 8 C 0.70 18.20 7.59 179.06 1.36 19.56 16 9 N -0.85 -13.11 8.88 -184.75 -1.64 -14.75 16 10 O -0.62 -23.39 13.03 18.46 0.24 -23.15 16 11 C 0.51 16.78 6.84 87.66 0.60 17.38 16 12 O -0.56 -22.65 13.93 19.44 0.27 -22.38 16 13 N -0.61 -19.19 3.31 -811.37 -2.69 -21.88 16 14 C 0.08 2.66 5.61 86.73 0.49 3.15 16 15 C 0.17 6.19 2.84 46.18 0.13 6.32 16 16 H 0.07 2.44 8.02 -2.38 -0.02 2.42 16 17 N -0.72 -32.80 5.08 -317.33 -1.61 -34.41 16 18 C -0.24 -11.86 9.98 84.03 0.84 -11.02 16 19 H 0.08 3.88 7.83 -2.91 -0.02 3.86 16 20 C -0.07 -3.71 5.50 84.86 0.47 -3.24 16 21 N -0.97 -56.52 13.06 21.65 0.28 -56.24 16 22 Si 0.97 43.54 29.55 68.60 2.03 45.57 16 23 H -0.29 -13.16 7.11 99.48 0.71 -12.45 16 24 H -0.30 -14.08 7.11 99.48 0.71 -13.37 16 25 H -0.27 -11.09 7.11 99.48 0.71 -10.38 16 26 C -0.08 -2.45 0.87 -50.71 -0.04 -2.49 16 27 C -0.12 -4.24 7.95 71.98 0.57 -3.67 16 28 C -0.12 -3.39 8.68 71.98 0.62 -2.76 16 29 C 0.12 3.70 5.85 86.93 0.51 4.21 16 30 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 31 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 32 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 33 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 34 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 35 H 0.07 1.33 7.75 -2.39 -0.02 1.31 16 36 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 37 H 0.06 2.12 6.04 -2.39 -0.01 2.11 16 38 H 0.06 1.87 6.61 -2.39 -0.02 1.85 16 39 H 0.42 4.75 8.84 -92.70 -0.82 3.93 16 40 H 0.41 2.95 8.84 -92.71 -0.82 2.13 16 41 H 0.42 6.00 8.93 -92.71 -0.83 5.17 16 42 H 0.06 2.09 6.57 -2.39 -0.02 2.08 16 43 H 0.08 2.16 7.93 -2.39 -0.02 2.14 16 44 H 0.38 18.90 5.28 -92.70 -0.49 18.41 16 45 H 0.25 14.28 8.31 -92.71 -0.77 13.51 16 46 H 0.05 1.96 6.35 -2.38 -0.02 1.94 16 47 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 48 H 0.04 1.38 7.91 -2.39 -0.02 1.36 16 49 H 0.07 1.67 8.07 -2.39 -0.02 1.65 16 50 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 51 H 0.05 1.53 8.14 -2.38 -0.02 1.52 16 52 H 0.08 2.16 7.99 -2.39 -0.02 2.14 16 53 H 0.06 2.01 7.95 -2.39 -0.02 1.99 16 Total: -1.00 -75.59 412.47 -0.44 -76.03 By element: Atomic # 1 Polarization: 48.21 SS G_CDS: -2.02 Total: 46.19 kcal Atomic # 6 Polarization: 14.88 SS G_CDS: 6.84 Total: 21.72 kcal Atomic # 7 Polarization: -136.17 SS G_CDS: -7.80 Total: -143.97 kcal Atomic # 8 Polarization: -46.04 SS G_CDS: 0.51 Total: -45.53 kcal Atomic # 14 Polarization: 43.54 SS G_CDS: 2.03 Total: 45.57 kcal Total: -75.59 -0.44 -76.03 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001677043021.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.306 kcal (2) G-P(sol) polarization free energy of solvation -75.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.894 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.441 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.029 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.336 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds