Wall clock time and date at job start Sat Apr 11 2020 06:11:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52989 * 109.47186 * 2 1 4 4 C 1.52997 * 109.47290 * 179.97438 * 3 2 1 5 5 C 1.53002 * 109.47469 * 179.97438 * 4 3 2 6 6 H 1.09002 * 109.47070 * 305.00072 * 5 4 3 7 7 N 1.46499 * 109.46799 * 65.00172 * 5 4 3 8 8 C 1.34777 * 120.00580 * 60.00033 * 7 5 4 9 9 N 1.34767 * 120.00298 * 180.02562 * 8 7 5 10 10 O 1.21592 * 119.99319 * 359.97438 * 8 7 5 11 11 C 1.50701 * 109.47419 * 184.99997 * 5 4 3 12 12 O 1.21279 * 119.99756 * 260.00485 * 11 5 4 13 13 N 1.34771 * 120.00127 * 80.00012 * 11 5 4 14 14 C 1.47029 * 125.64778 * 0.02562 * 13 11 5 15 15 C 1.54321 * 107.27112 * 181.01910 * 14 13 11 16 16 H 1.09006 * 110.71639 * 140.55851 * 15 14 13 17 17 N 1.46491 * 110.72558 * 263.65595 * 15 14 13 18 18 C 1.36946 * 119.99891 * 273.55051 * 17 15 14 19 19 H 1.07999 * 119.99852 * 359.97438 * 18 17 15 20 20 C 1.38817 * 119.99756 * 179.97438 * 18 17 15 21 21 N 1.31615 * 119.99991 * 0.02562 * 20 18 17 22 22 Si 1.86797 * 119.99693 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.47337 * 0.02562 * 22 20 18 24 24 H 1.48498 * 109.47120 * 120.00337 * 22 20 18 25 25 H 1.48502 * 109.47129 * 240.00406 * 22 20 18 26 26 C 1.55157 * 102.94013 * 22.19910 * 15 14 13 27 27 C 1.53001 * 111.00675 * 82.56921 * 26 15 14 28 28 C 1.53000 * 111.00374 * 206.38069 * 26 15 14 29 29 C 1.47418 * 125.65014 * 179.71910 * 13 11 5 30 30 H 1.09001 * 109.46897 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47123 * 300.00459 * 1 2 3 32 32 H 1.08997 * 109.46584 * 60.00721 * 1 2 3 33 33 H 1.08999 * 109.47123 * 239.99541 * 2 1 3 34 34 H 1.09006 * 109.46782 * 120.00077 * 2 1 3 35 35 H 1.08997 * 109.47705 * 59.99275 * 3 2 1 36 36 H 1.09006 * 109.47323 * 299.99746 * 3 2 1 37 37 H 1.09008 * 109.47149 * 59.99652 * 4 3 2 38 38 H 1.08997 * 109.47163 * 299.99722 * 4 3 2 39 39 H 0.97002 * 120.00016 * 239.99724 * 7 5 4 40 40 H 0.97002 * 120.00298 * 359.97438 * 9 8 7 41 41 H 0.97007 * 120.00023 * 180.02562 * 9 8 7 42 42 H 1.08999 * 109.88309 * 300.44149 * 14 13 11 43 43 H 1.09004 * 109.87687 * 61.60522 * 14 13 11 44 44 H 0.96995 * 120.00515 * 93.54576 * 17 15 14 45 45 H 0.97003 * 119.99685 * 179.97438 * 21 20 18 46 46 H 1.09005 * 109.47074 * 59.99997 * 27 26 15 47 47 H 1.09001 * 109.46932 * 179.97438 * 27 26 15 48 48 H 1.08995 * 109.47120 * 299.99979 * 27 26 15 49 49 H 1.09006 * 109.47049 * 59.99751 * 28 26 15 50 50 H 1.09004 * 109.47652 * 179.97438 * 28 26 15 51 51 H 1.09001 * 109.47168 * 300.00412 * 28 26 15 52 52 H 1.08999 * 110.36531 * 274.74448 * 29 13 11 53 53 H 1.09004 * 110.36868 * 37.06624 * 29 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4424 0.0006 5 6 4.0801 2.8849 0.0000 6 1 3.6458 3.4235 -0.8423 7 7 3.6920 3.5406 1.2513 8 6 4.1160 3.0459 2.4311 9 7 3.7585 3.6488 3.5822 10 8 4.8202 2.0550 2.4569 11 6 5.5820 2.8867 -0.1232 12 8 6.2711 3.0401 0.8629 13 7 6.1595 2.7176 -1.3292 14 6 5.4471 2.5224 -2.6005 15 6 6.5143 2.3484 -3.7016 16 1 6.2103 1.5831 -4.4157 17 7 6.7674 3.6199 -4.3837 18 6 5.9860 3.9956 -5.4438 19 1 5.1834 3.3544 -5.7770 20 6 6.2255 5.2007 -6.0898 21 7 7.2039 5.9819 -5.6839 22 14 5.1601 5.7128 -7.5362 23 1 4.1374 4.6671 -7.7925 24 1 4.4854 6.9982 -7.2233 25 1 6.0102 5.8807 -8.7422 26 6 7.7642 1.8902 -2.9047 27 6 7.7188 0.3856 -2.6308 28 6 9.0520 2.2726 -3.6370 29 6 7.6098 2.7040 -1.5930 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8899 32 1 -0.3632 0.5137 -0.8901 33 1 1.8934 -0.5139 -0.8899 34 1 1.8933 -0.5139 0.8900 35 1 1.6767 1.9563 0.8899 36 1 1.6767 1.9563 -0.8900 37 1 3.9337 0.9284 -0.8891 38 1 3.9330 0.9288 0.8909 39 1 3.1299 4.3309 1.2307 40 1 3.1964 4.4390 3.5616 41 1 4.0640 3.2929 4.4313 42 1 4.8244 1.6297 -2.5433 43 1 4.8298 3.3943 -2.8170 44 1 7.4884 4.1957 -4.0846 45 1 7.3715 6.8238 -6.1357 46 1 7.6899 -0.1552 -3.5768 47 1 8.6068 0.0912 -2.0714 48 1 6.8277 0.1489 -2.0495 49 1 9.0928 3.3551 -3.7591 50 1 9.9126 1.9401 -3.0565 51 1 9.0681 1.7957 -4.6170 52 1 7.9802 3.7201 -1.7284 53 1 8.1392 2.2118 -0.7771 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001677043031.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:53 Heat of formation + Delta-G solvation = -88.787437 kcal Electronic energy + Delta-G solvation = -32113.703168 eV Core-core repulsion = 28019.183549 eV Total energy + Delta-G solvation = -4094.519620 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.226 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.78853 -40.63274 -38.97780 -37.15848 -35.67262 -35.17394 -34.57730 -34.32809 -32.56506 -31.38546 -29.39809 -28.60855 -28.00211 -26.54537 -25.59663 -23.77712 -23.13759 -22.36346 -21.58116 -20.32238 -19.90803 -19.55831 -19.04477 -18.14023 -17.64260 -17.11117 -16.76761 -16.45768 -16.23155 -15.84927 -15.67230 -15.31728 -15.25450 -15.13995 -14.88135 -14.64109 -14.44413 -14.23668 -13.79292 -13.75052 -13.48242 -13.36788 -13.21323 -13.01811 -12.82434 -12.79354 -12.69371 -12.66000 -12.16055 -12.11166 -12.00867 -11.99254 -11.81135 -11.75681 -11.45141 -11.42251 -11.27979 -11.19706 -10.92567 -10.80766 -10.45971 -9.89179 -9.51079 -8.96519 -7.88139 -5.16324 1.52216 1.53727 1.62027 1.62538 1.86248 2.20543 2.46889 2.60951 3.36843 3.43910 3.65608 3.69775 3.84160 3.91343 3.92416 3.98317 4.08431 4.17208 4.24827 4.34980 4.44519 4.47642 4.53049 4.62875 4.70715 4.80780 4.84913 4.86400 4.89497 4.94857 5.02393 5.03345 5.05933 5.09082 5.12308 5.23407 5.29923 5.33898 5.36387 5.39076 5.42069 5.51817 5.54074 5.57335 5.63340 5.95359 6.11996 6.32822 6.65113 7.18614 7.25531 7.40636 7.84711 8.14652 8.38085 9.35446 Molecular weight = 340.23amu Principal moments of inertia in cm(-1) A = 0.009951 B = 0.003485 C = 0.003178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2813.001036 B = 8033.066346 C = 8807.733805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.124 4.124 3 C -0.104 4.104 4 C -0.122 4.122 5 C 0.162 3.838 6 H 0.129 0.871 7 N -0.722 5.722 8 C 0.703 3.297 9 N -0.854 5.854 10 O -0.615 6.615 11 C 0.505 3.495 12 O -0.563 6.563 13 N -0.606 5.606 14 C 0.081 3.919 15 C 0.171 3.829 16 H 0.080 0.920 17 N -0.723 5.723 18 C -0.230 4.230 19 H 0.085 0.915 20 C -0.072 4.072 21 N -0.970 5.970 22 Si 0.966 3.034 23 H -0.260 1.260 24 H -0.300 1.300 25 H -0.301 1.301 26 C -0.077 4.077 27 C -0.122 4.122 28 C -0.119 4.119 29 C 0.124 3.876 30 H 0.057 0.943 31 H 0.053 0.947 32 H 0.060 0.940 33 H 0.064 0.936 34 H 0.049 0.951 35 H 0.062 0.938 36 H 0.077 0.923 37 H 0.077 0.923 38 H 0.063 0.937 39 H 0.416 0.584 40 H 0.411 0.589 41 H 0.417 0.583 42 H 0.087 0.913 43 H 0.062 0.938 44 H 0.374 0.626 45 H 0.247 0.753 46 H 0.073 0.927 47 H 0.063 0.937 48 H 0.054 0.946 49 H 0.038 0.962 50 H 0.066 0.934 51 H 0.059 0.941 52 H 0.041 0.959 53 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.447 -9.718 12.778 20.313 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.162 4.162 3 C -0.141 4.141 4 C -0.161 4.161 5 C 0.052 3.948 6 H 0.147 0.853 7 N -0.380 5.380 8 C 0.401 3.599 9 N -0.423 5.423 10 O -0.494 6.494 11 C 0.293 3.707 12 O -0.441 6.441 13 N -0.340 5.340 14 C -0.044 4.044 15 C 0.061 3.939 16 H 0.098 0.902 17 N -0.363 5.363 18 C -0.362 4.362 19 H 0.103 0.897 20 C -0.265 4.265 21 N -0.621 5.621 22 Si 0.796 3.204 23 H -0.184 1.184 24 H -0.228 1.228 25 H -0.229 1.229 26 C -0.078 4.078 27 C -0.179 4.179 28 C -0.177 4.177 29 C 0.000 4.000 30 H 0.076 0.924 31 H 0.072 0.928 32 H 0.079 0.921 33 H 0.083 0.917 34 H 0.067 0.933 35 H 0.081 0.919 36 H 0.095 0.905 37 H 0.095 0.905 38 H 0.082 0.918 39 H 0.252 0.748 40 H 0.241 0.759 41 H 0.249 0.751 42 H 0.105 0.895 43 H 0.080 0.920 44 H 0.207 0.793 45 H 0.056 0.944 46 H 0.092 0.908 47 H 0.082 0.918 48 H 0.073 0.927 49 H 0.057 0.943 50 H 0.084 0.916 51 H 0.078 0.922 52 H 0.059 0.941 53 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -11.698 -10.463 13.090 20.437 hybrid contribution -0.063 1.785 -0.300 1.811 sum -11.762 -8.678 12.790 19.422 Atomic orbital electron populations 1.21742 0.94870 1.01929 1.02052 1.21499 0.96582 0.96421 1.01683 1.21493 0.92471 0.97495 1.02662 1.21875 0.97598 0.93307 1.03308 1.20717 0.89305 0.97257 0.87503 0.85313 1.44570 1.56275 1.33755 1.03378 1.16127 0.79213 0.82882 0.81675 1.42757 1.58322 1.34581 1.06672 1.90924 1.42410 1.29380 1.86691 1.21279 0.92074 0.76153 0.81242 1.90697 1.65780 1.50444 1.37217 1.48471 1.07540 1.70972 1.07036 1.23120 0.96862 1.01303 0.83162 1.21447 0.92199 0.88553 0.91687 0.90196 1.42625 1.38232 1.19875 1.35549 1.19689 1.09448 1.01385 1.05697 0.89697 1.25456 1.00307 0.98065 1.02636 1.69831 1.34411 1.13177 1.44692 0.85179 0.78261 0.77729 0.79219 1.18448 1.22792 1.22887 1.21992 0.96143 0.96417 0.93258 1.21622 1.02086 0.91937 1.02282 1.21503 0.95516 1.00764 0.99936 1.22173 0.81891 0.98734 0.97163 0.92440 0.92759 0.92131 0.91736 0.93265 0.91934 0.90472 0.90462 0.91788 0.74767 0.75885 0.75078 0.89459 0.91954 0.79270 0.94385 0.90800 0.91825 0.92718 0.94330 0.91552 0.92177 0.94099 0.91879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.01 9.91 71.98 0.71 -1.30 16 2 C -0.12 -2.05 5.93 30.59 0.18 -1.87 16 3 C -0.10 -1.78 5.10 30.59 0.16 -1.63 16 4 C -0.12 -2.84 4.53 30.59 0.14 -2.70 16 5 C 0.16 4.13 2.43 44.25 0.11 4.23 16 6 H 0.13 2.74 7.52 -2.39 -0.02 2.72 16 7 N -0.72 -16.05 4.66 -461.41 -2.15 -18.20 16 8 C 0.70 19.03 7.59 179.06 1.36 20.39 16 9 N -0.85 -14.45 8.88 -184.75 -1.64 -16.09 16 10 O -0.62 -23.23 13.03 18.45 0.24 -22.99 16 11 C 0.50 17.72 6.84 87.66 0.60 18.32 16 12 O -0.56 -24.57 13.93 19.43 0.27 -24.30 16 13 N -0.61 -20.43 3.31 -811.35 -2.69 -23.11 16 14 C 0.08 2.50 5.60 86.73 0.49 2.98 16 15 C 0.17 5.93 2.85 46.18 0.13 6.06 16 16 H 0.08 2.64 8.02 -2.38 -0.02 2.62 16 17 N -0.72 -32.82 4.62 -317.33 -1.47 -34.28 16 18 C -0.23 -11.54 9.98 84.03 0.84 -10.70 16 19 H 0.09 3.97 7.83 -2.91 -0.02 3.95 16 20 C -0.07 -3.90 5.50 84.86 0.47 -3.43 16 21 N -0.97 -57.10 13.06 21.65 0.28 -56.82 16 22 Si 0.97 43.64 29.55 68.60 2.03 45.67 16 23 H -0.26 -10.78 7.11 99.48 0.71 -10.08 16 24 H -0.30 -13.82 7.11 99.48 0.71 -13.11 16 25 H -0.30 -13.94 7.11 99.48 0.71 -13.23 16 26 C -0.08 -2.36 0.84 -50.71 -0.04 -2.41 16 27 C -0.12 -3.02 8.58 71.98 0.62 -2.40 16 28 C -0.12 -3.82 8.22 71.98 0.59 -3.22 16 29 C 0.12 4.34 5.83 86.93 0.51 4.85 16 30 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 31 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 32 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 33 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 34 H 0.05 0.91 8.14 -2.38 -0.02 0.90 16 35 H 0.06 1.06 7.75 -2.39 -0.02 1.04 16 36 H 0.08 1.14 8.14 -2.38 -0.02 1.12 16 37 H 0.08 1.73 6.61 -2.38 -0.02 1.71 16 38 H 0.06 1.93 6.04 -2.39 -0.01 1.92 16 39 H 0.42 6.04 8.84 -92.71 -0.82 5.22 16 40 H 0.41 3.81 8.84 -92.71 -0.82 2.99 16 41 H 0.42 6.48 8.93 -92.70 -0.83 5.65 16 42 H 0.09 2.17 6.69 -2.39 -0.02 2.15 16 43 H 0.06 2.13 7.83 -2.38 -0.02 2.11 16 44 H 0.37 18.97 6.12 -92.71 -0.57 18.40 16 45 H 0.25 14.31 8.31 -92.71 -0.77 13.54 16 46 H 0.07 1.62 8.14 -2.38 -0.02 1.60 16 47 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 48 H 0.05 1.36 7.91 -2.39 -0.02 1.34 16 49 H 0.04 1.47 6.39 -2.38 -0.02 1.45 16 50 H 0.07 1.80 8.14 -2.38 -0.02 1.79 16 51 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 52 H 0.04 1.63 7.99 -2.39 -0.02 1.61 16 53 H 0.06 2.26 7.95 -2.38 -0.02 2.24 16 Total: -1.00 -76.46 413.10 -0.36 -76.82 By element: Atomic # 1 Polarization: 48.22 SS G_CDS: -2.09 Total: 46.12 kcal Atomic # 6 Polarization: 20.33 SS G_CDS: 6.85 Total: 27.18 kcal Atomic # 7 Polarization: -140.85 SS G_CDS: -7.66 Total: -148.51 kcal Atomic # 8 Polarization: -47.80 SS G_CDS: 0.51 Total: -47.29 kcal Atomic # 14 Polarization: 43.64 SS G_CDS: 2.03 Total: 45.67 kcal Total: -76.46 -0.36 -76.82 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001677043031.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.965 kcal (2) G-P(sol) polarization free energy of solvation -76.463 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.428 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.822 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds