Wall clock time and date at job start Sat Apr 11 2020 06:11:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86801 * 119.99824 * 2 1 4 4 H 1.48505 * 109.47142 * 239.99771 * 3 2 1 5 5 H 1.48498 * 109.47286 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.46932 * 120.00459 * 3 2 1 7 7 C 1.38816 * 120.00006 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99582 * 179.97438 * 7 2 1 9 9 N 1.36930 * 120.00030 * 359.97438 * 7 2 1 10 10 C 1.46500 * 120.00101 * 179.97438 * 9 7 2 11 11 H 1.09009 * 109.57284 * 34.84211 * 10 9 7 12 12 C 1.53798 * 109.52427 * 155.00011 * 10 9 7 13 13 C 1.52451 * 109.40046 * 197.73809 * 12 10 9 14 14 C 1.53944 * 110.73052 * 246.27329 * 13 12 10 15 15 C 1.52879 * 109.73657 * 44.36748 * 14 13 12 16 16 C 1.53444 * 109.38491 * 72.89634 * 15 14 13 17 17 N 1.45335 * 108.44438 * 282.26702 * 16 15 14 18 18 C 1.34780 * 120.37077 * 136.65229 * 17 16 15 19 19 O 1.21276 * 120.00412 * 180.02562 * 18 17 16 20 20 C 1.50703 * 119.99571 * 0.02562 * 18 17 16 21 21 C 1.52997 * 109.46917 * 179.97438 * 20 18 17 22 22 C 1.52998 * 109.47031 * 179.97438 * 21 20 18 23 23 C 1.53002 * 109.47344 * 180.02562 * 22 21 20 24 24 N 1.46501 * 109.47073 * 179.97438 * 23 22 21 25 25 C 1.34779 * 119.99611 * 179.97438 * 24 23 22 26 26 N 1.34774 * 119.99828 * 179.97438 * 25 24 23 27 27 O 1.21587 * 119.99844 * 0.02562 * 25 24 23 28 28 C 1.46992 * 119.25203 * 316.71894 * 17 16 15 29 29 H 0.97002 * 120.00672 * 0.02562 * 1 2 3 30 30 H 0.96997 * 120.00121 * 359.97438 * 9 7 2 31 31 H 1.09001 * 109.48487 * 77.75964 * 12 10 9 32 32 H 1.09003 * 109.48195 * 317.71386 * 12 10 9 33 33 H 1.09001 * 109.22502 * 125.94790 * 13 12 10 34 34 H 1.09003 * 109.18391 * 6.57102 * 13 12 10 35 35 H 1.09000 * 109.42964 * 284.28275 * 14 13 12 36 36 H 1.09003 * 109.42635 * 164.44389 * 14 13 12 37 37 H 1.08996 * 109.48381 * 312.92474 * 15 14 13 38 38 H 1.09000 * 109.50451 * 192.87966 * 15 14 13 39 39 H 1.09002 * 109.67650 * 42.01699 * 16 15 14 40 40 H 1.08995 * 109.67603 * 162.51995 * 16 15 14 41 41 H 1.09004 * 109.47051 * 299.99801 * 20 18 17 42 42 H 1.09003 * 109.46860 * 59.99468 * 20 18 17 43 43 H 1.08996 * 109.47129 * 299.99939 * 21 20 18 44 44 H 1.09002 * 109.46713 * 60.00052 * 21 20 18 45 45 H 1.09004 * 109.47126 * 300.00362 * 22 21 20 46 46 H 1.09003 * 109.47197 * 59.99958 * 22 21 20 47 47 H 1.08996 * 109.46880 * 300.00140 * 23 22 21 48 48 H 1.09002 * 109.46648 * 60.00062 * 23 22 21 49 49 H 0.96993 * 120.00292 * 0.02562 * 24 23 22 50 50 H 0.96998 * 120.00133 * 0.02562 * 26 25 24 51 51 H 0.97000 * 120.00219 * 180.02562 * 26 25 24 52 52 H 1.08998 * 109.53043 * 351.68805 * 28 17 16 53 53 H 1.08994 * 109.56637 * 231.51744 * 28 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2851 2.7465 0.0006 6 1 3.1039 1.6964 1.2124 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2021 -0.0010 9 7 1.3256 -2.3880 -0.0005 10 6 2.0581 -3.6568 -0.0017 11 1 2.9711 -3.5518 0.5845 12 6 1.1778 -4.7590 0.6111 13 6 2.0531 -5.9400 1.0152 14 6 1.7315 -7.1760 0.1557 15 6 1.6050 -6.7657 -1.3116 16 6 2.9976 -6.4518 -1.8745 17 7 3.3943 -5.1327 -1.4109 18 6 4.6473 -4.9156 -0.9644 19 8 4.9710 -3.8123 -0.5787 20 6 5.6461 -6.0439 -0.9445 21 6 6.9808 -5.5339 -0.3976 22 6 7.9947 -6.6795 -0.3768 23 6 9.3293 -6.1697 0.1707 24 7 10.2999 -7.2669 0.1912 25 6 11.5530 -7.0497 0.6373 26 7 12.4457 -8.0592 0.6567 27 8 11.8777 -5.9434 1.0233 28 6 2.4130 -4.0384 -1.4332 29 1 -0.4851 0.8400 -0.0004 30 1 0.3556 -2.3881 0.0002 31 1 0.4416 -5.0866 -0.1230 32 1 0.6657 -4.3684 1.4905 33 1 1.8752 -6.1762 2.0644 34 1 3.1010 -5.6718 0.8804 35 1 0.7926 -7.6166 0.4912 36 1 2.5323 -7.9082 0.2596 37 1 0.9738 -5.8805 -1.3885 38 1 1.1584 -7.5813 -1.8803 39 1 3.7123 -7.1951 -1.5214 40 1 2.9642 -6.4632 -2.9638 41 1 5.2748 -6.8466 -0.3073 42 1 5.7888 -6.4207 -1.9574 43 1 7.3519 -4.7314 -1.0352 44 1 6.8382 -5.1569 0.6151 45 1 7.6234 -7.4817 0.2610 46 1 8.1373 -7.0570 -1.3894 47 1 9.7007 -5.3673 -0.4668 48 1 9.1863 -5.7926 1.1833 49 1 10.0409 -8.1493 -0.1170 50 1 12.1865 -8.9419 0.3492 51 1 13.3475 -7.9031 0.9782 52 1 1.5146 -4.3652 -1.9566 53 1 2.8397 -3.1759 -1.9451 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001689265614.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:58 Heat of formation + Delta-G solvation = -97.083610 kcal Electronic energy + Delta-G solvation = -30671.739390 eV Core-core repulsion = 26576.860022 eV Total energy + Delta-G solvation = -4094.879369 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.226 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.48494 -40.81157 -38.86634 -37.00105 -36.64219 -35.04167 -34.97215 -34.17242 -33.78378 -31.26829 -30.51262 -28.57466 -27.35120 -25.90776 -24.96604 -23.67303 -22.53080 -22.25412 -21.79724 -20.87473 -19.59100 -19.16021 -19.09084 -18.22221 -17.88375 -17.36348 -17.05283 -16.87894 -16.38466 -16.02849 -15.74402 -15.68830 -15.43695 -15.27065 -15.14934 -15.08473 -14.29583 -14.24907 -14.13133 -13.76330 -13.50180 -13.42906 -13.06807 -12.98862 -12.77935 -12.63477 -12.58062 -12.42448 -12.27075 -12.04317 -12.01097 -11.92468 -11.72202 -11.52732 -11.51014 -11.40589 -11.36454 -11.23674 -11.00821 -10.74462 -10.52772 -9.96392 -9.54342 -8.91590 -7.98055 -5.25398 1.39892 1.42851 1.49935 1.82676 1.95063 2.17110 2.21159 2.53587 3.34243 3.60208 3.71211 3.81364 3.85867 3.99212 4.04186 4.05979 4.17036 4.23369 4.31988 4.34047 4.40049 4.46314 4.55000 4.61349 4.66704 4.73758 4.79624 4.83431 4.89177 4.90334 4.94761 4.99429 5.05712 5.10788 5.21479 5.31327 5.34510 5.36117 5.42737 5.47101 5.49862 5.51923 5.52423 5.62504 5.80313 5.92859 6.04690 6.26234 6.68289 7.14769 7.31633 7.42193 7.67204 8.06282 8.31791 9.24463 Molecular weight = 340.23amu Principal moments of inertia in cm(-1) A = 0.010019 B = 0.002544 C = 0.002123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2794.077563 B =11003.027409 C =13188.310601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.964 5.964 2 C -0.071 4.071 3 Si 0.965 3.035 4 H -0.284 1.284 5 H -0.285 1.285 6 H -0.285 1.285 7 C -0.232 4.232 8 H 0.055 0.945 9 N -0.731 5.731 10 C 0.165 3.835 11 H 0.026 0.974 12 C -0.120 4.120 13 C -0.112 4.112 14 C -0.105 4.105 15 C -0.151 4.151 16 C 0.101 3.899 17 N -0.601 5.601 18 C 0.491 3.509 19 O -0.593 6.593 20 C -0.123 4.123 21 C -0.103 4.103 22 C -0.108 4.108 23 C 0.134 3.866 24 N -0.728 5.728 25 C 0.693 3.307 26 N -0.846 5.846 27 O -0.655 6.655 28 C 0.116 3.884 29 H 0.252 0.748 30 H 0.375 0.625 31 H 0.080 0.920 32 H 0.039 0.961 33 H 0.056 0.944 34 H 0.047 0.953 35 H 0.069 0.931 36 H 0.087 0.913 37 H 0.062 0.938 38 H 0.101 0.899 39 H 0.116 0.884 40 H 0.077 0.923 41 H 0.125 0.875 42 H 0.124 0.876 43 H 0.048 0.952 44 H 0.046 0.954 45 H 0.096 0.904 46 H 0.096 0.904 47 H 0.046 0.954 48 H 0.045 0.955 49 H 0.417 0.583 50 H 0.416 0.584 51 H 0.419 0.581 52 H 0.089 0.911 53 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.323 -31.796 -4.976 35.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.615 5.615 2 C -0.263 4.263 3 Si 0.794 3.206 4 H -0.210 1.210 5 H -0.211 1.211 6 H -0.211 1.211 7 C -0.364 4.364 8 H 0.073 0.927 9 N -0.372 5.372 10 C 0.056 3.944 11 H 0.045 0.955 12 C -0.158 4.158 13 C -0.150 4.150 14 C -0.142 4.142 15 C -0.188 4.188 16 C -0.021 4.021 17 N -0.334 5.334 18 C 0.282 3.718 19 O -0.473 6.473 20 C -0.162 4.162 21 C -0.142 4.142 22 C -0.146 4.146 23 C 0.009 3.991 24 N -0.386 5.386 25 C 0.390 3.610 26 N -0.416 5.416 27 O -0.538 6.538 28 C -0.009 4.009 29 H 0.061 0.939 30 H 0.207 0.793 31 H 0.098 0.902 32 H 0.058 0.942 33 H 0.075 0.925 34 H 0.066 0.934 35 H 0.088 0.912 36 H 0.106 0.894 37 H 0.080 0.920 38 H 0.119 0.881 39 H 0.134 0.866 40 H 0.095 0.905 41 H 0.143 0.857 42 H 0.143 0.857 43 H 0.067 0.933 44 H 0.065 0.935 45 H 0.114 0.886 46 H 0.115 0.885 47 H 0.064 0.936 48 H 0.063 0.937 49 H 0.254 0.746 50 H 0.247 0.753 51 H 0.252 0.748 52 H 0.107 0.893 53 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges 14.718 -30.158 -4.499 33.857 hybrid contribution 0.046 1.417 0.080 1.420 sum 14.764 -28.741 -4.418 32.612 Atomic orbital electron populations 1.69772 1.06038 1.26029 1.59662 1.25420 0.96431 1.00511 1.03953 0.85346 0.77383 0.80000 0.77868 1.21008 1.21087 1.21118 1.19379 0.90608 0.85627 1.40802 0.92685 1.42506 1.05323 1.00809 1.88526 1.20822 0.93975 0.85259 0.94361 0.95543 1.21989 0.98477 0.95249 1.00076 1.21618 0.98883 0.94899 0.99642 1.21709 1.02730 0.95909 0.93882 1.22327 0.96872 1.02817 0.96810 1.21973 0.97791 0.82759 0.99556 1.48000 1.10532 1.11523 1.63307 1.21679 0.83259 0.90582 0.76320 1.90763 1.79285 1.28333 1.48933 1.21731 0.92618 0.96032 1.05865 1.21181 0.93905 0.98033 1.01037 1.21645 0.91322 0.98033 1.03560 1.21154 0.88472 0.88951 1.00488 1.44872 1.09680 1.14831 1.69172 1.16340 0.81938 0.84375 0.78324 1.42768 1.14943 1.12216 1.71644 1.90964 1.80053 1.25767 1.57008 1.21948 0.91734 0.88434 0.98818 0.93902 0.79263 0.90211 0.94221 0.92522 0.93388 0.91241 0.89443 0.91984 0.88079 0.86597 0.90522 0.85745 0.85749 0.93349 0.93482 0.88569 0.88531 0.93582 0.93653 0.74582 0.75284 0.74843 0.89278 0.95786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -61.26 13.06 21.65 0.28 -60.98 16 2 C -0.07 -4.36 5.50 84.86 0.47 -3.90 16 3 Si 0.96 50.38 29.55 68.60 2.03 52.41 16 4 H -0.28 -14.56 7.11 99.48 0.71 -13.85 16 5 H -0.29 -14.46 7.11 99.48 0.71 -13.76 16 6 H -0.28 -14.67 7.11 99.48 0.71 -13.97 16 7 C -0.23 -14.26 9.91 84.04 0.83 -13.42 16 8 H 0.06 3.53 7.83 -2.91 -0.02 3.51 16 9 N -0.73 -39.72 5.12 -322.69 -1.65 -41.38 16 10 C 0.16 7.13 2.39 45.04 0.11 7.23 16 11 H 0.03 1.33 6.14 -2.38 -0.01 1.32 16 12 C -0.12 -4.00 4.97 30.68 0.15 -3.85 16 13 C -0.11 -2.80 5.41 30.73 0.17 -2.63 16 14 C -0.11 -1.60 5.75 30.87 0.18 -1.42 16 15 C -0.15 -2.26 5.45 30.70 0.17 -2.09 16 16 C 0.10 1.49 5.88 86.75 0.51 2.00 16 17 N -0.60 -16.11 1.69 -823.87 -1.39 -17.50 16 18 C 0.49 14.56 6.16 87.66 0.54 15.10 16 19 O -0.59 -25.72 14.73 -3.02 -0.04 -25.76 16 20 C -0.12 -1.93 4.09 29.85 0.12 -1.81 16 21 C -0.10 -1.93 4.50 30.59 0.14 -1.79 16 22 C -0.11 -1.06 5.33 30.59 0.16 -0.90 16 23 C 0.13 2.25 5.67 86.38 0.49 2.74 16 24 N -0.73 -8.87 5.56 -478.53 -2.66 -11.53 16 25 C 0.69 12.75 8.84 179.05 1.58 14.33 16 26 N -0.85 -6.62 8.88 -184.75 -1.64 -8.26 16 27 O -0.66 -20.42 17.18 -3.99 -0.07 -20.49 16 28 C 0.12 4.34 4.76 86.07 0.41 4.75 16 29 H 0.25 15.49 8.31 -92.71 -0.77 14.72 16 30 H 0.38 21.14 7.80 -92.71 -0.72 20.42 16 31 H 0.08 2.38 5.47 -2.39 -0.01 2.37 16 32 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 33 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 34 H 0.05 1.34 5.38 -2.39 -0.01 1.33 16 35 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 36 H 0.09 0.88 7.87 -2.39 -0.02 0.86 16 37 H 0.06 1.31 3.35 -2.39 -0.01 1.31 16 38 H 0.10 0.95 8.14 -2.39 -0.02 0.93 16 39 H 0.12 0.88 5.76 -2.39 -0.01 0.87 16 40 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 41 H 0.12 1.15 7.51 -2.39 -0.02 1.14 16 42 H 0.12 1.14 8.09 -2.39 -0.02 1.12 16 43 H 0.05 1.16 8.10 -2.39 -0.02 1.14 16 44 H 0.05 1.14 8.10 -2.39 -0.02 1.13 16 45 H 0.10 0.52 8.14 -2.39 -0.02 0.50 16 46 H 0.10 0.51 8.14 -2.39 -0.02 0.49 16 47 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 48 H 0.04 0.98 8.14 -2.39 -0.02 0.96 16 49 H 0.42 1.42 8.49 -92.71 -0.79 0.63 16 50 H 0.42 -0.10 8.84 -92.71 -0.82 -0.92 16 51 H 0.42 2.91 8.93 -92.71 -0.83 2.08 16 52 H 0.09 2.95 6.07 -2.39 -0.01 2.94 16 53 H 0.02 1.12 8.07 -2.39 -0.02 1.10 16 Total: -1.00 -93.87 405.09 -1.32 -95.18 By element: Atomic # 1 Polarization: 26.17 SS G_CDS: -2.20 Total: 23.98 kcal Atomic # 6 Polarization: 8.30 SS G_CDS: 6.03 Total: 14.33 kcal Atomic # 7 Polarization: -132.59 SS G_CDS: -7.06 Total: -139.65 kcal Atomic # 8 Polarization: -46.13 SS G_CDS: -0.11 Total: -46.25 kcal Atomic # 14 Polarization: 50.38 SS G_CDS: 2.03 Total: 52.41 kcal Total: -93.87 -1.32 -95.18 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001689265614.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.901 kcal (2) G-P(sol) polarization free energy of solvation -93.865 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.767 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -95.182 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.084 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds