Wall clock time and date at job start Sat Apr 11 2020 06:12:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53117 * 109.52337 * 2 1 4 4 C 1.53034 * 109.28056 * 182.37489 * 3 2 1 5 5 N 1.46847 * 109.52375 * 59.17710 * 4 3 2 6 6 C 1.46898 * 111.00249 * 174.15709 * 5 4 3 7 7 C 1.50697 * 109.47554 * 293.61062 * 6 5 4 8 8 O 1.21278 * 119.99621 * 353.72652 * 7 6 5 9 9 N 1.34770 * 120.00239 * 173.73158 * 7 6 5 10 10 C 1.46495 * 119.99986 * 359.97438 * 9 7 6 11 11 C 1.46503 * 120.00109 * 179.97438 * 9 7 6 12 12 C 1.53001 * 109.46803 * 89.99894 * 11 9 7 13 13 N 1.46900 * 109.46779 * 180.02562 * 12 11 9 14 14 C 1.46900 * 110.99970 * 180.02562 * 13 12 11 15 15 C 1.50703 * 109.47361 * 179.97438 * 14 13 12 16 16 O 1.21300 * 119.99767 * 359.97438 * 15 14 13 17 17 N 1.34777 * 120.00374 * 179.97438 * 15 14 13 18 18 C 1.37095 * 120.00141 * 179.97438 * 17 15 14 19 19 H 1.08001 * 119.99756 * 0.02562 * 18 17 15 20 20 C 1.38947 * 120.00171 * 179.97438 * 18 17 15 21 21 N 1.31417 * 119.99554 * 0.02562 * 20 18 17 22 22 Si 1.86794 * 120.00404 * 180.02562 * 20 18 17 23 23 H 1.48499 * 109.47161 * 89.99961 * 22 20 18 24 24 H 1.48503 * 109.47379 * 210.00540 * 22 20 18 25 25 H 1.48502 * 109.46779 * 330.00031 * 22 20 18 26 26 C 1.46851 * 111.19960 * 298.26104 * 5 4 3 27 27 C 1.53039 * 109.52277 * 61.73577 * 26 5 4 28 28 H 1.08999 * 109.47400 * 60.00334 * 1 2 3 29 29 H 1.09010 * 109.46970 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47682 * 300.00186 * 1 2 3 31 31 H 1.09008 * 109.51965 * 120.11994 * 2 1 3 32 32 H 1.09002 * 109.50799 * 62.42857 * 3 2 1 33 33 H 1.09009 * 109.53007 * 302.33770 * 3 2 1 34 34 H 1.08997 * 109.46479 * 299.16387 * 4 3 2 35 35 H 1.09006 * 109.45070 * 179.18405 * 4 3 2 36 36 H 1.09000 * 109.47153 * 173.60422 * 6 5 4 37 37 H 1.09002 * 109.46736 * 53.60690 * 6 5 4 38 38 H 1.09006 * 109.47716 * 269.99978 * 10 9 7 39 39 H 1.09001 * 109.47341 * 29.99940 * 10 9 7 40 40 H 1.08998 * 109.47596 * 150.00116 * 10 9 7 41 41 H 1.09002 * 109.46872 * 209.99568 * 11 9 7 42 42 H 1.09000 * 109.47008 * 329.99755 * 11 9 7 43 43 H 1.09002 * 109.47140 * 299.99510 * 12 11 9 44 44 H 1.09000 * 109.47451 * 60.00133 * 12 11 9 45 45 H 1.00899 * 111.00715 * 56.04008 * 13 12 11 46 46 H 1.08996 * 109.46774 * 299.99628 * 14 13 12 47 47 H 1.09002 * 109.47657 * 59.99648 * 14 13 12 48 48 H 0.96993 * 119.99675 * 359.97438 * 17 15 14 49 49 H 0.97002 * 119.99723 * 180.02562 * 21 20 18 50 50 H 1.08993 * 109.46180 * 181.75718 * 26 5 4 51 51 H 1.08998 * 109.45684 * 301.72487 * 26 5 4 52 52 H 1.09002 * 109.49850 * 180.88263 * 27 26 5 53 53 H 1.09004 * 109.49776 * 60.76859 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0416 1.4431 0.0000 4 6 3.5708 1.4371 -0.0599 5 7 4.0116 0.7425 -1.2763 6 6 5.4685 0.8374 -1.4381 7 6 5.8532 2.2718 -1.6939 8 8 4.9925 3.1118 -1.8503 9 7 7.1537 2.6212 -1.7488 10 6 8.1934 1.6066 -1.5594 11 6 7.5277 4.0156 -1.9980 12 6 7.6490 4.7570 -0.6651 13 7 8.0235 6.1553 -0.9150 14 6 8.1500 6.8996 0.3451 15 6 8.5348 8.3264 0.0494 16 8 8.6890 8.6875 -1.0983 17 7 8.7077 9.2011 1.0601 18 6 9.0583 10.4989 0.7910 19 1 9.1955 10.8204 -0.2309 20 6 9.2360 11.4008 1.8329 21 7 9.0685 11.0097 3.0763 22 14 9.7129 13.1693 1.4664 23 1 8.4857 13.9880 1.2970 24 1 10.5166 13.7089 2.5925 25 1 10.5159 13.2168 0.2180 26 6 3.5721 -0.6587 -1.2765 27 6 2.0430 -0.7152 -1.2528 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0278 0.0005 30 1 -0.3634 0.5138 0.8899 31 1 1.8942 -0.5156 0.8887 32 1 1.7151 1.9451 0.9108 33 1 1.6455 1.9703 -0.8680 34 1 3.9665 0.9225 0.8157 35 1 3.9376 2.4635 -0.0746 36 1 5.7813 0.2214 -2.2813 37 1 5.9585 0.4862 -0.5300 38 1 8.4450 1.5373 -0.5010 39 1 7.8274 0.6415 -1.9097 40 1 9.0814 1.8860 -2.1264 41 1 8.4841 4.0475 -2.5199 42 1 6.7631 4.4929 -2.6110 43 1 6.6926 4.7251 -0.1432 44 1 8.4136 4.2797 -0.0521 45 1 7.3633 6.6014 -1.5341 46 1 7.1975 6.8822 0.8746 47 1 8.9186 6.4374 0.9647 48 1 8.5841 8.9124 1.9778 49 1 9.1921 11.6394 3.8036 50 1 3.9401 -1.1546 -2.1747 51 1 3.9678 -1.1635 -0.3952 52 1 1.7175 -1.7553 -1.2372 53 1 1.6469 -0.2226 -2.1410 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001691525951.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:12:26 Heat of formation + Delta-G solvation = -95.262626 kcal Electronic energy + Delta-G solvation = -29500.485612 eV Core-core repulsion = 25405.685207 eV Total energy + Delta-G solvation = -4094.800405 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.226 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.24603 -40.19835 -39.65777 -37.48218 -36.23448 -35.72749 -35.47870 -33.30274 -31.77359 -31.51863 -29.92427 -28.12469 -27.49986 -26.56114 -25.27985 -24.15292 -23.33640 -22.59783 -21.18116 -20.58926 -20.16249 -19.88092 -18.16910 -17.93025 -17.43350 -17.10985 -16.72686 -16.51355 -16.42445 -15.91529 -15.68749 -15.51949 -15.38968 -15.23501 -15.01090 -14.77748 -14.54453 -14.23943 -13.94546 -13.85616 -13.73210 -13.53716 -13.42360 -13.28817 -13.10257 -13.02061 -12.90316 -12.76837 -12.66995 -12.44560 -12.43334 -12.13368 -12.12395 -12.07769 -11.61166 -11.52950 -11.28030 -11.17324 -10.71228 -10.41703 -10.04316 -9.70719 -9.46324 -9.25527 -8.48552 -5.97762 1.37177 1.40992 1.54150 1.61738 1.87326 2.01335 2.28576 2.86009 3.01331 3.18121 3.47303 3.61835 3.84320 3.86636 3.90105 3.99656 4.10901 4.20749 4.26348 4.29256 4.31223 4.36985 4.43754 4.47313 4.48823 4.51522 4.54406 4.60464 4.70731 4.73801 4.79258 4.79877 4.84842 4.92824 4.95254 4.97658 5.01930 5.13855 5.22850 5.26640 5.33459 5.39043 5.46458 5.54088 5.81190 5.97440 6.03593 6.14492 6.24948 6.43572 6.57127 7.09845 7.22274 7.52514 8.07663 8.68886 Molecular weight = 340.23amu Principal moments of inertia in cm(-1) A = 0.016426 B = 0.001729 C = 0.001610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1704.223682 B =16189.296270 C =17387.135151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.091 4.091 3 C -0.108 4.108 4 C 0.059 3.941 5 N -0.543 5.543 6 C 0.045 3.955 7 C 0.503 3.497 8 O -0.567 6.567 9 N -0.615 5.615 10 C 0.070 3.930 11 C 0.124 3.876 12 C 0.057 3.943 13 N -0.675 5.675 14 C 0.067 3.933 15 C 0.437 3.563 16 O -0.622 6.622 17 N -0.572 5.572 18 C -0.336 4.336 19 H 0.080 0.920 20 C -0.013 4.013 21 N -0.920 5.920 22 Si 0.995 3.005 23 H -0.271 1.271 24 H -0.269 1.269 25 H -0.272 1.272 26 C 0.057 3.943 27 C -0.109 4.109 28 H 0.048 0.952 29 H 0.066 0.934 30 H 0.053 0.947 31 H 0.072 0.928 32 H 0.065 0.935 33 H 0.051 0.949 34 H 0.037 0.963 35 H 0.055 0.945 36 H 0.130 0.870 37 H 0.083 0.917 38 H 0.067 0.933 39 H 0.095 0.905 40 H 0.086 0.914 41 H 0.101 0.899 42 H 0.059 0.941 43 H 0.016 0.984 44 H 0.087 0.913 45 H 0.343 0.657 46 H 0.059 0.941 47 H 0.109 0.891 48 H 0.397 0.603 49 H 0.278 0.722 50 H 0.090 0.910 51 H 0.045 0.955 52 H 0.086 0.914 53 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.493 -32.005 -3.705 33.588 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.110 4.110 3 C -0.146 4.146 4 C -0.069 4.069 5 N -0.268 5.268 6 C -0.086 4.086 7 C 0.292 3.708 8 O -0.446 6.446 9 N -0.349 5.349 10 C -0.072 4.072 11 C 0.001 3.999 12 C -0.073 4.073 13 N -0.308 5.308 14 C -0.066 4.066 15 C 0.225 3.775 16 O -0.509 6.509 17 N -0.209 5.209 18 C -0.466 4.466 19 H 0.098 0.902 20 C -0.213 4.213 21 N -0.561 5.561 22 Si 0.819 3.181 23 H -0.197 1.197 24 H -0.194 1.194 25 H -0.197 1.197 26 C -0.069 4.069 27 C -0.147 4.147 28 H 0.067 0.933 29 H 0.085 0.915 30 H 0.073 0.927 31 H 0.091 0.909 32 H 0.084 0.916 33 H 0.070 0.930 34 H 0.055 0.945 35 H 0.073 0.927 36 H 0.148 0.852 37 H 0.101 0.899 38 H 0.086 0.914 39 H 0.114 0.886 40 H 0.105 0.895 41 H 0.119 0.881 42 H 0.078 0.922 43 H 0.034 0.966 44 H 0.105 0.895 45 H 0.161 0.839 46 H 0.077 0.923 47 H 0.127 0.873 48 H 0.230 0.770 49 H 0.088 0.912 50 H 0.108 0.892 51 H 0.063 0.937 52 H 0.105 0.895 53 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -9.360 -31.156 -4.803 32.884 hybrid contribution -0.385 1.037 1.367 1.758 sum -9.744 -30.119 -3.436 31.842 Atomic orbital electron populations 1.21787 0.94524 1.02221 1.01606 1.21182 0.96173 0.95000 0.98649 1.21587 0.94090 0.97522 1.01422 1.22050 0.96563 0.98512 0.89794 1.61514 1.10851 1.15493 1.38987 1.22038 0.89528 0.92587 1.04409 1.21255 0.81863 0.91824 0.75874 1.90701 1.50094 1.53678 1.50082 1.47952 1.06461 1.09051 1.71435 1.22138 0.90901 0.91253 1.02871 1.21228 1.01759 0.81068 0.95887 1.22245 0.98743 0.88079 0.98209 1.60045 1.55237 1.02200 1.13284 1.21520 1.01770 0.90527 0.92767 1.20797 0.83015 0.88476 0.85241 1.90491 1.57645 1.80342 1.22381 1.41919 1.61132 1.09398 1.08435 1.19695 1.45693 0.86630 0.94542 0.90245 1.26079 0.96736 1.04197 0.94300 1.69678 1.49427 1.37827 0.99147 0.84894 0.78472 0.76719 0.78038 1.19680 1.19364 1.19707 1.22187 0.96294 0.86597 1.01866 1.21643 0.94328 1.01057 0.97685 0.93261 0.91532 0.92748 0.90932 0.91610 0.93017 0.94522 0.92665 0.85224 0.89888 0.91444 0.88601 0.89539 0.88068 0.92238 0.96580 0.89477 0.83926 0.92316 0.87331 0.76962 0.91234 0.89180 0.93695 0.89535 0.92385 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.68 9.20 71.98 0.66 -1.01 16 2 C -0.09 -1.19 2.79 -10.72 -0.03 -1.22 16 3 C -0.11 -1.97 5.38 30.64 0.16 -1.81 16 4 C 0.06 1.16 5.12 86.32 0.44 1.60 16 5 N -0.54 -9.50 4.35 -900.94 -3.92 -13.41 16 6 C 0.04 0.62 3.91 85.56 0.33 0.95 16 7 C 0.50 11.05 7.20 87.66 0.63 11.69 16 8 O -0.57 -18.34 14.29 -3.02 -0.04 -18.39 16 9 N -0.61 -11.06 2.87 -846.77 -2.43 -13.49 16 10 C 0.07 0.59 10.17 127.77 1.30 1.88 16 11 C 0.12 2.85 5.71 86.38 0.49 3.35 16 12 C 0.06 1.49 6.01 86.30 0.52 2.01 16 13 N -0.68 -22.84 6.12 -517.93 -3.17 -26.01 16 14 C 0.07 2.43 6.17 85.56 0.53 2.96 16 15 C 0.44 21.65 7.82 87.66 0.69 22.33 16 16 O -0.62 -35.64 15.78 -3.09 -0.05 -35.69 16 17 N -0.57 -30.24 5.29 -306.98 -1.62 -31.86 16 18 C -0.34 -19.54 9.68 84.04 0.81 -18.72 16 19 H 0.08 4.91 7.16 -2.91 -0.02 4.89 16 20 C -0.01 -0.73 5.50 84.92 0.47 -0.26 16 21 N -0.92 -50.36 13.05 21.66 0.28 -50.08 16 22 Si 1.00 43.59 29.55 68.60 2.03 45.62 16 23 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 24 H -0.27 -11.08 7.11 99.48 0.71 -10.37 16 25 H -0.27 -11.97 7.11 99.48 0.71 -11.27 16 26 C 0.06 0.65 5.46 86.33 0.47 1.12 16 27 C -0.11 -1.27 5.38 30.64 0.16 -1.11 16 28 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 29 H 0.07 0.60 8.14 -2.38 -0.02 0.58 16 30 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 31 H 0.07 0.86 8.14 -2.38 -0.02 0.84 16 32 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 33 H 0.05 1.15 8.14 -2.38 -0.02 1.13 16 34 H 0.04 0.63 8.14 -2.39 -0.02 0.61 16 35 H 0.05 1.46 6.06 -2.38 -0.01 1.45 16 36 H 0.13 1.09 7.55 -2.39 -0.02 1.07 16 37 H 0.08 0.79 7.90 -2.39 -0.02 0.77 16 38 H 0.07 0.47 8.14 -2.38 -0.02 0.45 16 39 H 0.10 0.32 6.61 -2.39 -0.02 0.30 16 40 H 0.09 0.60 7.89 -2.39 -0.02 0.59 16 41 H 0.10 2.05 7.89 -2.39 -0.02 2.03 16 42 H 0.06 1.68 7.42 -2.39 -0.02 1.66 16 43 H 0.02 0.46 8.14 -2.39 -0.02 0.45 16 44 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 45 H 0.34 12.60 8.43 -89.69 -0.76 11.85 16 46 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 47 H 0.11 3.48 8.14 -2.39 -0.02 3.46 16 48 H 0.40 19.87 7.90 -92.71 -0.73 19.14 16 49 H 0.28 14.21 8.31 -92.71 -0.77 13.44 16 50 H 0.09 0.75 8.01 -2.39 -0.02 0.73 16 51 H 0.04 0.41 8.14 -2.39 -0.02 0.39 16 52 H 0.09 0.67 8.14 -2.39 -0.02 0.65 16 53 H 0.06 0.86 8.14 -2.38 -0.02 0.84 16 Total: -1.00 -76.58 421.39 -1.87 -78.45 By element: Atomic # 1 Polarization: 41.69 SS G_CDS: -0.59 Total: 41.10 kcal Atomic # 6 Polarization: 16.12 SS G_CDS: 7.65 Total: 23.77 kcal Atomic # 7 Polarization: -124.00 SS G_CDS: -10.86 Total: -134.86 kcal Atomic # 8 Polarization: -53.99 SS G_CDS: -0.09 Total: -54.08 kcal Atomic # 14 Polarization: 43.59 SS G_CDS: 2.03 Total: 45.62 kcal Total: -76.58 -1.87 -78.45 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691525951.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.815 kcal (2) G-P(sol) polarization free energy of solvation -76.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.870 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.448 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds