Wall clock time and date at job start Sat Apr 11 2020 06:12:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.47073 * 2 1 4 4 H 1.08997 * 109.46881 * 305.44651 * 3 2 1 5 5 C 1.52995 * 109.46904 * 185.44813 * 3 2 1 6 6 N 1.46498 * 109.46903 * 184.99983 * 5 3 2 7 7 C 1.34780 * 119.99641 * 180.02562 * 6 5 3 8 8 O 1.21283 * 120.00357 * 359.97438 * 7 6 5 9 9 C 1.50703 * 119.99911 * 180.02562 * 7 6 5 10 10 N 1.46894 * 109.47281 * 173.84619 * 9 7 6 11 11 C 1.47904 * 110.99954 * 184.02356 * 10 9 7 12 12 C 1.53995 * 107.05838 * 145.84681 * 11 10 9 13 13 C 1.54596 * 105.14081 * 358.77005 * 12 11 10 14 14 H 1.09001 * 110.72270 * 96.57806 * 13 12 11 15 15 C 1.52994 * 110.72636 * 219.68989 * 13 12 11 16 16 C 1.48542 * 110.99978 * 301.41607 * 10 9 7 17 17 N 1.46900 * 109.47233 * 65.44824 * 3 2 1 18 18 C 1.46896 * 110.99988 * 65.79515 * 17 3 2 19 19 C 1.50696 * 109.47032 * 184.99781 * 18 17 3 20 20 O 1.21298 * 120.00285 * 0.02562 * 19 18 17 21 21 N 1.34781 * 120.00202 * 180.02562 * 19 18 17 22 22 C 1.37096 * 120.00267 * 179.97438 * 21 19 18 23 23 H 1.08002 * 119.99700 * 0.02562 * 22 21 19 24 24 C 1.38950 * 120.00307 * 179.97438 * 22 21 19 25 25 N 1.31409 * 120.00097 * 179.97438 * 24 22 21 26 26 Si 1.86799 * 119.99441 * 0.02562 * 24 22 21 27 27 H 1.48497 * 109.47352 * 90.00057 * 26 24 22 28 28 H 1.48509 * 109.46880 * 209.99711 * 26 24 22 29 29 H 1.48498 * 109.47450 * 329.99452 * 26 24 22 30 30 H 1.09002 * 109.47329 * 64.13460 * 1 2 3 31 31 H 1.08997 * 109.47302 * 184.13709 * 1 2 3 32 32 H 1.09002 * 109.47174 * 304.13537 * 1 2 3 33 33 H 1.08996 * 109.46882 * 239.99882 * 2 1 3 34 34 H 1.09001 * 109.46929 * 120.00299 * 2 1 3 35 35 H 1.09000 * 109.47315 * 64.99841 * 5 3 2 36 36 H 1.08998 * 109.47245 * 305.00110 * 5 3 2 37 37 H 0.96993 * 120.00701 * 359.97438 * 6 5 3 38 38 H 1.09000 * 109.47323 * 53.84338 * 9 7 6 39 39 H 1.09003 * 109.46779 * 293.84664 * 9 7 6 40 40 H 1.08995 * 109.92100 * 26.48703 * 11 10 9 41 41 H 1.09006 * 110.07743 * 265.28455 * 11 10 9 42 42 H 1.09007 * 110.30679 * 239.85931 * 12 11 10 43 43 H 1.08997 * 110.39695 * 117.73502 * 12 11 10 44 44 H 1.09001 * 109.47550 * 58.54463 * 15 13 12 45 45 H 1.09009 * 109.46993 * 298.54517 * 15 13 12 46 46 H 1.09001 * 109.47240 * 178.54806 * 15 13 12 47 47 H 1.09001 * 110.66310 * 81.84817 * 16 10 9 48 48 H 1.08993 * 110.66744 * 318.71283 * 16 10 9 49 49 H 1.00899 * 110.99584 * 189.75657 * 17 3 2 50 50 H 1.08993 * 109.47289 * 305.00176 * 18 17 3 51 51 H 1.09009 * 109.46641 * 65.00125 * 18 17 3 52 52 H 0.97002 * 119.99748 * 359.97438 * 21 19 18 53 53 H 0.97004 * 119.99518 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5992 1.9837 -0.8372 5 6 3.5638 1.4446 -0.1370 6 7 4.0629 2.8168 -0.0173 7 6 5.3849 3.0632 -0.1073 8 8 6.1614 2.1490 -0.2869 9 6 5.8985 4.4746 0.0164 10 7 7.3673 4.4617 0.0319 11 6 7.9070 5.8216 0.2488 12 6 9.1963 5.6691 1.0771 13 6 9.3311 4.1514 1.3386 14 1 9.9996 3.6924 0.6103 15 6 9.8233 3.8891 2.7632 16 6 7.8805 3.6383 1.1567 17 7 1.6607 2.0960 1.2598 18 6 2.3473 1.4771 2.4014 19 6 1.8429 2.0891 3.6828 20 8 0.9945 2.9553 3.6485 21 7 2.3344 1.6740 4.8672 22 6 1.8760 2.2311 6.0329 23 1 1.1205 3.0024 6.0022 24 6 2.3823 1.8028 7.2539 25 7 1.9432 2.3372 8.3712 26 14 3.6884 0.4684 7.3068 27 1 5.0352 1.0912 7.2484 28 1 3.5550 -0.3050 8.5676 29 1 3.5133 -0.4421 6.1468 30 1 -0.3634 0.4483 -0.9247 31 1 -0.3634 -1.0249 0.0741 32 1 -0.3634 0.5767 0.8506 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5139 0.8900 35 1 3.8417 1.0405 -1.1104 36 1 4.0002 0.8294 0.6498 37 1 3.4420 3.5480 0.1260 38 1 5.5292 4.9159 0.9421 39 1 5.5492 5.0639 -0.8316 40 1 7.1833 6.4255 0.7961 41 1 8.1340 6.2912 -0.7083 42 1 9.1064 6.2089 2.0198 43 1 10.0551 6.0337 0.5136 44 1 9.1259 4.3298 3.4756 45 1 10.8087 4.3362 2.8953 46 1 9.8863 2.8143 2.9338 47 1 7.8768 2.5808 0.8921 48 1 7.2948 3.8122 2.0593 49 1 1.8434 3.0876 1.2220 50 1 2.1484 0.4055 2.4076 51 1 3.4206 1.6471 2.3155 52 1 3.0127 0.9811 4.8947 53 1 2.2970 2.0384 9.2235 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001698612488.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:12:44 Heat of formation + Delta-G solvation = -91.791048 kcal Electronic energy + Delta-G solvation = -30812.836457 eV Core-core repulsion = 26718.186591 eV Total energy + Delta-G solvation = -4094.649866 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.226 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.29319 -40.45708 -39.59066 -38.51132 -36.02078 -35.02122 -34.41033 -33.77640 -33.11960 -30.95243 -29.96081 -28.64298 -27.76425 -26.16870 -25.74392 -24.03539 -22.19528 -21.75847 -21.33241 -21.11919 -20.85564 -20.12306 -18.45810 -18.14129 -17.33030 -17.20745 -16.93414 -16.72423 -16.51861 -15.98493 -15.89689 -15.51773 -15.22397 -15.02131 -14.87264 -14.68762 -14.44335 -14.30810 -14.28320 -14.02487 -13.88806 -13.71748 -13.56801 -13.20652 -13.09552 -12.94566 -12.86761 -12.65673 -12.44385 -12.32843 -12.24328 -12.01730 -11.85038 -11.78497 -11.62108 -11.55459 -11.49820 -11.46033 -10.81330 -10.45327 -10.26333 -10.16031 -9.46259 -9.37997 -8.43524 -6.03527 1.26995 1.30821 1.39710 1.57613 1.93319 2.00452 2.19094 2.69947 3.00305 3.13040 3.39095 3.57360 3.68000 3.71304 3.83519 3.99827 4.02283 4.10323 4.21875 4.25725 4.27367 4.32477 4.34320 4.40072 4.47894 4.53045 4.57370 4.67403 4.70205 4.73100 4.78506 4.81426 4.94029 4.98591 5.00275 5.04190 5.19755 5.20956 5.24551 5.35795 5.36834 5.39774 5.49861 5.59930 5.80993 5.87998 5.88663 6.00013 6.35938 6.45779 6.57396 6.86392 7.19331 7.37953 7.93884 8.73977 Molecular weight = 340.23amu Principal moments of inertia in cm(-1) A = 0.006952 B = 0.003734 C = 0.002683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4026.482070 B = 7496.535819 C =10432.339461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.113 4.113 3 C 0.088 3.912 4 H 0.110 0.890 5 C 0.087 3.913 6 N -0.723 5.723 7 C 0.512 3.488 8 O -0.561 6.561 9 C 0.026 3.974 10 N -0.515 5.515 11 C 0.033 3.967 12 C -0.124 4.124 13 C -0.094 4.094 14 H 0.079 0.921 15 C -0.142 4.142 16 C 0.038 3.962 17 N -0.663 5.663 18 C 0.060 3.940 19 C 0.452 3.548 20 O -0.607 6.607 21 N -0.594 5.594 22 C -0.326 4.326 23 H 0.059 0.941 24 C -0.010 4.010 25 N -0.932 5.932 26 Si 0.956 3.044 27 H -0.259 1.259 28 H -0.273 1.273 29 H -0.235 1.235 30 H 0.060 0.940 31 H 0.053 0.947 32 H 0.043 0.957 33 H 0.087 0.913 34 H 0.059 0.941 35 H 0.077 0.923 36 H 0.058 0.942 37 H 0.408 0.592 38 H 0.072 0.928 39 H 0.130 0.870 40 H 0.052 0.948 41 H 0.092 0.908 42 H 0.073 0.927 43 H 0.085 0.915 44 H 0.049 0.951 45 H 0.071 0.929 46 H 0.053 0.947 47 H 0.074 0.926 48 H 0.030 0.970 49 H 0.346 0.654 50 H 0.109 0.891 51 H 0.064 0.936 52 H 0.386 0.614 53 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.103 0.460 -20.912 24.682 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.151 4.151 3 C -0.022 4.022 4 H 0.128 0.872 5 C -0.038 4.038 6 N -0.377 5.377 7 C 0.299 3.701 8 O -0.439 6.439 9 C -0.105 4.105 10 N -0.239 5.239 11 C -0.094 4.094 12 C -0.162 4.162 13 C -0.113 4.113 14 H 0.098 0.902 15 C -0.199 4.199 16 C -0.090 4.090 17 N -0.295 5.295 18 C -0.072 4.072 19 C 0.239 3.761 20 O -0.491 6.491 21 N -0.235 5.235 22 C -0.455 4.455 23 H 0.077 0.923 24 C -0.209 4.209 25 N -0.573 5.573 26 Si 0.777 3.223 27 H -0.184 1.184 28 H -0.198 1.198 29 H -0.159 1.159 30 H 0.079 0.921 31 H 0.072 0.928 32 H 0.063 0.937 33 H 0.106 0.894 34 H 0.077 0.923 35 H 0.095 0.905 36 H 0.076 0.924 37 H 0.244 0.756 38 H 0.090 0.910 39 H 0.148 0.852 40 H 0.071 0.929 41 H 0.110 0.890 42 H 0.092 0.908 43 H 0.104 0.896 44 H 0.068 0.932 45 H 0.090 0.910 46 H 0.072 0.928 47 H 0.093 0.907 48 H 0.049 0.951 49 H 0.166 0.834 50 H 0.127 0.873 51 H 0.081 0.919 52 H 0.221 0.779 53 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 12.642 -0.167 -21.276 24.749 hybrid contribution 0.592 0.395 1.593 1.745 sum 13.234 0.228 -19.683 23.720 Atomic orbital electron populations 1.21615 0.95173 1.01224 1.01970 1.21543 0.96761 0.94052 1.02789 1.22010 0.90603 0.97660 0.91977 0.87171 1.22114 0.96137 0.83055 1.02518 1.45928 1.07400 1.10353 1.73989 1.20841 0.82143 0.91593 0.75570 1.90669 1.56477 1.47481 1.49248 1.22293 0.90055 0.93660 1.04536 1.64603 1.05943 1.10225 1.43143 1.22988 0.96364 0.89159 1.00920 1.22500 0.97880 0.95533 1.00330 1.22051 0.95226 0.96128 0.97935 0.90215 1.21763 1.01621 1.01747 0.94819 1.23353 0.95490 0.99061 0.91104 1.60136 1.60582 1.07797 1.00977 1.21615 0.96736 1.00688 0.88158 1.20908 0.84396 0.85206 0.85544 1.90544 1.35577 1.35412 1.87587 1.42078 1.38767 1.37244 1.05450 1.19008 1.22315 1.20246 0.83965 0.92294 1.25998 1.00492 1.00639 0.93784 1.69790 1.44629 1.44258 0.98589 0.85482 0.78457 0.78571 0.79799 1.18395 1.19781 1.15893 0.92087 0.92768 0.93744 0.89406 0.92250 0.90463 0.92356 0.75556 0.90970 0.85195 0.92917 0.88976 0.90814 0.89584 0.93172 0.90954 0.92820 0.90716 0.95137 0.83442 0.87272 0.91865 0.77887 0.91151 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.74 9.85 71.98 0.71 -2.03 16 2 C -0.11 -1.92 5.33 30.60 0.16 -1.76 16 3 C 0.09 1.52 2.70 44.91 0.12 1.64 16 4 H 0.11 1.58 8.14 -2.39 -0.02 1.56 16 5 C 0.09 1.61 4.46 86.38 0.39 1.99 16 6 N -0.72 -13.19 5.29 -463.06 -2.45 -15.64 16 7 C 0.51 11.64 7.46 87.66 0.65 12.29 16 8 O -0.56 -17.06 14.24 -3.04 -0.04 -17.10 16 9 C 0.03 0.47 5.32 85.56 0.46 0.92 16 10 N -0.51 -10.78 5.12 -887.54 -4.55 -15.32 16 11 C 0.03 0.52 6.70 86.45 0.58 1.10 16 12 C -0.12 -1.85 6.51 31.47 0.20 -1.64 16 13 C -0.09 -1.73 3.66 -9.59 -0.04 -1.77 16 14 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 15 C -0.14 -2.40 9.15 71.98 0.66 -1.74 16 16 C 0.04 0.88 5.01 86.65 0.43 1.31 16 17 N -0.66 -16.67 5.27 -495.60 -2.61 -19.28 16 18 C 0.06 1.79 5.27 85.56 0.45 2.24 16 19 C 0.45 19.88 7.83 87.66 0.69 20.56 16 20 O -0.61 -32.38 15.89 -3.08 -0.05 -32.43 16 21 N -0.59 -27.94 5.09 -306.98 -1.56 -29.51 16 22 C -0.33 -18.98 10.16 84.04 0.85 -18.13 16 23 H 0.06 4.06 7.39 -2.91 -0.02 4.04 16 24 C -0.01 -0.56 5.50 84.93 0.47 -0.10 16 25 N -0.93 -55.95 13.96 21.66 0.30 -55.64 16 26 Si 0.96 39.29 27.74 68.60 1.90 41.20 16 27 H -0.26 -10.18 7.11 99.48 0.71 -9.47 16 28 H -0.27 -11.08 7.11 99.48 0.71 -10.38 16 29 H -0.24 -8.31 6.52 99.48 0.65 -7.66 16 30 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 31 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 32 H 0.04 1.13 7.66 -2.39 -0.02 1.12 16 33 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 34 H 0.06 1.11 6.22 -2.39 -0.01 1.09 16 35 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 36 H 0.06 1.26 6.75 -2.39 -0.02 1.25 16 37 H 0.41 5.98 7.24 -92.71 -0.67 5.31 16 38 H 0.07 1.23 7.98 -2.39 -0.02 1.21 16 39 H 0.13 1.70 8.14 -2.39 -0.02 1.68 16 40 H 0.05 0.76 7.67 -2.39 -0.02 0.74 16 41 H 0.09 1.23 8.14 -2.38 -0.02 1.21 16 42 H 0.07 1.03 7.85 -2.38 -0.02 1.02 16 43 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 44 H 0.05 0.90 8.12 -2.39 -0.02 0.88 16 45 H 0.07 0.99 8.14 -2.38 -0.02 0.97 16 46 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 47 H 0.07 2.14 6.39 -2.39 -0.02 2.12 16 48 H 0.03 0.76 7.91 -2.39 -0.02 0.74 16 49 H 0.35 8.68 7.36 -89.69 -0.66 8.02 16 50 H 0.11 2.90 6.15 -2.39 -0.01 2.89 16 51 H 0.06 1.71 6.57 -2.38 -0.02 1.70 16 52 H 0.39 15.47 5.76 -92.71 -0.53 14.94 16 53 H 0.28 15.33 8.31 -92.71 -0.77 14.56 16 Total: -1.00 -78.20 413.11 -3.27 -81.46 By element: Atomic # 1 Polarization: 48.36 SS G_CDS: -1.00 Total: 47.36 kcal Atomic # 6 Polarization: 8.12 SS G_CDS: 6.79 Total: 14.91 kcal Atomic # 7 Polarization: -124.53 SS G_CDS: -10.87 Total: -135.40 kcal Atomic # 8 Polarization: -49.44 SS G_CDS: -0.09 Total: -49.53 kcal Atomic # 14 Polarization: 39.29 SS G_CDS: 1.90 Total: 41.20 kcal Total: -78.20 -3.27 -81.46 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698612488.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.327 kcal (2) G-P(sol) polarization free energy of solvation -78.198 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.525 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.464 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds