Wall clock time and date at job start Sat Apr 11 2020 06:12:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53001 * 109.47652 * 2 1 4 4 C 1.53003 * 109.47492 * 120.00637 * 2 1 3 5 5 H 1.09004 * 109.46498 * 299.99849 * 4 2 1 6 6 C 1.52998 * 109.46869 * 59.99236 * 4 2 1 7 7 N 1.46501 * 109.46989 * 175.00397 * 6 4 2 8 8 C 1.34773 * 120.00018 * 180.02562 * 7 6 4 9 9 O 1.21279 * 120.00171 * 355.21292 * 8 7 6 10 10 C 1.50704 * 120.00165 * 175.21727 * 8 7 6 11 11 N 1.46500 * 109.47061 * 35.82984 * 10 8 7 12 12 C 1.34780 * 119.99829 * 58.97358 * 11 10 8 13 13 N 1.34777 * 119.99924 * 175.09510 * 12 11 10 14 14 O 1.21587 * 120.00081 * 355.10074 * 12 11 10 15 15 C 1.52997 * 109.47471 * 155.83330 * 10 8 7 16 16 C 1.53005 * 109.47094 * 179.97438 * 15 10 8 17 17 C 1.52999 * 109.47060 * 300.00154 * 16 15 10 18 18 C 1.52997 * 109.47293 * 59.99968 * 17 16 15 19 19 C 1.52999 * 109.47195 * 299.99689 * 18 17 16 20 20 N 1.46498 * 109.47123 * 179.97438 * 4 2 1 21 21 C 1.36931 * 120.00046 * 85.00375 * 20 4 2 22 22 H 1.07999 * 119.99838 * 359.97438 * 21 20 4 23 23 C 1.38812 * 120.00143 * 179.97438 * 21 20 4 24 24 N 1.31616 * 119.99986 * 179.97438 * 23 21 20 25 25 Si 1.86800 * 119.99792 * 359.97438 * 23 21 20 26 26 H 1.48496 * 109.47153 * 90.00449 * 25 23 21 27 27 H 1.48500 * 109.46821 * 210.00296 * 25 23 21 28 28 H 1.48499 * 109.47203 * 329.99972 * 25 23 21 29 29 H 1.09004 * 109.47125 * 299.99899 * 1 2 3 30 30 H 1.09001 * 109.47343 * 59.99364 * 1 2 3 31 31 H 1.09003 * 109.47590 * 179.97438 * 1 2 3 32 32 H 1.09010 * 109.47023 * 240.00528 * 2 1 3 33 33 H 1.08993 * 109.47292 * 180.02562 * 3 2 1 34 34 H 1.09001 * 109.47265 * 300.00683 * 3 2 1 35 35 H 1.08997 * 109.46752 * 60.00289 * 3 2 1 36 36 H 1.09000 * 109.47313 * 55.00672 * 6 4 2 37 37 H 1.08999 * 109.47398 * 295.00422 * 6 4 2 38 38 H 0.96997 * 120.00353 * 359.97438 * 7 6 4 39 39 H 0.97002 * 120.00410 * 238.97583 * 11 10 8 40 40 H 0.96992 * 119.99724 * 0.02562 * 13 12 11 41 41 H 0.96998 * 119.99995 * 179.72651 * 13 12 11 42 42 H 1.08997 * 109.47333 * 300.00248 * 15 10 8 43 43 H 1.08999 * 109.46819 * 59.99806 * 15 10 8 44 44 H 1.09000 * 109.46450 * 179.97438 * 16 15 10 45 45 H 1.08994 * 109.46860 * 60.00063 * 16 15 10 46 46 H 1.09001 * 109.46974 * 299.99440 * 17 16 15 47 47 H 1.08999 * 109.46872 * 180.02562 * 17 16 15 48 48 H 1.08997 * 109.47333 * 179.97438 * 18 17 16 49 49 H 1.08999 * 109.46819 * 59.99948 * 18 17 16 50 50 H 1.08994 * 109.47073 * 300.00129 * 19 18 17 51 51 H 1.08999 * 109.46856 * 179.97438 * 19 18 17 52 52 H 0.97000 * 119.99526 * 264.99118 * 20 4 2 53 53 H 0.97002 * 120.00308 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7214 1.2492 5 1 1.6767 -0.2076 2.1392 6 6 1.5299 -2.1638 1.2491 7 7 2.1141 -2.8884 2.3804 8 6 1.8059 -4.1849 2.5818 9 8 0.9794 -4.7279 1.8797 10 6 2.4881 -4.9599 3.6795 11 7 2.7151 -4.0810 4.8294 12 6 1.6718 -3.4781 5.4331 13 7 1.8684 -2.7494 6.5497 14 8 0.5531 -3.5918 4.9705 15 6 1.6021 -6.1336 4.1018 16 6 2.2951 -6.9208 5.2159 17 6 3.6366 -7.4518 4.7066 18 6 4.5226 -6.2781 4.2843 19 6 3.8297 -5.4910 3.1702 20 7 3.5050 -0.7219 1.2488 21 6 4.1902 0.3526 1.7498 22 1 3.6506 1.2006 2.1448 23 6 5.5783 0.3520 1.7499 24 7 6.2369 1.3850 2.2310 25 14 6.5116 -1.1151 1.0672 26 1 6.7594 -0.9130 -0.3829 27 1 7.8090 -1.2502 1.7770 28 1 5.7084 -2.3484 1.2650 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0277 -0.0005 32 1 1.8933 -0.5138 -0.8901 33 1 3.1300 1.4424 -0.0005 34 1 1.6767 1.9564 -0.8899 35 1 1.6768 1.9562 0.8900 36 1 1.8182 -2.6511 0.3177 37 1 0.4436 -2.1651 1.3387 38 1 2.7232 -2.4353 2.9842 39 1 3.6163 -3.9328 5.1562 40 1 2.7609 -2.6585 6.9185 41 1 1.1182 -2.3122 6.9820 42 1 0.6463 -5.7553 4.4642 43 1 1.4333 -6.7875 3.2462 44 1 1.6637 -7.7566 5.5169 45 1 2.4643 -6.2671 6.0714 46 1 3.4674 -8.1056 3.8510 47 1 4.1301 -8.0129 5.5001 48 1 5.4784 -6.6564 3.9219 49 1 4.6918 -5.6244 5.1400 50 1 3.6605 -6.1447 2.3147 51 1 4.4607 -4.6546 2.8698 52 1 3.9896 -1.4835 0.8937 53 1 7.2069 1.3847 2.2308 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001698972783.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:12:54 Heat of formation + Delta-G solvation = -102.269896 kcal Electronic energy + Delta-G solvation = -32877.358995 eV Core-core repulsion = 28782.254732 eV Total energy + Delta-G solvation = -4095.104263 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.226 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.20685 -40.15866 -39.17854 -38.41180 -35.46115 -34.99903 -34.89032 -34.14713 -32.69364 -31.84030 -30.73537 -29.61580 -27.63559 -25.72591 -24.41851 -23.73389 -23.19727 -22.65544 -21.50787 -20.97152 -20.24371 -19.62308 -19.28628 -18.51136 -17.76708 -17.22871 -17.01122 -16.27244 -16.11535 -16.08034 -15.76455 -15.49620 -15.38711 -15.06460 -14.96884 -14.68623 -14.63080 -14.50374 -14.24305 -13.76745 -13.54668 -13.36062 -13.25221 -13.13905 -12.97245 -12.94535 -12.84287 -12.53911 -12.26540 -12.13271 -11.95909 -11.81330 -11.76066 -11.52068 -11.50864 -11.36374 -11.35785 -11.24445 -10.92824 -10.82076 -10.60757 -10.04624 -9.92738 -9.27911 -7.93322 -5.26591 1.39690 1.44842 1.50251 1.51074 1.94083 2.11683 2.32518 2.53489 3.36815 3.50980 3.54076 3.62614 3.65803 3.74829 3.82720 4.11736 4.18290 4.22594 4.23189 4.25060 4.37674 4.45185 4.48610 4.57390 4.63651 4.69002 4.75797 4.86823 4.90725 4.99037 5.01334 5.10710 5.11346 5.14793 5.19752 5.20096 5.26276 5.28642 5.34075 5.40776 5.49995 5.53279 5.58122 5.72858 5.86639 5.87158 6.05264 6.27642 6.56916 7.06090 7.12837 7.23224 7.66913 7.86042 8.07631 9.27333 Molecular weight = 340.23amu Principal moments of inertia in cm(-1) A = 0.010321 B = 0.004530 C = 0.003865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2712.143135 B = 6179.686269 C = 7243.307525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.104 4.104 3 C -0.132 4.132 4 C 0.181 3.819 5 H 0.047 0.953 6 C 0.120 3.880 7 N -0.708 5.708 8 C 0.513 3.487 9 O -0.582 6.582 10 C 0.192 3.808 11 N -0.723 5.723 12 C 0.700 3.300 13 N -0.846 5.846 14 O -0.627 6.627 15 C -0.109 4.109 16 C -0.107 4.107 17 C -0.117 4.117 18 C -0.111 4.111 19 C -0.120 4.120 20 N -0.742 5.742 21 C -0.206 4.206 22 H 0.063 0.937 23 C -0.056 4.056 24 N -0.981 5.981 25 Si 0.942 3.058 26 H -0.294 1.294 27 H -0.298 1.298 28 H -0.249 1.249 29 H 0.051 0.949 30 H 0.065 0.935 31 H 0.057 0.943 32 H 0.064 0.936 33 H 0.050 0.950 34 H 0.053 0.947 35 H 0.036 0.964 36 H 0.061 0.939 37 H 0.068 0.932 38 H 0.406 0.594 39 H 0.415 0.585 40 H 0.413 0.587 41 H 0.419 0.581 42 H 0.052 0.948 43 H 0.068 0.932 44 H 0.069 0.931 45 H 0.065 0.935 46 H 0.063 0.937 47 H 0.083 0.917 48 H 0.085 0.915 49 H 0.078 0.922 50 H 0.083 0.917 51 H 0.073 0.927 52 H 0.363 0.637 53 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.353 -15.514 7.908 17.949 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.125 4.125 3 C -0.189 4.189 4 C 0.073 3.927 5 H 0.065 0.935 6 C -0.005 4.005 7 N -0.358 5.358 8 C 0.299 3.701 9 O -0.462 6.462 10 C 0.101 3.899 11 N -0.384 5.384 12 C 0.398 3.602 13 N -0.415 5.415 14 O -0.507 6.507 15 C -0.148 4.148 16 C -0.144 4.144 17 C -0.154 4.154 18 C -0.149 4.149 19 C -0.158 4.158 20 N -0.385 5.385 21 C -0.337 4.337 22 H 0.081 0.919 23 C -0.247 4.247 24 N -0.632 5.632 25 Si 0.771 3.229 26 H -0.221 1.221 27 H -0.225 1.225 28 H -0.173 1.173 29 H 0.070 0.930 30 H 0.084 0.916 31 H 0.076 0.924 32 H 0.082 0.918 33 H 0.069 0.931 34 H 0.072 0.928 35 H 0.055 0.945 36 H 0.079 0.921 37 H 0.087 0.913 38 H 0.242 0.758 39 H 0.253 0.747 40 H 0.244 0.756 41 H 0.252 0.748 42 H 0.071 0.929 43 H 0.086 0.914 44 H 0.088 0.912 45 H 0.083 0.917 46 H 0.082 0.918 47 H 0.101 0.899 48 H 0.104 0.896 49 H 0.096 0.904 50 H 0.101 0.899 51 H 0.092 0.908 52 H 0.196 0.804 53 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -5.756 -15.885 7.017 18.295 hybrid contribution 1.406 0.444 0.126 1.479 sum -4.350 -15.442 7.143 17.561 Atomic orbital electron populations 1.21849 0.94220 1.01792 1.02063 1.21598 0.95786 0.96694 0.98466 1.21705 1.01717 0.95522 0.99979 1.20553 0.83105 0.92264 0.96815 0.93481 1.21617 0.97916 0.92055 0.88921 1.45863 1.48424 1.11085 1.30419 1.21264 0.81478 0.82306 0.85012 1.90616 1.34571 1.70321 1.50649 1.20272 0.97402 0.89194 0.82986 1.45058 1.09502 1.50515 1.33328 1.16203 0.84218 0.78723 0.81095 1.42790 1.15149 1.55630 1.27945 1.90987 1.24381 1.67840 1.67511 1.21652 0.98098 0.95083 0.99927 1.21452 0.96916 0.99157 0.96882 1.21561 0.94730 0.97491 1.01605 1.21535 0.98815 0.97144 0.97383 1.21844 0.92322 1.01151 1.00502 1.42723 1.01542 1.19438 1.74777 1.18881 0.89085 0.95634 1.30099 0.91868 1.25269 0.97138 0.99771 1.02527 1.69859 1.06870 1.32253 1.54176 0.85609 0.78354 0.81449 0.77464 1.22149 1.22542 1.17329 0.92990 0.91613 0.92419 0.91754 0.93068 0.92787 0.94485 0.92109 0.91348 0.75844 0.74709 0.75628 0.74772 0.92908 0.91384 0.91242 0.91655 0.91820 0.89855 0.89609 0.90389 0.89878 0.90806 0.80356 0.93663 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.88 8.84 71.98 0.64 -3.25 16 2 C -0.10 -3.44 2.69 -10.79 -0.03 -3.47 16 3 C -0.13 -4.80 8.26 71.98 0.59 -4.21 16 4 C 0.18 6.58 2.18 44.99 0.10 6.68 16 5 H 0.05 1.86 8.08 -2.39 -0.02 1.84 16 6 C 0.12 4.12 4.73 86.38 0.41 4.52 16 7 N -0.71 -24.00 5.15 -463.07 -2.39 -26.39 16 8 C 0.51 17.62 5.14 87.66 0.45 18.08 16 9 O -0.58 -23.90 16.09 -3.03 -0.05 -23.95 16 10 C 0.19 4.87 0.59 2.86 0.00 4.87 16 11 N -0.72 -15.26 3.31 -441.43 -1.46 -16.73 16 12 C 0.70 17.75 8.02 179.05 1.44 19.18 16 13 N -0.85 -14.06 8.88 -184.74 -1.64 -15.70 16 14 O -0.63 -22.31 14.48 -3.99 -0.06 -22.37 16 15 C -0.11 -2.77 4.06 30.59 0.12 -2.65 16 16 C -0.11 -1.85 5.77 30.60 0.18 -1.67 16 17 C -0.12 -1.55 5.92 30.59 0.18 -1.37 16 18 C -0.11 -1.50 5.75 30.59 0.18 -1.33 16 19 C -0.12 -2.43 4.77 30.60 0.15 -2.28 16 20 N -0.74 -31.09 4.24 -322.94 -1.37 -32.46 16 21 C -0.21 -10.48 8.05 84.03 0.68 -9.80 16 22 H 0.06 3.58 7.62 -2.91 -0.02 3.56 16 23 C -0.06 -3.00 5.50 84.86 0.47 -2.53 16 24 N -0.98 -58.63 13.97 21.65 0.30 -58.33 16 25 Si 0.94 42.12 27.73 68.60 1.90 44.02 16 26 H -0.29 -13.54 7.11 99.48 0.71 -12.83 16 27 H -0.30 -13.59 7.11 99.48 0.71 -12.88 16 28 H -0.25 -9.77 6.52 99.48 0.65 -9.12 16 29 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 30 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 31 H 0.06 1.53 6.55 -2.39 -0.02 1.51 16 32 H 0.06 2.12 8.14 -2.38 -0.02 2.10 16 33 H 0.05 2.25 6.01 -2.39 -0.01 2.23 16 34 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 35 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 36 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 37 H 0.07 2.40 6.71 -2.39 -0.02 2.38 16 38 H 0.41 13.68 7.39 -92.71 -0.69 12.99 16 39 H 0.41 6.27 7.31 -92.71 -0.68 5.59 16 40 H 0.41 4.23 8.85 -92.71 -0.82 3.41 16 41 H 0.42 6.48 8.93 -92.71 -0.83 5.65 16 42 H 0.05 1.71 6.41 -2.39 -0.02 1.69 16 43 H 0.07 1.86 7.87 -2.39 -0.02 1.84 16 44 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 45 H 0.06 1.09 7.60 -2.39 -0.02 1.07 16 46 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 47 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 48 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 49 H 0.08 0.86 6.84 -2.39 -0.02 0.84 16 50 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 51 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 52 H 0.36 15.07 5.66 -92.71 -0.52 14.55 16 53 H 0.25 14.70 8.31 -92.71 -0.77 13.93 16 Total: -1.00 -73.82 402.72 -1.85 -75.67 By element: Atomic # 1 Polarization: 58.09 SS G_CDS: -2.63 Total: 55.46 kcal Atomic # 6 Polarization: 15.23 SS G_CDS: 5.54 Total: 20.78 kcal Atomic # 7 Polarization: -143.06 SS G_CDS: -6.56 Total: -149.61 kcal Atomic # 8 Polarization: -46.21 SS G_CDS: -0.11 Total: -46.32 kcal Atomic # 14 Polarization: 42.12 SS G_CDS: 1.90 Total: 44.02 kcal Total: -73.82 -1.85 -75.67 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698972783.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.602 kcal (2) G-P(sol) polarization free energy of solvation -73.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.422 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.848 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.668 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds