Wall clock time and date at job start Sat Apr 11 2020 06:12:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52994 * 109.47080 * 2 1 4 4 C 1.53004 * 109.46960 * 120.00361 * 2 1 3 5 5 H 1.08994 * 109.46855 * 59.99879 * 4 2 1 6 6 C 1.52998 * 109.46707 * 299.99577 * 4 2 1 7 7 N 1.46501 * 109.46989 * 185.00208 * 6 4 2 8 8 C 1.34773 * 120.00018 * 180.02562 * 7 6 4 9 9 O 1.21279 * 120.00171 * 355.21292 * 8 7 6 10 10 C 1.50704 * 120.00165 * 175.21727 * 8 7 6 11 11 N 1.46505 * 109.46878 * 35.83961 * 10 8 7 12 12 C 1.34769 * 120.00269 * 58.99031 * 11 10 8 13 13 N 1.34774 * 120.00208 * 175.09746 * 12 11 10 14 14 O 1.21589 * 120.00085 * 355.09836 * 12 11 10 15 15 C 1.53005 * 109.47323 * 155.83476 * 10 8 7 16 16 C 1.52999 * 109.47047 * 180.02562 * 15 10 8 17 17 C 1.52999 * 109.47127 * 300.00268 * 16 15 10 18 18 C 1.53000 * 109.47362 * 60.00269 * 17 16 15 19 19 C 1.52999 * 109.47042 * 275.83861 * 10 8 7 20 20 N 1.46497 * 109.47127 * 180.02562 * 4 2 1 21 21 C 1.36938 * 119.99719 * 275.00239 * 20 4 2 22 22 H 1.08001 * 120.00328 * 359.97438 * 21 20 4 23 23 C 1.38818 * 119.99892 * 180.02562 * 21 20 4 24 24 N 1.31622 * 119.99813 * 359.97438 * 23 21 20 25 25 Si 1.86799 * 119.99868 * 179.97438 * 23 21 20 26 26 H 1.48505 * 109.47191 * 359.97438 * 25 23 21 27 27 H 1.48502 * 109.46930 * 119.99765 * 25 23 21 28 28 H 1.48496 * 109.47367 * 239.99870 * 25 23 21 29 29 H 1.08999 * 109.47268 * 300.00305 * 1 2 3 30 30 H 1.09004 * 109.47356 * 59.99879 * 1 2 3 31 31 H 1.09002 * 109.47595 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.46821 * 239.99923 * 2 1 3 33 33 H 1.08999 * 109.47129 * 179.97438 * 3 2 1 34 34 H 1.09001 * 109.47740 * 299.99856 * 3 2 1 35 35 H 1.09003 * 109.47356 * 60.00251 * 3 2 1 36 36 H 1.09000 * 109.47313 * 65.00483 * 6 4 2 37 37 H 1.08999 * 109.47398 * 305.00233 * 6 4 2 38 38 H 0.96997 * 120.00353 * 359.97438 * 7 6 4 39 39 H 0.97006 * 119.99947 * 238.99405 * 11 10 8 40 40 H 0.97004 * 120.00055 * 0.02562 * 13 12 11 41 41 H 0.97004 * 120.00179 * 179.72271 * 13 12 11 42 42 H 1.08994 * 109.47030 * 300.00601 * 15 10 8 43 43 H 1.08995 * 109.46573 * 60.00372 * 15 10 8 44 44 H 1.08999 * 109.46856 * 180.02562 * 16 15 10 45 45 H 1.09003 * 109.47092 * 60.00337 * 16 15 10 46 46 H 1.08995 * 109.47427 * 300.00264 * 17 16 15 47 47 H 1.09000 * 109.47329 * 179.97438 * 17 16 15 48 48 H 1.08997 * 109.47274 * 180.02562 * 18 17 16 49 49 H 1.08997 * 109.47576 * 59.99516 * 18 17 16 50 50 H 1.08997 * 109.47170 * 299.99250 * 19 10 8 51 51 H 1.08999 * 109.47252 * 59.99958 * 19 10 8 52 52 H 0.97003 * 120.00084 * 94.99005 * 20 4 2 53 53 H 0.97002 * 119.99443 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7214 1.2492 5 1 1.6766 -1.7489 1.2491 6 6 1.5300 -0.0001 2.4984 7 7 2.1141 -0.6177 3.6916 8 6 1.8052 -0.1445 4.9151 9 8 1.1136 0.8456 5.0256 10 6 2.3194 -0.8456 6.1461 11 7 3.6651 -1.3634 5.8869 12 6 4.6554 -0.5200 5.5346 13 7 5.9141 -0.9804 5.3925 14 8 4.4134 0.6564 5.3449 15 6 2.3694 0.1430 7.3128 16 6 2.8920 -0.5687 8.5623 17 6 1.9591 -1.7286 8.9162 18 6 1.9092 -2.7172 7.7496 19 6 1.3860 -2.0052 6.4998 20 7 3.5049 -0.7208 1.2496 21 6 4.1901 -1.6919 0.5693 22 1 3.6505 -2.4584 0.0328 23 6 5.5782 -1.6918 0.5700 24 7 6.2359 -0.7580 1.2242 25 14 6.5128 -3.0168 -0.3574 26 1 5.5482 -3.9419 -1.0049 27 1 7.3670 -2.3856 -1.3953 28 1 7.3662 -3.7767 0.5910 29 1 -0.3634 0.5139 0.8899 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 3.1299 1.4425 0.0005 34 1 1.6767 1.9564 -0.8900 35 1 1.6767 1.9563 0.8900 36 1 0.4437 -0.0769 2.5444 37 1 1.8184 1.0502 2.4548 38 1 2.7226 -1.3676 3.6010 39 1 3.8434 -2.3135 5.9688 40 1 6.1072 -1.9189 5.5434 41 1 6.6262 -0.3741 5.1350 42 1 3.0342 0.9691 7.0607 43 1 1.3682 0.5283 7.5056 44 1 2.9271 0.1355 9.3935 45 1 3.8933 -0.9536 8.3691 46 1 0.9578 -1.3437 9.1093 47 1 2.3316 -2.2359 9.8062 48 1 1.2443 -3.5433 8.0016 49 1 2.9104 -3.1022 7.5564 50 1 0.3849 -1.6199 6.6927 51 1 1.3505 -2.7095 5.6687 52 1 3.9896 -0.0325 1.7316 53 1 7.2059 -0.7581 1.2250 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001698972784.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:12:57 Heat of formation + Delta-G solvation = -102.410022 kcal Electronic energy + Delta-G solvation = -33057.376584 eV Core-core repulsion = 28962.266244 eV Total energy + Delta-G solvation = -4095.110339 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.226 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.12528 -40.07429 -39.10832 -38.31271 -35.31163 -35.04846 -34.78896 -34.02439 -32.16087 -31.76835 -30.60561 -28.89093 -27.95253 -25.86637 -24.54574 -23.73402 -23.66608 -22.63941 -21.34646 -20.35591 -19.94062 -19.28948 -19.17528 -18.40313 -17.72069 -17.33751 -16.71792 -16.27220 -16.17117 -15.99895 -15.51706 -15.43282 -15.20009 -14.99301 -14.92145 -14.82606 -14.61669 -14.43517 -14.01534 -13.66989 -13.65170 -13.29743 -13.18794 -13.07139 -12.88616 -12.79664 -12.64270 -12.51066 -12.19851 -12.08499 -12.03129 -11.87863 -11.73030 -11.49773 -11.46409 -11.28424 -11.23080 -11.16883 -10.88122 -10.76069 -10.48521 -9.94655 -9.83300 -8.91854 -7.81482 -5.11519 1.48904 1.52943 1.57825 1.59942 2.00974 2.24055 2.46362 2.60914 3.48399 3.61999 3.66719 3.73541 3.80384 3.89429 3.92800 4.16957 4.21689 4.27197 4.29382 4.34797 4.43829 4.49931 4.51670 4.53995 4.68709 4.72034 4.80777 4.84474 4.92692 5.03914 5.07681 5.15277 5.15701 5.20631 5.22777 5.23959 5.29106 5.32076 5.38990 5.47549 5.50819 5.55510 5.57055 5.63980 5.69343 5.94675 6.11405 6.34785 6.66406 7.16838 7.31970 7.42533 7.77977 8.13617 8.41028 9.39279 Molecular weight = 340.23amu Principal moments of inertia in cm(-1) A = 0.010400 B = 0.004566 C = 0.003642 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2691.633048 B = 6131.256328 C = 7685.551538 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.106 4.106 3 C -0.133 4.133 4 C 0.173 3.827 5 H 0.058 0.942 6 C 0.121 3.879 7 N -0.701 5.701 8 C 0.512 3.488 9 O -0.589 6.589 10 C 0.193 3.807 11 N -0.720 5.720 12 C 0.704 3.296 13 N -0.844 5.844 14 O -0.631 6.631 15 C -0.111 4.111 16 C -0.108 4.108 17 C -0.116 4.116 18 C -0.110 4.110 19 C -0.114 4.114 20 N -0.722 5.722 21 C -0.234 4.234 22 H 0.074 0.926 23 C -0.060 4.060 24 N -0.952 5.952 25 Si 0.962 3.038 26 H -0.272 1.272 27 H -0.307 1.307 28 H -0.292 1.292 29 H 0.055 0.945 30 H 0.062 0.938 31 H 0.063 0.937 32 H 0.056 0.944 33 H 0.029 0.971 34 H 0.059 0.941 35 H 0.045 0.955 36 H 0.079 0.921 37 H 0.038 0.962 38 H 0.405 0.595 39 H 0.414 0.586 40 H 0.409 0.591 41 H 0.413 0.587 42 H 0.042 0.958 43 H 0.069 0.931 44 H 0.065 0.935 45 H 0.061 0.939 46 H 0.065 0.935 47 H 0.082 0.918 48 H 0.093 0.907 49 H 0.075 0.925 50 H 0.085 0.915 51 H 0.085 0.915 52 H 0.370 0.630 53 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.912 -8.491 13.792 18.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.128 4.128 3 C -0.190 4.190 4 C 0.064 3.936 5 H 0.076 0.924 6 C -0.004 4.004 7 N -0.351 5.351 8 C 0.298 3.702 9 O -0.469 6.469 10 C 0.102 3.898 11 N -0.381 5.381 12 C 0.402 3.598 13 N -0.410 5.410 14 O -0.511 6.511 15 C -0.150 4.150 16 C -0.145 4.145 17 C -0.154 4.154 18 C -0.147 4.147 19 C -0.152 4.152 20 N -0.361 5.361 21 C -0.366 4.366 22 H 0.092 0.908 23 C -0.254 4.254 24 N -0.602 5.602 25 Si 0.793 3.207 26 H -0.196 1.196 27 H -0.235 1.235 28 H -0.219 1.219 29 H 0.074 0.926 30 H 0.081 0.919 31 H 0.082 0.918 32 H 0.075 0.925 33 H 0.048 0.952 34 H 0.078 0.922 35 H 0.064 0.936 36 H 0.097 0.903 37 H 0.057 0.943 38 H 0.241 0.759 39 H 0.252 0.748 40 H 0.239 0.761 41 H 0.245 0.755 42 H 0.061 0.939 43 H 0.087 0.913 44 H 0.084 0.916 45 H 0.079 0.921 46 H 0.084 0.916 47 H 0.101 0.899 48 H 0.111 0.889 49 H 0.094 0.906 50 H 0.103 0.897 51 H 0.104 0.896 52 H 0.202 0.798 53 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -9.741 -7.041 13.642 18.181 hybrid contribution 2.070 -0.527 -0.989 2.354 sum -7.671 -7.567 12.652 16.619 Atomic orbital electron populations 1.21829 0.93691 1.02169 1.01994 1.21613 0.96088 0.96105 0.98972 1.21674 1.00031 0.96543 1.00750 1.20630 0.84289 0.97029 0.91626 0.92423 1.21634 0.97607 0.96509 0.84661 1.45808 1.47941 1.36136 1.05221 1.21329 0.79336 0.83712 0.85839 1.90603 1.42092 1.26792 1.87425 1.20296 0.82503 0.95909 0.91092 1.44948 1.07478 1.10594 1.75046 1.16136 0.81835 0.84670 0.77112 1.42724 1.07648 1.14826 1.75843 1.90975 1.83041 1.18003 1.59124 1.21659 1.01888 0.97274 0.94183 1.21455 0.99604 0.97999 0.95459 1.21565 0.99684 0.95552 0.98571 1.21547 1.02502 0.98042 0.92642 1.21840 0.97975 0.94707 1.00672 1.42507 1.00245 1.32510 1.60868 1.19519 0.89221 1.04433 1.23428 0.90833 1.25331 0.97270 1.00538 1.02226 1.69879 1.06172 1.36333 1.47861 0.85256 0.78616 0.79116 0.77704 1.19629 1.23508 1.21920 0.92608 0.91941 0.91832 0.92535 0.95208 0.92240 0.93599 0.90269 0.94344 0.75883 0.74779 0.76092 0.75515 0.93885 0.91254 0.91625 0.92060 0.91623 0.89938 0.88885 0.90640 0.89669 0.89636 0.79820 0.94473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.73 8.84 71.98 0.64 -3.09 16 2 C -0.11 -3.70 2.91 -10.79 -0.03 -3.73 16 3 C -0.13 -4.89 8.69 71.98 0.63 -4.27 16 4 C 0.17 6.62 2.27 44.99 0.10 6.72 16 5 H 0.06 2.13 8.08 -2.39 -0.02 2.11 16 6 C 0.12 4.52 4.52 86.38 0.39 4.91 16 7 N -0.70 -25.71 5.15 -463.07 -2.39 -28.09 16 8 C 0.51 18.92 5.14 87.66 0.45 19.37 16 9 O -0.59 -26.07 16.09 -3.03 -0.05 -26.12 16 10 C 0.19 5.23 0.60 2.86 0.00 5.23 16 11 N -0.72 -17.94 3.30 -441.43 -1.46 -19.40 16 12 C 0.70 23.59 8.02 179.06 1.44 25.02 16 13 N -0.84 -23.13 8.88 -184.75 -1.64 -24.77 16 14 O -0.63 -28.48 14.48 -4.00 -0.06 -28.54 16 15 C -0.11 -3.17 4.06 30.60 0.12 -3.05 16 16 C -0.11 -2.13 5.77 30.59 0.18 -1.95 16 17 C -0.12 -1.57 5.92 30.59 0.18 -1.39 16 18 C -0.11 -1.32 5.75 30.61 0.18 -1.14 16 19 C -0.11 -2.07 4.77 30.61 0.15 -1.93 16 20 N -0.72 -34.17 3.79 -322.94 -1.23 -35.40 16 21 C -0.23 -11.98 9.93 84.03 0.83 -11.15 16 22 H 0.07 3.64 7.83 -2.91 -0.02 3.62 16 23 C -0.06 -3.21 5.50 84.86 0.47 -2.74 16 24 N -0.95 -54.57 13.06 21.65 0.28 -54.28 16 25 Si 0.96 43.56 29.55 68.60 2.03 45.59 16 26 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 27 H -0.31 -14.49 7.11 99.48 0.71 -13.79 16 28 H -0.29 -13.01 7.11 99.48 0.71 -12.30 16 29 H 0.05 1.47 6.54 -2.39 -0.02 1.45 16 30 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 31 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 32 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 33 H 0.03 1.30 7.60 -2.39 -0.02 1.28 16 34 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 35 H 0.05 1.68 6.32 -2.39 -0.02 1.66 16 36 H 0.08 2.67 6.71 -2.39 -0.02 2.66 16 37 H 0.04 1.67 6.17 -2.39 -0.01 1.65 16 38 H 0.41 14.84 7.39 -92.71 -0.69 14.15 16 39 H 0.41 7.27 7.30 -92.70 -0.68 6.59 16 40 H 0.41 8.07 8.85 -92.70 -0.82 7.25 16 41 H 0.41 12.27 8.93 -92.71 -0.83 11.44 16 42 H 0.04 1.61 6.41 -2.39 -0.02 1.59 16 43 H 0.07 2.05 7.87 -2.39 -0.02 2.03 16 44 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 45 H 0.06 1.23 7.60 -2.39 -0.02 1.21 16 46 H 0.07 0.89 8.14 -2.39 -0.02 0.88 16 47 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 48 H 0.09 0.77 8.14 -2.39 -0.02 0.75 16 49 H 0.07 0.77 6.84 -2.39 -0.02 0.75 16 50 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 51 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 52 H 0.37 20.21 7.80 -92.71 -0.72 19.49 16 53 H 0.25 13.85 8.31 -92.71 -0.77 13.08 16 Total: -1.00 -74.05 406.30 -1.56 -75.61 By element: Atomic # 1 Polarization: 71.37 SS G_CDS: -2.77 Total: 68.60 kcal Atomic # 6 Polarization: 21.09 SS G_CDS: 5.72 Total: 26.81 kcal Atomic # 7 Polarization: -155.51 SS G_CDS: -6.43 Total: -161.94 kcal Atomic # 8 Polarization: -54.56 SS G_CDS: -0.11 Total: -54.66 kcal Atomic # 14 Polarization: 43.56 SS G_CDS: 2.03 Total: 45.59 kcal Total: -74.05 -1.56 -75.61 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698972784.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.799 kcal (2) G-P(sol) polarization free energy of solvation -74.053 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.851 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.611 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.410 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds