Wall clock time and date at job start Sat Apr 11 2020 06:13:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52991 * 109.50371 * 2 1 4 4 N 1.46508 * 109.47139 * 300.06336 * 3 2 1 5 5 C 1.34774 * 119.99839 * 179.97438 * 4 3 2 6 6 O 1.21279 * 120.00334 * 0.02562 * 5 4 3 7 7 C 1.50706 * 119.99555 * 180.02562 * 5 4 3 8 8 C 1.53004 * 109.47031 * 180.02562 * 7 5 4 9 9 C 1.53001 * 109.47159 * 180.02562 * 8 7 5 10 10 C 1.52993 * 109.46952 * 179.97438 * 9 8 7 11 11 N 1.46508 * 109.47109 * 179.97438 * 10 9 8 12 12 C 1.34764 * 120.00137 * 180.02562 * 11 10 9 13 13 N 1.34780 * 120.00419 * 180.02562 * 12 11 10 14 14 O 1.21591 * 120.00319 * 359.97438 * 12 11 10 15 15 C 1.53043 * 109.49468 * 120.06830 * 2 1 3 16 16 C 1.53041 * 109.54137 * 58.58143 * 15 2 1 17 17 C 1.53185 * 109.31089 * 61.36840 * 16 15 2 18 18 N 1.46925 * 108.77597 * 305.36519 * 17 16 15 19 19 C 1.36941 * 120.62934 * 233.63029 * 18 17 16 20 20 H 1.08000 * 119.99878 * 27.67419 * 19 18 17 21 21 C 1.38813 * 119.99917 * 207.66564 * 19 18 17 22 22 N 1.31618 * 120.00289 * 17.36370 * 21 19 18 23 23 Si 1.86801 * 119.99843 * 197.36334 * 21 19 18 24 24 H 1.48498 * 109.47328 * 90.00546 * 23 21 19 25 25 H 1.48504 * 109.47177 * 210.00177 * 23 21 19 26 26 H 1.48492 * 109.47422 * 330.00295 * 23 21 19 27 27 C 1.46926 * 118.74174 * 53.61073 * 18 17 16 28 28 H 1.08997 * 109.46800 * 299.94033 * 1 2 3 29 29 H 1.09000 * 109.46176 * 59.93495 * 1 2 3 30 30 H 1.08994 * 109.47364 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47093 * 60.05719 * 3 2 1 32 32 H 1.09000 * 109.47435 * 180.02562 * 3 2 1 33 33 H 0.97001 * 119.99507 * 0.02562 * 4 3 2 34 34 H 1.09004 * 109.47085 * 299.99672 * 7 5 4 35 35 H 1.09000 * 109.47343 * 59.99905 * 7 5 4 36 36 H 1.09004 * 109.46614 * 299.99588 * 8 7 5 37 37 H 1.08993 * 109.47083 * 59.99729 * 8 7 5 38 38 H 1.09004 * 109.46534 * 299.99934 * 9 8 7 39 39 H 1.09000 * 109.47279 * 59.99494 * 9 8 7 40 40 H 1.08992 * 109.47458 * 299.99578 * 10 9 8 41 41 H 1.09000 * 109.47136 * 59.99903 * 10 9 8 42 42 H 0.97003 * 119.99431 * 359.97438 * 11 10 9 43 43 H 0.97003 * 119.99149 * 359.97438 * 13 12 11 44 44 H 0.96996 * 120.00311 * 180.02562 * 13 12 11 45 45 H 1.08997 * 109.45830 * 178.60484 * 15 2 1 46 46 H 1.09007 * 109.45597 * 298.55869 * 15 2 1 47 47 H 1.08998 * 109.49452 * 181.31753 * 16 15 2 48 48 H 1.08997 * 109.49355 * 301.41722 * 16 15 2 49 49 H 1.08998 * 109.58758 * 185.57596 * 17 16 15 50 50 H 1.08997 * 109.70782 * 65.21925 * 17 16 15 51 51 H 0.96998 * 120.00592 * 179.97438 * 22 21 19 52 52 H 1.09000 * 109.58897 * 186.60795 * 27 18 17 53 53 H 1.08997 * 109.70439 * 66.24891 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0408 1.4421 0.0000 4 7 1.5516 2.1335 -1.1955 5 6 1.8773 3.4238 -1.4083 6 8 2.5757 4.0126 -0.6105 7 6 1.3736 4.1351 -2.6378 8 6 1.8845 5.5773 -2.6379 9 6 1.3725 6.2997 -3.8857 10 6 1.8829 7.7420 -3.8854 11 7 1.3932 8.4335 -5.0806 12 6 1.7193 9.7236 -5.2938 13 7 1.2684 10.3600 -6.3930 14 8 2.4195 10.3139 -4.4940 15 6 2.0408 -0.7228 1.2485 16 6 1.5029 -2.1555 1.2666 17 6 2.0139 -2.9041 0.0317 18 7 1.6515 -2.1386 -1.1689 19 6 0.9631 -2.7319 -2.1932 20 1 0.3070 -3.5657 -1.9913 21 6 1.1084 -2.2616 -3.4912 22 7 2.1332 -1.4969 -3.8032 23 14 -0.1505 -2.7140 -4.7949 24 1 -1.2324 -1.6970 -4.8124 25 1 0.5084 -2.7584 -6.1250 26 1 -0.7283 -4.0461 -4.4841 27 6 2.0414 -0.7243 -1.2494 28 1 -0.3633 0.5129 0.8905 29 1 -0.3632 0.5149 -0.8894 30 1 -0.3634 -1.0276 -0.0005 31 1 1.6786 1.9559 0.8905 32 1 3.1308 1.4416 -0.0005 33 1 0.9927 1.6627 -1.8333 34 1 1.7357 3.6217 -3.5285 35 1 0.2836 4.1354 -2.6364 36 1 1.5227 6.0910 -1.7471 37 1 2.9744 5.5767 -2.6394 38 1 1.7339 5.7861 -4.7767 39 1 0.2825 6.3003 -3.8837 40 1 1.5212 8.2552 -2.9946 41 1 2.9729 7.7417 -3.8873 42 1 0.8349 7.9624 -5.7189 43 1 0.7095 9.8891 -7.0309 44 1 1.5034 11.2884 -6.5466 45 1 3.1305 -0.7442 1.2355 46 1 1.6987 -0.1952 2.1390 47 1 1.8479 -2.6622 2.1679 48 1 0.4132 -2.1350 1.2547 49 1 1.5553 -3.8919 -0.0125 50 1 3.0976 -3.0065 0.0863 51 1 2.2350 -1.1685 -4.7102 52 1 1.6008 -0.2738 -2.1388 53 1 3.1273 -0.6446 -1.2992 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699868702.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:13:10 Heat of formation + Delta-G solvation = -102.622643 kcal Electronic energy + Delta-G solvation = -30055.589020 eV Core-core repulsion = 25960.469461 eV Total energy + Delta-G solvation = -4095.119559 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.226 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.02820 -40.80314 -39.78638 -37.08066 -36.25494 -34.96240 -34.85343 -34.10317 -32.93505 -31.61969 -30.19264 -27.95689 -27.32880 -26.91171 -24.95719 -23.84407 -22.44304 -22.21248 -21.84886 -21.13484 -19.54267 -19.16295 -18.49942 -18.25858 -17.81902 -17.16417 -16.98047 -16.63042 -16.45199 -15.82295 -15.74550 -15.63029 -15.37858 -15.23579 -15.10611 -14.90379 -14.61498 -14.39753 -14.09672 -13.76794 -13.63572 -13.32466 -13.07501 -12.98290 -12.69816 -12.68810 -12.56024 -12.44404 -12.23978 -12.12367 -12.08273 -11.82565 -11.70589 -11.55229 -11.51048 -11.39442 -11.21076 -10.95285 -10.75875 -10.74549 -10.47772 -9.97286 -9.96603 -8.59964 -7.80494 -5.25362 1.50503 1.53177 1.60634 1.73331 1.95756 2.16356 2.38519 2.55975 3.31301 3.63255 3.66251 3.81722 3.87240 3.98082 4.03073 4.06467 4.06764 4.34867 4.36933 4.40368 4.50036 4.58018 4.58381 4.74745 4.76615 4.78391 4.81942 4.85777 4.89228 5.01289 5.04536 5.06473 5.13635 5.18866 5.31919 5.32644 5.35919 5.40552 5.43275 5.49786 5.50758 5.59332 5.66256 5.75414 5.81258 5.91013 6.04110 6.45083 6.62823 7.11767 7.21445 7.31648 7.65720 7.91943 8.45064 9.24869 Molecular weight = 340.23amu Principal moments of inertia in cm(-1) A = 0.012644 B = 0.002151 C = 0.001892 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2213.870086 B =13014.266106 C =14793.956671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.091 4.091 3 C 0.142 3.858 4 N -0.718 5.718 5 C 0.504 3.496 6 O -0.591 6.591 7 C -0.134 4.134 8 C -0.096 4.096 9 C -0.115 4.115 10 C 0.137 3.863 11 N -0.732 5.732 12 C 0.694 3.306 13 N -0.848 5.848 14 O -0.653 6.653 15 C -0.096 4.096 16 C -0.123 4.123 17 C 0.136 3.864 18 N -0.604 5.604 19 C -0.256 4.256 20 H 0.062 0.938 21 C -0.044 4.044 22 N -0.931 5.931 23 Si 0.960 3.040 24 H -0.278 1.278 25 H -0.300 1.300 26 H -0.277 1.277 27 C 0.197 3.803 28 H 0.061 0.939 29 H 0.043 0.957 30 H 0.055 0.945 31 H 0.069 0.931 32 H 0.043 0.957 33 H 0.408 0.592 34 H 0.106 0.894 35 H 0.120 0.880 36 H 0.062 0.938 37 H 0.054 0.946 38 H 0.085 0.915 39 H 0.092 0.908 40 H 0.054 0.946 41 H 0.049 0.951 42 H 0.415 0.585 43 H 0.415 0.585 44 H 0.419 0.581 45 H 0.048 0.952 46 H 0.076 0.924 47 H 0.078 0.922 48 H 0.065 0.935 49 H 0.051 0.949 50 H 0.005 0.995 51 H 0.250 0.750 52 H 0.069 0.931 53 H -0.022 1.022 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.786 14.624 -2.081 16.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.093 4.093 3 C 0.018 3.982 4 N -0.370 5.370 5 C 0.293 3.707 6 O -0.472 6.472 7 C -0.173 4.173 8 C -0.134 4.134 9 C -0.153 4.153 10 C 0.013 3.987 11 N -0.389 5.389 12 C 0.392 3.608 13 N -0.417 5.417 14 O -0.535 6.535 15 C -0.134 4.134 16 C -0.162 4.162 17 C 0.010 3.990 18 N -0.326 5.326 19 C -0.386 4.386 20 H 0.080 0.920 21 C -0.240 4.240 22 N -0.577 5.577 23 Si 0.789 3.211 24 H -0.204 1.204 25 H -0.227 1.227 26 H -0.202 1.202 27 C 0.071 3.929 28 H 0.080 0.920 29 H 0.062 0.938 30 H 0.074 0.926 31 H 0.087 0.913 32 H 0.061 0.939 33 H 0.244 0.756 34 H 0.125 0.875 35 H 0.138 0.862 36 H 0.081 0.919 37 H 0.072 0.928 38 H 0.103 0.897 39 H 0.111 0.889 40 H 0.072 0.928 41 H 0.067 0.933 42 H 0.252 0.748 43 H 0.246 0.754 44 H 0.252 0.748 45 H 0.067 0.933 46 H 0.095 0.905 47 H 0.096 0.904 48 H 0.084 0.916 49 H 0.069 0.931 50 H 0.023 0.977 51 H 0.059 0.941 52 H 0.087 0.913 53 H -0.004 1.004 Dipole moment (debyes) X Y Z Total from point charges -6.684 15.376 -0.919 16.791 hybrid contribution -0.499 -0.715 -1.735 1.942 sum -7.184 14.660 -2.653 16.540 Atomic orbital electron populations 1.21626 0.93375 1.01849 1.00618 1.21344 0.97153 0.92791 0.98038 1.21210 0.97699 0.91631 0.87697 1.46166 1.53092 1.12020 1.25703 1.21390 0.79471 0.81620 0.88264 1.90652 1.40185 1.67183 1.49199 1.21706 1.04087 0.96290 0.95265 1.21138 1.00790 0.93227 0.98281 1.21680 1.02524 0.92513 0.98578 1.21144 0.98470 0.92480 0.86647 1.44944 1.56429 1.10337 1.27175 1.16299 0.79918 0.82182 0.82424 1.42787 1.57504 1.17153 1.24232 1.90949 1.45369 1.67996 1.49218 1.21380 0.99586 0.95965 0.96446 1.21916 1.01018 0.95573 0.97673 1.21092 0.95854 0.94642 0.87377 1.44231 1.65226 1.06510 1.16662 1.19439 1.17656 1.14833 0.86686 0.91983 1.25654 0.98551 1.01208 0.98556 1.70194 1.28788 1.39936 1.18769 0.85385 0.79093 0.78231 0.78412 1.20445 1.22661 1.20236 1.20558 0.93703 0.83656 0.94951 0.92049 0.93776 0.92618 0.91289 0.93883 0.75567 0.87533 0.86214 0.91928 0.92756 0.89653 0.88949 0.92783 0.93261 0.74827 0.75398 0.74786 0.93312 0.90503 0.90365 0.91607 0.93073 0.97691 0.94123 0.91257 1.00352 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.64 7.81 71.98 0.56 -3.08 16 2 C -0.09 -3.06 0.53 -52.10 -0.03 -3.09 16 3 C 0.14 4.58 4.57 86.37 0.39 4.97 16 4 N -0.72 -21.80 5.00 -463.06 -2.31 -24.11 16 5 C 0.50 14.99 7.83 87.66 0.69 15.67 16 6 O -0.59 -21.95 15.98 -3.02 -0.05 -22.00 16 7 C -0.13 -2.67 5.70 29.85 0.17 -2.50 16 8 C -0.10 -1.84 4.50 30.60 0.14 -1.71 16 9 C -0.12 -1.46 5.33 30.59 0.16 -1.29 16 10 C 0.14 2.36 5.67 86.38 0.49 2.85 16 11 N -0.73 -10.03 5.56 -478.55 -2.66 -12.69 16 12 C 0.69 13.23 8.84 179.06 1.58 14.81 16 13 N -0.85 -7.58 8.88 -184.75 -1.64 -9.22 16 14 O -0.65 -20.03 17.18 -4.00 -0.07 -20.10 16 15 C -0.10 -2.90 4.71 30.62 0.14 -2.75 16 16 C -0.12 -3.79 5.74 30.67 0.18 -3.61 16 17 C 0.14 5.39 6.52 86.36 0.56 5.95 16 18 N -0.60 -28.24 2.43 -699.11 -1.70 -29.94 16 19 C -0.26 -13.16 9.59 84.03 0.81 -12.35 16 20 H 0.06 3.17 7.89 -2.91 -0.02 3.14 16 21 C -0.04 -2.29 4.91 84.86 0.42 -1.87 16 22 N -0.93 -51.15 11.19 21.65 0.24 -50.91 16 23 Si 0.96 41.76 29.59 68.60 2.03 43.79 16 24 H -0.28 -11.57 7.11 99.48 0.71 -10.86 16 25 H -0.30 -13.33 7.11 99.48 0.71 -12.63 16 26 H -0.28 -11.82 7.11 99.48 0.71 -11.12 16 27 C 0.20 8.70 3.73 86.36 0.32 9.02 16 28 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 29 H 0.04 1.35 6.86 -2.39 -0.02 1.34 16 30 H 0.05 1.92 5.97 -2.39 -0.01 1.91 16 31 H 0.07 2.08 8.14 -2.39 -0.02 2.07 16 32 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 33 H 0.41 12.10 6.22 -92.71 -0.58 11.52 16 34 H 0.11 1.95 8.14 -2.38 -0.02 1.93 16 35 H 0.12 1.75 8.14 -2.39 -0.02 1.73 16 36 H 0.06 1.34 8.10 -2.38 -0.02 1.32 16 37 H 0.05 1.26 8.10 -2.39 -0.02 1.24 16 38 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 39 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 40 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 41 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 42 H 0.41 2.58 8.49 -92.71 -0.79 1.80 16 43 H 0.41 0.66 8.84 -92.71 -0.82 -0.16 16 44 H 0.42 3.22 8.93 -92.71 -0.83 2.39 16 45 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 46 H 0.08 1.93 8.14 -2.38 -0.02 1.91 16 47 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 48 H 0.07 2.01 6.33 -2.39 -0.02 2.00 16 49 H 0.05 1.99 7.93 -2.39 -0.02 1.98 16 50 H 0.01 0.21 8.14 -2.39 -0.02 0.19 16 51 H 0.25 13.31 8.31 -92.71 -0.77 12.54 16 52 H 0.07 3.31 4.95 -2.39 -0.01 3.30 16 53 H -0.02 -1.10 8.14 -2.39 -0.02 -1.12 16 Total: -1.00 -75.70 414.00 -1.64 -77.35 By element: Atomic # 1 Polarization: 28.88 SS G_CDS: -2.07 Total: 26.80 kcal Atomic # 6 Polarization: 14.44 SS G_CDS: 6.59 Total: 21.03 kcal Atomic # 7 Polarization: -118.80 SS G_CDS: -8.07 Total: -126.87 kcal Atomic # 8 Polarization: -41.98 SS G_CDS: -0.12 Total: -42.09 kcal Atomic # 14 Polarization: 41.76 SS G_CDS: 2.03 Total: 43.79 kcal Total: -75.70 -1.64 -77.35 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699868702.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.277 kcal (2) G-P(sol) polarization free energy of solvation -75.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.978 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.645 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.345 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds