Wall clock time and date at job start Sat Apr 11 2020 06:13:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52997 * 109.50319 * 2 1 4 4 C 1.53194 * 109.49782 * 120.06460 * 2 1 3 5 5 N 1.46929 * 108.77819 * 65.31024 * 4 2 1 6 6 C 1.36932 * 120.63571 * 233.59334 * 5 4 2 7 7 H 1.08000 * 120.00252 * 152.62552 * 6 5 4 8 8 C 1.38814 * 119.99568 * 332.62327 * 6 5 4 9 9 N 1.31620 * 119.99778 * 159.34070 * 8 6 5 10 10 Si 1.86797 * 120.00166 * 339.34862 * 8 6 5 11 11 H 1.48495 * 109.47249 * 92.88910 * 10 8 6 12 12 H 1.48505 * 109.47030 * 212.88881 * 10 8 6 13 13 H 1.48494 * 109.47189 * 332.88296 * 10 8 6 14 14 C 1.46927 * 118.73603 * 53.61254 * 5 4 2 15 15 C 1.53195 * 108.77428 * 306.39289 * 14 5 4 16 16 C 1.53039 * 109.34208 * 54.62022 * 15 14 5 17 17 H 1.08995 * 109.46130 * 58.67134 * 16 15 14 18 18 N 1.46500 * 109.46178 * 178.63469 * 16 15 14 19 19 C 1.34782 * 119.99500 * 275.00001 * 18 16 15 20 20 O 1.21284 * 119.99874 * 359.97438 * 19 18 16 21 21 C 1.50696 * 119.99876 * 180.02562 * 19 18 16 22 22 C 1.53004 * 109.47220 * 179.97438 * 21 19 18 23 23 C 1.52997 * 109.47174 * 180.02562 * 22 21 19 24 24 C 1.52997 * 109.47285 * 180.02562 * 23 22 21 25 25 N 1.46494 * 109.47455 * 179.97438 * 24 23 22 26 26 C 1.34774 * 120.00133 * 179.97438 * 25 24 23 27 27 N 1.34783 * 120.00239 * 180.02562 * 26 25 24 28 28 O 1.21588 * 120.00353 * 359.97438 * 26 25 24 29 29 H 1.08996 * 109.47291 * 299.94038 * 1 2 3 30 30 H 1.09007 * 109.46945 * 59.93447 * 1 2 3 31 31 H 1.08994 * 109.47533 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.47625 * 180.02562 * 3 2 1 33 33 H 1.09000 * 109.46759 * 300.06149 * 3 2 1 34 34 H 1.08995 * 109.47307 * 60.06195 * 3 2 1 35 35 H 1.08998 * 109.58468 * 305.52612 * 4 2 1 36 36 H 1.08996 * 109.70568 * 185.16985 * 4 2 1 37 37 H 0.97005 * 120.00050 * 179.97438 * 9 8 6 38 38 H 1.09003 * 109.58713 * 186.61001 * 14 5 4 39 39 H 1.08993 * 109.70484 * 66.24524 * 14 5 4 40 40 H 1.09007 * 109.49588 * 174.58707 * 15 14 5 41 41 H 1.09000 * 109.50004 * 294.64808 * 15 14 5 42 42 H 0.96995 * 120.00909 * 94.99604 * 18 16 15 43 43 H 1.09003 * 109.47058 * 299.99942 * 21 19 18 44 44 H 1.08999 * 109.47211 * 59.99797 * 21 19 18 45 45 H 1.09004 * 109.47047 * 299.99994 * 22 21 19 46 46 H 1.08999 * 109.46730 * 60.00071 * 22 21 19 47 47 H 1.09004 * 109.47122 * 299.99939 * 23 22 21 48 48 H 1.08999 * 109.47640 * 60.00011 * 23 22 21 49 49 H 1.09003 * 109.47084 * 300.00017 * 24 23 22 50 50 H 1.09007 * 109.47464 * 59.99318 * 24 23 22 51 51 H 0.97002 * 120.00104 * 0.02562 * 25 24 23 52 52 H 0.97001 * 119.99551 * 359.97438 * 27 26 25 53 53 H 0.96994 * 120.00099 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0407 1.4422 0.0000 4 6 2.0413 -0.7235 1.2498 5 7 1.6514 -2.1378 1.1703 6 6 0.9637 -2.7307 2.1953 7 1 0.3115 -3.5679 1.9949 8 6 1.1049 -2.2557 3.4920 9 7 0.1839 -2.5212 4.3940 10 14 2.6017 -1.2393 3.9565 11 1 2.2909 0.2034 3.7922 12 1 2.9639 -1.5097 5.3712 13 1 3.7404 -1.6040 3.0758 14 6 2.0138 -2.9041 -0.0298 15 6 1.5029 -2.1562 -1.2653 16 6 2.0401 -0.7233 -1.2485 17 1 3.1298 -0.7442 -1.2358 18 7 1.5797 -0.0154 -2.4457 19 6 2.2689 -0.1230 -3.5989 20 8 3.2705 -0.8055 -3.6454 21 6 1.7958 0.6056 -4.8303 22 6 2.7492 0.3170 -5.9916 23 6 2.2691 1.0573 -7.2415 24 6 3.2222 0.7683 -8.4030 25 7 2.7622 1.4766 -9.6000 26 6 3.4517 1.3694 -10.7531 27 7 3.0288 2.0214 -11.8543 28 8 4.4557 0.6852 -10.7998 29 1 -0.3634 0.5129 0.8905 30 1 -0.3633 0.5149 -0.8895 31 1 -0.3634 -1.0276 -0.0005 32 1 3.1307 1.4417 -0.0005 33 1 1.6768 1.9565 -0.8894 34 1 1.6786 1.9559 0.8905 35 1 1.6007 -0.2725 2.1389 36 1 3.1273 -0.6461 1.3008 37 1 0.2827 -2.1895 5.3002 38 1 1.5551 -3.8919 0.0150 39 1 3.0974 -3.0066 -0.0870 40 1 1.8480 -2.6636 -2.1662 41 1 0.4131 -2.1364 -1.2537 42 1 0.7790 0.5307 -2.4084 43 1 0.7929 0.2665 -5.0902 44 1 1.7773 1.6775 -4.6335 45 1 3.7519 0.6564 -5.7314 46 1 2.7680 -0.7549 -6.1884 47 1 1.2664 0.7183 -7.5019 48 1 2.2506 2.1292 -7.0445 49 1 4.2251 1.1069 -8.1429 50 1 3.2404 -0.3037 -8.6000 51 1 1.9618 2.0233 -9.5625 52 1 2.2280 2.5676 -11.8169 53 1 3.5248 1.9440 -12.6842 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700290082.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:13:15 Heat of formation + Delta-G solvation = -96.166324 kcal Electronic energy + Delta-G solvation = -30213.161788 eV Core-core repulsion = 26118.322196 eV Total energy + Delta-G solvation = -4094.839592 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.226 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.39717 -40.80920 -39.72819 -37.03933 -36.33003 -34.95442 -34.33564 -34.08766 -33.90413 -31.90010 -29.99712 -28.19259 -27.74089 -26.91852 -25.24891 -24.01688 -22.34914 -22.19231 -22.03099 -21.12830 -19.97477 -19.17581 -18.89951 -18.20260 -17.74250 -17.24812 -17.08894 -16.69099 -16.35890 -16.08393 -15.73748 -15.59351 -15.43972 -15.25408 -15.15483 -14.93584 -14.70377 -14.50485 -14.21660 -13.95010 -13.66713 -13.28046 -13.20569 -13.01005 -12.86591 -12.67008 -12.61896 -12.42085 -12.35942 -12.29565 -12.06441 -12.04542 -11.81724 -11.54661 -11.50978 -11.50404 -11.41472 -11.17263 -10.84505 -10.73898 -10.59197 -9.95601 -9.91133 -8.93131 -8.15776 -5.46557 1.26595 1.40313 1.48073 1.80042 1.96827 2.17403 2.33522 2.40489 3.05851 3.32228 3.62946 3.67773 3.84989 3.89543 3.92317 3.97321 4.07505 4.29292 4.32038 4.37407 4.43941 4.48703 4.56965 4.60714 4.68590 4.77182 4.82394 4.83947 4.86147 4.91589 4.92258 4.96680 5.01429 5.05847 5.07645 5.13800 5.22710 5.33162 5.36580 5.37459 5.44457 5.52658 5.63071 5.66268 5.87812 5.92616 6.05097 6.13542 6.71918 6.91252 7.14044 7.42635 7.62322 7.67152 8.03575 9.03963 Molecular weight = 340.23amu Principal moments of inertia in cm(-1) A = 0.032824 B = 0.001770 C = 0.001754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 852.838097 B =15813.298022 C =15957.587163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.082 4.082 3 C -0.135 4.135 4 C 0.134 3.866 5 N -0.612 5.612 6 C -0.240 4.240 7 H 0.055 0.945 8 C -0.027 4.027 9 N -0.953 5.953 10 Si 0.935 3.065 11 H -0.271 1.271 12 H -0.312 1.312 13 H -0.270 1.270 14 C 0.145 3.855 15 C -0.130 4.130 16 C 0.173 3.827 17 H 0.059 0.941 18 N -0.710 5.710 19 C 0.503 3.497 20 O -0.591 6.591 21 C -0.128 4.128 22 C -0.101 4.101 23 C -0.112 4.112 24 C 0.134 3.866 25 N -0.730 5.730 26 C 0.693 3.307 27 N -0.848 5.848 28 O -0.654 6.654 29 H 0.041 0.959 30 H 0.080 0.920 31 H 0.047 0.953 32 H 0.048 0.952 33 H 0.084 0.916 34 H 0.056 0.944 35 H 0.055 0.945 36 H 0.020 0.980 37 H 0.261 0.739 38 H 0.058 0.942 39 H 0.022 0.978 40 H 0.062 0.938 41 H 0.071 0.929 42 H 0.413 0.587 43 H 0.121 0.879 44 H 0.123 0.877 45 H 0.053 0.947 46 H 0.052 0.948 47 H 0.091 0.909 48 H 0.093 0.907 49 H 0.048 0.952 50 H 0.047 0.953 51 H 0.416 0.584 52 H 0.415 0.585 53 H 0.419 0.581 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.460 17.177 -29.153 33.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.084 4.084 3 C -0.193 4.193 4 C 0.009 3.991 5 N -0.336 5.336 6 C -0.370 4.370 7 H 0.073 0.927 8 C -0.222 4.222 9 N -0.599 5.599 10 Si 0.765 3.235 11 H -0.197 1.197 12 H -0.241 1.241 13 H -0.195 1.195 14 C 0.020 3.980 15 C -0.170 4.170 16 C 0.068 3.932 17 H 0.077 0.923 18 N -0.362 5.362 19 C 0.292 3.708 20 O -0.472 6.472 21 C -0.167 4.167 22 C -0.140 4.140 23 C -0.150 4.150 24 C 0.010 3.990 25 N -0.387 5.387 26 C 0.391 3.609 27 N -0.417 5.417 28 O -0.537 6.537 29 H 0.061 0.939 30 H 0.098 0.902 31 H 0.066 0.934 32 H 0.067 0.933 33 H 0.103 0.897 34 H 0.075 0.925 35 H 0.073 0.927 36 H 0.038 0.962 37 H 0.070 0.930 38 H 0.077 0.923 39 H 0.040 0.960 40 H 0.080 0.920 41 H 0.090 0.910 42 H 0.251 0.749 43 H 0.139 0.861 44 H 0.141 0.859 45 H 0.072 0.928 46 H 0.071 0.929 47 H 0.110 0.890 48 H 0.111 0.889 49 H 0.067 0.933 50 H 0.066 0.934 51 H 0.253 0.747 52 H 0.247 0.753 53 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges -1.015 16.104 -28.906 33.105 hybrid contribution 0.132 0.354 0.869 0.948 sum -0.883 16.458 -28.037 32.522 Atomic orbital electron populations 1.21702 0.93069 1.01905 1.01433 1.21198 0.97429 0.95852 0.93902 1.21804 1.00658 0.93872 1.02945 1.21432 0.96219 0.84342 0.97136 1.44416 1.65656 1.05952 1.17566 1.18822 1.17466 1.14479 0.86242 0.92734 1.25771 0.99840 1.00897 0.95735 1.69946 1.34594 1.50915 1.04456 0.86089 0.82598 0.79143 0.75676 1.19736 1.24100 1.19540 1.21009 0.96773 0.94700 0.85564 1.22249 1.01447 0.95841 0.97474 1.20523 0.97862 0.90925 0.83890 0.92288 1.46087 1.30286 1.50541 1.09307 1.21554 0.82752 0.80888 0.85624 1.90709 1.27934 1.42927 1.85584 1.21696 1.01977 1.02686 0.90386 1.21170 0.98791 1.00570 0.93451 1.21668 0.99254 1.02296 0.91755 1.21178 0.98149 0.95941 0.83773 1.44916 1.31149 1.53913 1.08772 1.16332 0.82555 0.80115 0.81934 1.42793 1.33536 1.53827 1.11533 1.90957 1.29571 1.47534 1.85649 0.93941 0.90167 0.93356 0.93318 0.89697 0.92536 0.92653 0.96228 0.93024 0.92318 0.95986 0.91972 0.91009 0.74894 0.86072 0.85851 0.92770 0.92882 0.88996 0.88877 0.93337 0.93408 0.74690 0.75339 0.74850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.58 7.83 71.98 0.56 -3.02 16 2 C -0.08 -2.49 0.56 -52.10 -0.03 -2.52 16 3 C -0.14 -3.29 8.31 71.98 0.60 -2.70 16 4 C 0.13 5.57 2.89 86.36 0.25 5.82 16 5 N -0.61 -28.38 2.21 -699.09 -1.54 -29.93 16 6 C -0.24 -13.42 10.03 84.03 0.84 -12.58 16 7 H 0.05 3.33 8.06 -2.91 -0.02 3.30 16 8 C -0.03 -1.59 5.23 84.86 0.44 -1.14 16 9 N -0.95 -59.10 13.97 21.65 0.30 -58.80 16 10 Si 0.94 46.64 24.34 68.60 1.67 48.31 16 11 H -0.27 -12.57 6.62 99.48 0.66 -11.91 16 12 H -0.31 -15.89 7.11 99.48 0.71 -15.18 16 13 H -0.27 -13.31 6.64 99.48 0.66 -12.65 16 14 C 0.15 5.81 6.52 86.36 0.56 6.37 16 15 C -0.13 -4.22 5.31 30.67 0.16 -4.06 16 16 C 0.17 5.08 1.57 45.02 0.07 5.15 16 17 H 0.06 2.04 7.57 -2.39 -0.02 2.03 16 18 N -0.71 -14.53 4.29 -442.40 -1.90 -16.43 16 19 C 0.50 10.87 7.79 87.65 0.68 11.56 16 20 O -0.59 -19.07 15.64 -3.04 -0.05 -19.11 16 21 C -0.13 -1.33 5.70 29.85 0.17 -1.16 16 22 C -0.10 -1.33 4.50 30.59 0.14 -1.19 16 23 C -0.11 -0.74 5.33 30.59 0.16 -0.57 16 24 C 0.13 1.77 5.67 86.38 0.49 2.26 16 25 N -0.73 -7.19 5.56 -478.54 -2.66 -9.85 16 26 C 0.69 11.18 8.84 179.05 1.58 12.76 16 27 N -0.85 -5.18 8.88 -184.74 -1.64 -6.82 16 28 O -0.65 -18.59 17.18 -3.99 -0.07 -18.66 16 29 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 30 H 0.08 1.57 6.58 -2.38 -0.02 1.55 16 31 H 0.05 1.68 5.97 -2.39 -0.01 1.66 16 32 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 33 H 0.08 1.50 7.37 -2.39 -0.02 1.48 16 34 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 35 H 0.06 2.53 4.50 -2.39 -0.01 2.52 16 36 H 0.02 0.84 7.07 -2.39 -0.02 0.82 16 37 H 0.26 15.44 8.31 -92.70 -0.77 14.67 16 38 H 0.06 2.38 7.93 -2.39 -0.02 2.36 16 39 H 0.02 0.89 8.14 -2.39 -0.02 0.87 16 40 H 0.06 1.98 8.14 -2.38 -0.02 1.97 16 41 H 0.07 2.28 6.34 -2.39 -0.02 2.27 16 42 H 0.41 5.74 6.67 -92.71 -0.62 5.12 16 43 H 0.12 0.66 8.14 -2.39 -0.02 0.64 16 44 H 0.12 0.59 8.14 -2.39 -0.02 0.57 16 45 H 0.05 0.94 8.10 -2.38 -0.02 0.92 16 46 H 0.05 0.94 8.10 -2.39 -0.02 0.92 16 47 H 0.09 0.28 8.14 -2.38 -0.02 0.26 16 48 H 0.09 0.26 8.14 -2.39 -0.02 0.24 16 49 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 50 H 0.05 0.83 8.14 -2.38 -0.02 0.82 16 51 H 0.42 0.69 8.49 -92.71 -0.79 -0.10 16 52 H 0.42 -0.68 8.84 -92.71 -0.82 -1.50 16 53 H 0.42 2.21 8.93 -92.71 -0.83 1.38 16 Total: -1.00 -85.16 406.89 -1.40 -86.56 By element: Atomic # 1 Polarization: 11.96 SS G_CDS: -2.20 Total: 9.76 kcal Atomic # 6 Polarization: 8.28 SS G_CDS: 6.69 Total: 14.97 kcal Atomic # 7 Polarization: -114.38 SS G_CDS: -7.44 Total: -121.82 kcal Atomic # 8 Polarization: -37.66 SS G_CDS: -0.12 Total: -37.77 kcal Atomic # 14 Polarization: 46.64 SS G_CDS: 1.67 Total: 48.31 kcal Total: -85.16 -1.40 -86.56 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700290082.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.610 kcal (2) G-P(sol) polarization free energy of solvation -85.160 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.396 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.557 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds